Wall clock time and date at job start Tue Mar 31 2020 22:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81395 * 103.00034 * 2 1 4 4 C 1.53003 * 109.47341 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46721 * 304.99787 * 4 3 2 6 6 C 1.52998 * 109.47065 * 184.99595 * 4 3 2 7 7 N 1.46900 * 109.47114 * 64.99733 * 4 3 2 8 8 C 1.46905 * 110.99894 * 180.02562 * 7 4 3 9 9 C 1.52995 * 109.47069 * 179.97438 * 8 7 4 10 10 H 1.09003 * 109.47429 * 304.99911 * 9 8 7 11 11 O 1.42904 * 109.47383 * 64.99654 * 9 8 7 12 12 C 1.52999 * 109.47064 * 184.99671 * 9 8 7 13 13 O 1.42906 * 109.47017 * 174.99934 * 12 9 8 14 14 C 1.35672 * 116.99791 * 180.02562 * 13 12 9 15 15 C 1.39311 * 119.81899 * 359.72420 * 14 13 12 16 16 C 1.36438 * 120.18358 * 179.76209 * 15 14 13 17 17 C 1.40830 * 119.81289 * 0.51455 * 16 15 14 18 18 C 1.41218 * 120.17970 * 179.72046 * 17 16 15 19 19 H 1.07998 * 120.00072 * 24.56905 * 18 17 16 20 20 C 1.39890 * 120.00080 * 204.56816 * 18 17 16 21 21 N 1.30886 * 119.99515 * 17.93469 * 20 18 17 22 22 Si 1.86792 * 120.00234 * 197.93138 * 20 18 17 23 23 H 1.48508 * 109.47014 * 59.99897 * 22 20 18 24 24 H 1.48495 * 109.47153 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47147 * 300.00398 * 22 20 18 26 26 C 1.40830 * 119.63994 * 359.73973 * 17 16 15 27 27 C 1.36440 * 119.81285 * 359.97438 * 26 17 16 28 28 H 1.08996 * 109.47565 * 299.99944 * 1 2 3 29 29 H 1.08997 * 109.47184 * 60.00507 * 1 2 3 30 30 H 1.09006 * 109.47166 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47536 * 59.99825 * 3 2 1 32 32 H 1.09002 * 109.46905 * 299.99927 * 3 2 1 33 33 H 1.08999 * 109.47119 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.47000 * 299.99554 * 5 4 3 35 35 H 1.09002 * 109.47463 * 60.00101 * 5 4 3 36 36 H 1.08995 * 109.47286 * 300.00101 * 6 4 3 37 37 H 1.09000 * 109.47042 * 60.00366 * 6 4 3 38 38 H 1.08997 * 109.46812 * 179.97438 * 6 4 3 39 39 H 1.00898 * 111.00336 * 56.04849 * 7 4 3 40 40 H 1.08992 * 109.46950 * 59.99491 * 8 7 4 41 41 H 1.09004 * 109.46612 * 299.99424 * 8 7 4 42 42 H 0.96696 * 113.99731 * 59.99663 * 11 9 8 43 43 H 1.08997 * 109.46979 * 55.00501 * 12 9 8 44 44 H 1.08992 * 109.47112 * 294.99780 * 12 9 8 45 45 H 1.08000 * 119.90560 * 0.02562 * 15 14 13 46 46 H 1.08003 * 120.09115 * 180.25228 * 16 15 14 47 47 H 0.96999 * 119.99379 * 180.02562 * 21 20 18 48 48 H 1.07998 * 120.09104 * 179.97438 * 26 17 16 49 49 H 1.07999 * 119.90304 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 6 4.3427 1.1752 1.1807 6 6 4.0871 3.4253 0.1250 7 7 4.2943 1.4136 -1.2561 8 6 5.7554 1.5622 -1.2920 9 6 6.2925 1.0036 -2.6112 10 1 5.9573 -0.0264 -2.7330 11 8 5.8053 1.7946 -3.6970 12 6 7.8219 1.0439 -2.5969 13 8 8.3260 0.4164 -3.7778 14 6 9.6742 0.3669 -3.9214 15 6 10.4959 0.9199 -2.9417 16 6 11.8527 0.8700 -3.0762 17 6 12.4218 0.2669 -4.2145 18 6 13.8251 0.2163 -4.3644 19 1 14.4630 0.2585 -3.4940 20 6 14.3889 0.1114 -5.6404 21 7 13.6761 0.4084 -6.6972 22 14 16.1589 -0.4525 -5.8360 23 1 16.3107 -1.8144 -5.2636 24 1 16.5137 -0.4785 -7.2777 25 1 17.0597 0.4877 -5.1219 26 6 11.5838 -0.2850 -5.2027 27 6 10.2290 -0.2319 -5.0502 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8031 2.2371 0.8899 32 1 1.8031 2.2370 -0.8900 33 1 5.4258 1.2977 1.1800 34 1 3.9332 1.5658 2.1122 35 1 4.0971 0.1170 1.0912 36 1 3.6593 3.9700 -0.7166 37 1 3.6776 3.8158 1.0566 38 1 5.1701 3.5481 0.1250 39 1 3.8657 1.8582 -2.0541 40 1 6.1967 1.0146 -0.4594 41 1 6.0153 2.6177 -1.2113 42 1 6.0658 2.7248 -3.6539 43 1 8.1911 0.5147 -1.7185 44 1 8.1578 2.0803 -2.5646 45 1 10.0578 1.3857 -2.0714 46 1 12.4885 1.2956 -2.3138 47 1 14.0669 0.3353 -7.5819 48 1 12.0124 -0.7488 -6.0788 49 1 9.5850 -0.6544 -5.8073 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934670030.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:28 Heat of formation + Delta-G solvation = -75.259888 kcal Electronic energy + Delta-G solvation = -26520.662933 eV Core-core repulsion = 22766.782848 eV Total energy + Delta-G solvation = -3753.880085 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.166 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.38265 -38.62420 -37.12335 -35.96215 -33.30157 -32.42627 -30.15007 -29.40449 -29.27337 -28.80508 -27.87826 -27.69396 -25.28523 -24.33080 -21.95414 -20.67581 -20.59036 -19.66103 -17.34362 -17.31246 -16.74240 -16.43265 -16.27751 -15.83825 -15.27340 -15.08531 -15.00137 -14.44870 -14.22566 -14.00616 -13.91649 -13.77844 -13.49615 -13.32096 -13.19636 -12.91318 -12.71998 -12.29318 -12.20614 -12.12714 -12.09233 -11.81725 -11.73494 -11.56763 -11.35655 -11.22423 -11.10853 -10.94813 -10.75572 -10.55612 -10.12975 -9.99999 -9.94164 -9.81032 -9.31596 -9.00143 -8.65655 -7.78087 -7.62653 -7.01390 -6.70756 -4.24017 1.41380 2.37589 2.80514 2.96679 3.08939 3.11319 3.23738 3.50225 3.96257 4.18337 4.21710 4.42036 4.51267 4.63430 4.69184 4.80213 4.83792 4.89458 4.95768 5.03593 5.12366 5.15866 5.21541 5.35062 5.36994 5.38044 5.43943 5.56480 5.60813 5.65169 5.69223 5.75106 6.02893 6.07362 6.11061 6.25064 6.71116 6.75809 6.99232 7.12703 7.14775 7.20157 7.47934 7.57158 7.65346 7.80805 8.01924 8.22148 8.47242 8.67016 8.91320 9.00447 10.23678 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030716 B = 0.001705 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.347175 B =16421.354964 C =16646.814961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.215 6.215 3 C -0.078 4.078 4 C 0.126 3.874 5 C -0.144 4.144 6 C -0.180 4.180 7 N -0.663 5.663 8 C 0.028 3.972 9 C 0.113 3.887 10 H 0.115 0.885 11 O -0.550 6.550 12 C 0.040 3.960 13 O -0.317 6.317 14 C -0.008 4.008 15 C -0.169 4.169 16 C -0.199 4.199 17 C 0.087 3.913 18 C -0.464 4.464 19 H 0.076 0.924 20 C 0.075 3.925 21 N -0.799 5.799 22 Si 0.908 3.092 23 H -0.264 1.264 24 H -0.279 1.279 25 H -0.267 1.267 26 C -0.133 4.133 27 C -0.119 4.119 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.349 0.651 40 H 0.087 0.913 41 H 0.038 0.962 42 H 0.368 0.632 43 H 0.058 0.942 44 H 0.050 0.950 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.280 0.720 48 H 0.126 0.874 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.616 4.720 13.032 25.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.011 5.989 3 C -0.227 4.227 4 C 0.033 3.967 5 C -0.202 4.202 6 C -0.241 4.241 7 N -0.296 5.296 8 C -0.102 4.102 9 C 0.053 3.947 10 H 0.133 0.867 11 O -0.354 6.354 12 C -0.037 4.037 13 O -0.232 6.232 14 C -0.051 4.051 15 C -0.187 4.187 16 C -0.218 4.218 17 C 0.085 3.915 18 C -0.494 4.494 19 H 0.094 0.906 20 C -0.142 4.142 21 N -0.425 5.425 22 Si 0.732 3.268 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.152 4.152 27 C -0.138 4.138 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.117 0.883 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.168 0.832 40 H 0.105 0.895 41 H 0.056 0.944 42 H 0.214 0.786 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.110 0.890 46 H 0.112 0.888 47 H 0.091 0.909 48 H 0.143 0.857 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -21.321 2.560 12.674 24.935 hybrid contribution 0.414 2.616 0.143 2.653 sum -20.907 5.177 12.817 25.064 Atomic orbital electron populations 1.23475 0.96713 1.06305 1.04370 1.87264 1.04242 1.09584 1.97810 1.23514 0.98602 0.96036 1.04534 1.20657 0.91301 0.92771 0.91921 1.21957 1.00637 1.01738 0.95835 1.22573 1.02614 0.96416 1.02501 1.60519 1.03897 1.61780 1.03362 1.22638 0.89177 0.99466 0.98882 1.21965 0.90504 0.97147 0.85085 0.86689 1.86656 1.77152 1.23850 1.47791 1.23083 0.94065 0.97452 0.89147 1.85894 1.20554 1.76387 1.40396 1.18624 0.80248 1.08195 0.98059 1.20388 0.94852 1.05195 0.98311 1.20546 0.93042 1.06934 1.01307 1.17594 0.93622 0.89416 0.90852 1.19422 0.91852 1.45241 0.92922 0.90618 1.25875 1.00148 0.92609 0.95554 1.69831 1.38385 1.34678 0.99595 0.86383 0.82213 0.80376 0.77809 1.18882 1.20391 1.19133 1.20983 0.90846 1.02135 1.01279 1.19849 0.95184 1.03052 0.95720 0.91067 0.90835 0.88267 0.89931 0.90315 0.92221 0.92199 0.90396 0.92385 0.91861 0.91492 0.83176 0.89482 0.94398 0.78567 0.92408 0.93186 0.89002 0.88812 0.90869 0.85663 0.88412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 10.76 101.05 1.09 0.23 16 2 S -0.22 -1.90 20.37 -107.50 -2.19 -4.09 16 3 C -0.08 -0.55 5.09 37.16 0.19 -0.36 16 4 C 0.13 0.94 0.66 -131.60 -0.09 0.85 16 5 C -0.14 -1.14 7.92 37.16 0.29 -0.84 16 6 C -0.18 -1.14 8.23 37.16 0.31 -0.83 16 7 N -0.66 -5.99 5.80 -99.97 -0.58 -6.57 16 8 C 0.03 0.26 4.57 -3.82 -0.02 0.24 16 9 C 0.11 1.41 3.49 -26.73 -0.09 1.32 16 10 H 0.12 1.64 8.14 -51.93 -0.42 1.21 16 11 O -0.55 -7.19 12.83 -40.08 -0.51 -7.71 16 12 C 0.04 0.61 4.36 37.16 0.16 0.77 16 13 O -0.32 -6.58 10.09 -23.57 -0.24 -6.82 16 14 C -0.01 -0.19 6.71 -38.78 -0.26 -0.45 16 15 C -0.17 -3.83 8.96 -39.83 -0.36 -4.19 16 16 C -0.20 -4.91 9.74 -39.25 -0.38 -5.29 16 17 C 0.09 2.36 5.57 -106.81 -0.60 1.76 16 18 C -0.46 -12.41 9.04 -37.83 -0.34 -12.75 16 19 H 0.08 1.94 7.91 -52.49 -0.41 1.52 16 20 C 0.07 1.90 5.13 -17.34 -0.09 1.81 16 21 N -0.80 -20.86 10.96 55.54 0.61 -20.25 16 22 Si 0.91 18.81 29.59 -169.99 -5.03 13.77 16 23 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 24 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 25 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 26 C -0.13 -3.52 8.64 -39.25 -0.34 -3.86 16 27 C -0.12 -2.95 9.92 -39.83 -0.40 -3.34 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.10 0.56 8.14 -51.92 -0.42 0.13 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.53 8.14 -51.92 -0.42 0.10 16 33 H 0.06 0.47 6.40 -51.93 -0.33 0.14 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.74 6.72 -51.93 -0.35 0.39 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.45 6.41 -51.93 -0.33 0.12 16 39 H 0.35 3.20 8.28 -39.29 -0.33 2.88 16 40 H 0.09 0.83 6.30 -51.93 -0.33 0.50 16 41 H 0.04 0.32 6.30 -51.93 -0.33 -0.01 16 42 H 0.37 3.58 9.04 45.56 0.41 3.99 16 43 H 0.06 0.85 7.66 -51.93 -0.40 0.45 16 44 H 0.05 0.73 7.64 -51.93 -0.40 0.33 16 45 H 0.09 1.79 6.27 -52.49 -0.33 1.46 16 46 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 47 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 48 H 0.13 3.39 6.16 -52.49 -0.32 3.06 16 49 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 LS Contribution 402.55 15.07 6.07 6.07 Total: -1.00 -29.77 402.55 -10.02 -39.80 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -7.23 Total: 10.73 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: -0.92 Total: -24.94 kcal Atomic # 7 Polarization: -26.85 SS G_CDS: 0.03 Total: -26.82 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.75 Total: -14.53 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.77 kcal Atomic # 16 Polarization: -1.90 SS G_CDS: -2.19 Total: -4.09 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -29.77 -10.02 -39.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934670030.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.462 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds