Wall clock time and date at job start Tue Mar 31 2020 22:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35906 * 116.99563 * 2 1 4 4 C 1.38745 * 120.05769 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94745 * 179.97438 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50693 * 120.02851 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47656 * 265.00820 * 9 8 7 11 11 C 1.53002 * 109.46934 * 300.00099 * 10 9 8 12 12 C 1.52997 * 109.47221 * 59.99875 * 10 9 8 13 13 O 1.42896 * 109.47319 * 65.00164 * 12 10 9 14 14 N 1.46896 * 109.47259 * 179.97438 * 10 9 8 15 15 C 1.46902 * 110.99949 * 179.97438 * 14 10 9 16 16 C 1.52998 * 109.47096 * 180.02562 * 15 14 10 17 17 C 1.53005 * 109.47383 * 179.97438 * 16 15 14 18 18 S 1.80996 * 109.47404 * 179.97438 * 17 16 15 19 19 C 1.76205 * 100.00061 * 179.97438 * 18 17 16 20 20 H 1.08002 * 119.99678 * 0.02562 * 19 18 17 21 21 C 1.38790 * 119.99890 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00524 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99964 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47020 * 59.99979 * 23 21 19 25 25 H 1.48504 * 109.47286 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47208 * 300.00281 * 23 21 19 27 27 H 1.09003 * 109.46765 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47374 * 299.99895 * 1 2 3 29 29 H 1.08999 * 109.47150 * 60.00201 * 1 2 3 30 30 H 1.08002 * 120.02960 * 359.97438 * 4 3 2 31 31 H 1.07997 * 119.97891 * 180.29661 * 5 4 3 32 32 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 33 33 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 34 34 H 1.09009 * 109.47165 * 25.01069 * 9 8 7 35 35 H 1.09004 * 109.47119 * 145.00207 * 9 8 7 36 36 H 1.08997 * 109.47159 * 59.99450 * 11 10 9 37 37 H 1.09004 * 109.47170 * 180.02562 * 11 10 9 38 38 H 1.09004 * 109.46636 * 299.99875 * 11 10 9 39 39 H 1.09002 * 109.47344 * 185.00437 * 12 10 9 40 40 H 1.09009 * 109.47141 * 304.99858 * 12 10 9 41 41 H 0.96700 * 114.00184 * 180.02562 * 13 12 10 42 42 H 1.00896 * 111.00312 * 303.94911 * 14 10 9 43 43 H 1.09006 * 109.46817 * 299.99321 * 15 14 10 44 44 H 1.08999 * 109.47455 * 59.99748 * 15 14 10 45 45 H 1.09005 * 109.47040 * 299.99346 * 16 15 14 46 46 H 1.09000 * 109.47825 * 60.00079 * 16 15 14 47 47 H 1.09005 * 109.46505 * 299.99681 * 17 16 15 48 48 H 1.08999 * 109.47305 * 59.99413 * 17 16 15 49 49 H 0.96998 * 120.00089 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9207 3.6048 0.0011 6 6 3.3018 3.6758 0.0005 7 6 4.0559 2.5172 -0.0011 8 6 3.4311 1.2849 -0.0011 9 6 4.2537 0.0223 -0.0034 10 6 4.4247 -0.4725 -1.4410 11 6 3.0500 -0.7583 -2.0489 12 6 5.1351 0.6005 -2.2686 13 8 6.4623 0.7843 -1.7717 14 7 5.2271 -1.7029 -1.4433 15 6 5.4119 -2.2084 -2.8101 16 6 6.2498 -3.4880 -2.7717 17 6 6.4418 -4.0149 -4.1953 18 16 7.4337 -5.5281 -4.1500 19 6 7.4954 -5.9052 -5.8701 20 1 6.9999 -5.2618 -6.5821 21 6 8.1816 -7.0285 -6.3101 22 7 8.7859 -7.8125 -5.4424 23 14 8.2476 -7.4279 -8.1337 24 1 8.8911 -6.3058 -8.8632 25 1 9.0353 -8.6698 -8.3403 26 1 6.8683 -7.6260 -8.6473 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2128 2.3203 0.0005 31 1 1.3339 4.5114 0.0063 32 1 3.7920 4.6382 0.0005 33 1 5.1343 2.5754 -0.0019 34 1 5.2331 0.2259 0.4297 35 1 3.7476 -0.7422 0.5862 36 1 2.4550 0.1549 -2.0472 37 1 3.1719 -1.1112 -3.0730 38 1 2.5440 -1.5228 -1.4593 39 1 5.1779 0.2861 -3.3114 40 1 4.5861 1.5393 -2.1944 41 1 6.9724 1.4521 -2.2501 42 1 6.1158 -1.5560 -0.9886 43 1 4.4392 -2.4248 -3.2521 44 1 5.9242 -1.4560 -3.4097 45 1 7.2226 -3.2721 -2.3297 46 1 5.7372 -4.2403 -2.1724 47 1 5.4689 -4.2308 -4.6370 48 1 6.9542 -3.2628 -4.7952 49 1 9.2658 -8.5974 -5.7500 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931603119.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:03 Heat of formation + Delta-G solvation = -97.633833 kcal Electronic energy + Delta-G solvation = -27305.413662 eV Core-core repulsion = 23550.563370 eV Total energy + Delta-G solvation = -3754.850292 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.166 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.52248 -39.71635 -38.19759 -36.73388 -35.38366 -34.59880 -32.95134 -31.05770 -30.40173 -28.47575 -27.87633 -27.61588 -26.94449 -25.84372 -22.96629 -22.84966 -22.08234 -20.10985 -19.52212 -18.76700 -18.26235 -17.35961 -17.15806 -16.89359 -16.74906 -16.62900 -16.35403 -16.21494 -15.64009 -15.38297 -15.21025 -14.91785 -14.68176 -14.40246 -13.93050 -13.67508 -13.64895 -13.57696 -13.31914 -13.04657 -12.97116 -12.89913 -12.85485 -12.70940 -12.51629 -12.41094 -12.30399 -12.05821 -11.90045 -11.80593 -11.62655 -11.51785 -11.30434 -11.13189 -10.89955 -10.31825 -9.73442 -9.29346 -9.00931 -8.66512 -8.36594 -6.13326 0.40087 0.54129 1.30949 1.40898 1.47678 1.74552 2.28766 2.47523 2.79896 2.97052 3.06228 3.32754 3.50418 3.86329 3.90074 3.95155 4.01337 4.04355 4.20639 4.29516 4.32705 4.37476 4.40645 4.43275 4.46179 4.49162 4.53728 4.59097 4.65706 4.75047 4.75455 4.77808 4.79568 4.90582 4.97043 5.03042 5.06668 5.21357 5.27986 5.34619 5.39289 5.39864 5.45965 5.58927 5.66940 5.92982 6.16280 6.18193 6.49928 6.54288 6.84144 7.04862 8.72611 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022815 B = 0.001962 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.965198 B =14267.466847 C =14735.824528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.324 6.324 3 C 0.120 3.880 4 C -0.216 4.216 5 C -0.088 4.088 6 C -0.164 4.164 7 C -0.083 4.083 8 C -0.123 4.123 9 C -0.047 4.047 10 C 0.128 3.872 11 C -0.126 4.126 12 C 0.049 3.951 13 O -0.578 6.578 14 N -0.677 5.677 15 C 0.076 3.924 16 C -0.082 4.082 17 C -0.085 4.085 18 S -0.198 6.198 19 C -0.539 4.539 20 H 0.072 0.928 21 C 0.013 3.987 22 N -0.907 5.907 23 Si 0.995 3.005 24 H -0.264 1.264 25 H -0.274 1.274 26 H -0.264 1.264 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.133 0.867 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.047 0.953 38 H 0.066 0.934 39 H 0.038 0.962 40 H 0.058 0.942 41 H 0.393 0.607 42 H 0.346 0.654 43 H 0.072 0.928 44 H 0.032 0.968 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.966 26.975 11.301 33.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.238 6.238 3 C 0.075 3.925 4 C -0.235 4.235 5 C -0.106 4.106 6 C -0.182 4.182 7 C -0.101 4.101 8 C -0.124 4.124 9 C -0.085 4.085 10 C 0.037 3.963 11 C -0.184 4.184 12 C -0.030 4.030 13 O -0.386 6.386 14 N -0.308 5.308 15 C -0.054 4.054 16 C -0.121 4.121 17 C -0.234 4.234 18 S 0.030 5.970 19 C -0.686 4.686 20 H 0.091 0.909 21 C -0.192 4.192 22 N -0.544 5.544 23 Si 0.817 3.183 24 H -0.189 1.189 25 H -0.199 1.199 26 H -0.189 1.189 27 H 0.127 0.873 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.161 0.839 31 H 0.163 0.837 32 H 0.158 0.842 33 H 0.151 0.849 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.243 0.757 42 H 0.165 0.835 43 H 0.091 0.909 44 H 0.050 0.950 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.056 25.169 12.763 32.974 hybrid contribution 0.310 1.211 -2.707 2.981 sum -16.746 26.380 10.057 32.825 Atomic orbital electron populations 1.23264 0.77318 1.05044 1.02014 1.86200 1.22561 1.26653 1.88371 1.18999 0.91928 0.84920 0.96645 1.21485 1.00926 0.92200 1.08883 1.21259 0.94918 0.97606 0.96831 1.21326 0.94244 0.98839 1.03787 1.21102 1.00490 0.91015 0.97469 1.19231 0.90778 0.95761 1.06663 1.20209 0.98991 0.94020 0.95291 1.20877 0.93387 0.87095 0.94959 1.21814 0.94655 1.02095 0.99813 1.22899 0.84070 0.99381 0.96661 1.86375 1.25843 1.64576 1.61780 1.60583 1.22739 1.30023 1.17417 1.21825 0.99152 0.94435 0.90015 1.21103 1.00108 0.97248 0.93622 1.23126 1.01158 0.98549 1.00589 1.84669 1.68906 1.30094 1.13295 1.23004 1.39697 1.14145 0.91803 0.90942 1.26104 0.93921 0.94797 1.04343 1.70157 1.32802 1.14867 1.36537 0.85050 0.78861 0.77965 0.76422 1.18882 1.19908 1.18900 0.87289 0.91817 0.91848 0.83910 0.83728 0.84162 0.84871 0.91028 0.91377 0.91890 0.93405 0.91510 0.94353 0.92375 0.75722 0.83492 0.90939 0.94994 0.92164 0.91702 0.92006 0.92175 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.32 -5.86 7.10 -92.49 -0.66 -6.51 16 3 C 0.12 2.16 5.20 22.50 0.12 2.28 16 4 C -0.22 -3.06 9.04 22.36 0.20 -2.86 16 5 C -0.09 -1.09 10.04 22.26 0.22 -0.87 16 6 C -0.16 -2.15 10.04 22.28 0.22 -1.93 16 7 C -0.08 -1.33 8.15 22.25 0.18 -1.14 16 8 C -0.12 -2.33 4.02 -19.77 -0.08 -2.41 16 9 C -0.05 -1.01 4.42 29.84 0.13 -0.88 16 10 C 0.13 2.81 0.56 3.53 0.00 2.81 16 11 C -0.13 -2.76 6.74 71.98 0.49 -2.27 16 12 C 0.05 0.97 5.06 71.98 0.36 1.33 16 13 O -0.58 -10.76 12.51 -148.98 -1.86 -12.62 16 14 N -0.68 -17.54 6.04 -470.19 -2.84 -20.38 16 15 C 0.08 2.16 4.90 86.30 0.42 2.59 16 16 C -0.08 -2.85 5.48 30.60 0.17 -2.68 16 17 C -0.08 -3.57 5.67 71.98 0.41 -3.17 16 18 S -0.20 -10.95 21.44 -56.49 -1.21 -12.16 16 19 C -0.54 -31.89 9.50 67.95 0.65 -31.25 16 20 H 0.07 4.11 7.80 -2.91 -0.02 4.09 16 21 C 0.01 0.77 5.49 84.85 0.47 1.23 16 22 N -0.91 -55.86 13.22 21.65 0.29 -55.58 16 23 Si 1.00 44.62 29.55 68.60 2.03 46.64 16 24 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 26 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 27 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 0.52 7.66 -2.38 -0.02 0.51 16 29 H 0.06 0.54 7.66 -2.39 -0.02 0.52 16 30 H 0.14 1.41 6.30 -2.91 -0.02 1.39 16 31 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 32 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.07 1.56 7.73 -2.38 -0.02 1.54 16 35 H 0.07 1.64 7.69 -2.39 -0.02 1.62 16 36 H 0.06 1.28 5.67 -2.39 -0.01 1.27 16 37 H 0.05 1.06 6.40 -2.38 -0.02 1.05 16 38 H 0.07 1.59 7.44 -2.39 -0.02 1.57 16 39 H 0.04 0.80 6.68 -2.39 -0.02 0.79 16 40 H 0.06 1.04 6.08 -2.38 -0.01 1.02 16 41 H 0.39 4.28 9.12 -74.06 -0.68 3.60 16 42 H 0.35 9.20 8.12 -89.70 -0.73 8.47 16 43 H 0.07 2.04 6.30 -2.38 -0.02 2.03 16 44 H 0.03 0.89 6.42 -2.39 -0.02 0.88 16 45 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 46 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 48 H 0.06 2.49 8.14 -2.40 -0.02 2.47 16 49 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -71.61 395.60 0.37 -71.23 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: -0.44 Total: 27.28 kcal Atomic # 6 Polarization: -42.98 SS G_CDS: 5.07 Total: -37.90 kcal Atomic # 7 Polarization: -73.41 SS G_CDS: -2.56 Total: -75.96 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -2.52 Total: -19.14 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: -10.95 SS G_CDS: -1.21 Total: -12.16 kcal Total: -71.61 0.37 -71.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931603119.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.400 kcal (2) G-P(sol) polarization free energy of solvation -71.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds