Wall clock time and date at job start Tue Mar 31 2020 22:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81395 * 103.00034 * 2 1 4 4 C 1.53003 * 109.47341 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46721 * 304.99787 * 4 3 2 6 6 C 1.52998 * 109.47065 * 184.99595 * 4 3 2 7 7 N 1.46900 * 109.47114 * 64.99733 * 4 3 2 8 8 C 1.46905 * 110.99894 * 180.02562 * 7 4 3 9 9 C 1.52995 * 109.47069 * 179.97438 * 8 7 4 10 10 H 1.09003 * 109.47429 * 304.99911 * 9 8 7 11 11 O 1.42904 * 109.47383 * 64.99654 * 9 8 7 12 12 C 1.52999 * 109.47064 * 184.99671 * 9 8 7 13 13 O 1.42906 * 109.47017 * 174.99934 * 12 9 8 14 14 C 1.35672 * 116.99791 * 180.02562 * 13 12 9 15 15 C 1.39311 * 119.81899 * 359.72420 * 14 13 12 16 16 C 1.36438 * 120.18358 * 179.76209 * 15 14 13 17 17 C 1.40830 * 119.81289 * 0.51455 * 16 15 14 18 18 C 1.41218 * 120.17970 * 179.72046 * 17 16 15 19 19 H 1.07998 * 120.00072 * 24.56905 * 18 17 16 20 20 C 1.39890 * 120.00080 * 204.56816 * 18 17 16 21 21 N 1.30886 * 119.99515 * 17.93469 * 20 18 17 22 22 Si 1.86792 * 120.00234 * 197.93138 * 20 18 17 23 23 H 1.48508 * 109.47014 * 59.99897 * 22 20 18 24 24 H 1.48495 * 109.47153 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47147 * 300.00398 * 22 20 18 26 26 C 1.40830 * 119.63994 * 359.73973 * 17 16 15 27 27 C 1.36440 * 119.81285 * 359.97438 * 26 17 16 28 28 H 1.08996 * 109.47565 * 299.99944 * 1 2 3 29 29 H 1.08997 * 109.47184 * 60.00507 * 1 2 3 30 30 H 1.09006 * 109.47166 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47536 * 59.99825 * 3 2 1 32 32 H 1.09002 * 109.46905 * 299.99927 * 3 2 1 33 33 H 1.08999 * 109.47119 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.47000 * 299.99554 * 5 4 3 35 35 H 1.09002 * 109.47463 * 60.00101 * 5 4 3 36 36 H 1.08995 * 109.47286 * 300.00101 * 6 4 3 37 37 H 1.09000 * 109.47042 * 60.00366 * 6 4 3 38 38 H 1.08997 * 109.46812 * 179.97438 * 6 4 3 39 39 H 1.00898 * 111.00336 * 56.04849 * 7 4 3 40 40 H 1.08992 * 109.46950 * 59.99491 * 8 7 4 41 41 H 1.09004 * 109.46612 * 299.99424 * 8 7 4 42 42 H 0.96696 * 113.99731 * 59.99663 * 11 9 8 43 43 H 1.08997 * 109.46979 * 55.00501 * 12 9 8 44 44 H 1.08992 * 109.47112 * 294.99780 * 12 9 8 45 45 H 1.08000 * 119.90560 * 0.02562 * 15 14 13 46 46 H 1.08003 * 120.09115 * 180.25228 * 16 15 14 47 47 H 0.96999 * 119.99379 * 180.02562 * 21 20 18 48 48 H 1.07998 * 120.09104 * 179.97438 * 26 17 16 49 49 H 1.07999 * 119.90304 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 6 4.3427 1.1752 1.1807 6 6 4.0871 3.4253 0.1250 7 7 4.2943 1.4136 -1.2561 8 6 5.7554 1.5622 -1.2920 9 6 6.2925 1.0036 -2.6112 10 1 5.9573 -0.0264 -2.7330 11 8 5.8053 1.7946 -3.6970 12 6 7.8219 1.0439 -2.5969 13 8 8.3260 0.4164 -3.7778 14 6 9.6742 0.3669 -3.9214 15 6 10.4959 0.9199 -2.9417 16 6 11.8527 0.8700 -3.0762 17 6 12.4218 0.2669 -4.2145 18 6 13.8251 0.2163 -4.3644 19 1 14.4630 0.2585 -3.4940 20 6 14.3889 0.1114 -5.6404 21 7 13.6761 0.4084 -6.6972 22 14 16.1589 -0.4525 -5.8360 23 1 16.3107 -1.8144 -5.2636 24 1 16.5137 -0.4785 -7.2777 25 1 17.0597 0.4877 -5.1219 26 6 11.5838 -0.2850 -5.2027 27 6 10.2290 -0.2319 -5.0502 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8031 2.2371 0.8899 32 1 1.8031 2.2370 -0.8900 33 1 5.4258 1.2977 1.1800 34 1 3.9332 1.5658 2.1122 35 1 4.0971 0.1170 1.0912 36 1 3.6593 3.9700 -0.7166 37 1 3.6776 3.8158 1.0566 38 1 5.1701 3.5481 0.1250 39 1 3.8657 1.8582 -2.0541 40 1 6.1967 1.0146 -0.4594 41 1 6.0153 2.6177 -1.2113 42 1 6.0658 2.7248 -3.6539 43 1 8.1911 0.5147 -1.7185 44 1 8.1578 2.0803 -2.5646 45 1 10.0578 1.3857 -2.0714 46 1 12.4885 1.2956 -2.3138 47 1 14.0669 0.3353 -7.5819 48 1 12.0124 -0.7488 -6.0788 49 1 9.5850 -0.6544 -5.8073 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934670030.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:28 Heat of formation + Delta-G solvation = -94.048397 kcal Electronic energy + Delta-G solvation = -26521.477664 eV Core-core repulsion = 22766.782848 eV Total energy + Delta-G solvation = -3754.694816 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.166 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.69662 -39.74347 -38.43405 -37.39331 -35.17797 -33.24144 -31.82063 -31.01355 -30.25956 -29.85928 -28.41597 -28.25800 -26.86733 -25.69353 -23.24685 -22.45865 -22.18138 -20.30280 -19.24870 -18.73902 -17.73717 -17.48225 -17.33122 -17.01667 -16.49343 -16.09550 -15.88937 -15.72876 -15.56773 -15.28119 -14.86506 -14.60781 -14.55286 -14.26819 -14.07065 -13.95905 -13.90607 -13.79497 -13.49092 -13.32865 -13.08563 -12.83055 -12.78091 -12.71538 -12.63885 -12.40781 -12.32763 -12.15214 -11.97995 -11.72931 -11.64065 -11.57944 -11.21305 -10.97800 -10.86348 -10.69659 -9.56151 -9.31044 -8.92261 -8.59120 -8.44336 -6.22372 0.86093 0.95717 1.02834 1.40013 1.50992 1.55277 1.83484 2.23095 2.39799 2.73172 3.21610 3.47774 3.65846 3.70495 3.92421 3.98204 4.03221 4.08397 4.16572 4.29160 4.34522 4.35978 4.37240 4.38875 4.44994 4.47167 4.57861 4.66754 4.72679 4.85338 4.87691 4.92486 4.96709 5.03099 5.05274 5.09585 5.21913 5.24501 5.28704 5.41475 5.58997 5.64630 5.88681 6.05796 6.06782 6.26553 6.46419 6.56916 6.78790 6.83637 6.95288 7.10790 8.37369 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030716 B = 0.001705 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.347175 B =16421.354964 C =16646.814961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.278 6.278 3 C -0.064 4.064 4 C 0.127 3.873 5 C -0.142 4.142 6 C -0.175 4.175 7 N -0.673 5.673 8 C 0.041 3.959 9 C 0.124 3.876 10 H 0.094 0.906 11 O -0.566 6.566 12 C 0.031 3.969 13 O -0.332 6.332 14 C 0.001 3.999 15 C -0.165 4.165 16 C -0.207 4.207 17 C 0.053 3.947 18 C -0.500 4.500 19 H 0.077 0.923 20 C 0.033 3.967 21 N -0.832 5.832 22 Si 0.982 3.018 23 H -0.261 1.261 24 H -0.269 1.269 25 H -0.259 1.259 26 C -0.152 4.152 27 C -0.135 4.135 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.348 0.652 40 H 0.088 0.912 41 H 0.056 0.944 42 H 0.383 0.617 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.130 0.870 46 H 0.107 0.893 47 H 0.287 0.713 48 H 0.109 0.891 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.402 6.042 14.503 27.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S -0.052 6.052 3 C -0.213 4.213 4 C 0.035 3.965 5 C -0.200 4.200 6 C -0.236 4.236 7 N -0.306 5.306 8 C -0.088 4.088 9 C 0.065 3.935 10 H 0.112 0.888 11 O -0.372 6.372 12 C -0.045 4.045 13 O -0.248 6.248 14 C -0.043 4.043 15 C -0.183 4.183 16 C -0.226 4.226 17 C 0.051 3.949 18 C -0.529 4.529 19 H 0.095 0.905 20 C -0.181 4.181 21 N -0.458 5.458 22 Si 0.803 3.197 23 H -0.186 1.186 24 H -0.194 1.194 25 H -0.183 1.183 26 C -0.172 4.172 27 C -0.154 4.154 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.167 0.833 40 H 0.106 0.894 41 H 0.074 0.926 42 H 0.232 0.768 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.147 0.853 46 H 0.125 0.875 47 H 0.098 0.902 48 H 0.127 0.873 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -22.135 3.901 14.163 26.566 hybrid contribution 0.440 2.247 -0.253 2.303 sum -21.695 6.148 13.910 26.495 Atomic orbital electron populations 1.23461 0.93962 1.06839 1.05262 1.87482 1.07470 1.12294 1.97976 1.23492 0.98282 0.94094 1.05426 1.20688 0.91483 0.93491 0.90829 1.21932 1.00651 1.00761 0.96630 1.22511 1.02527 0.95226 1.03307 1.60479 1.03561 1.62485 1.04070 1.22458 0.89494 1.00185 0.96696 1.21808 0.88546 0.96520 0.86655 0.88792 1.86623 1.77224 1.25146 1.48252 1.23482 0.95715 0.97866 0.87452 1.85887 1.18836 1.76955 1.43077 1.18694 0.81710 1.06611 0.97317 1.20698 0.94043 1.04397 0.99202 1.20802 0.94272 1.06621 1.00953 1.17964 0.94313 0.90555 0.92042 1.19690 0.92156 1.47245 0.93851 0.90487 1.26750 1.04690 0.91927 0.94728 1.69893 1.40475 1.35237 1.00234 0.85249 0.76468 0.79783 0.78174 1.18590 1.19364 1.18296 1.20896 0.91694 1.03359 1.01253 1.20013 0.94845 1.03679 0.96894 0.89775 0.90269 0.87969 0.88437 0.89877 0.92308 0.91072 0.92249 0.91937 0.90771 0.91702 0.83275 0.89403 0.92641 0.76807 0.91381 0.91702 0.85271 0.87522 0.90216 0.87282 0.87676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 10.76 113.37 1.22 -0.16 16 2 S -0.28 -4.71 20.37 -56.49 -1.15 -5.86 16 3 C -0.06 -0.78 5.09 71.98 0.37 -0.41 16 4 C 0.13 1.63 0.66 3.53 0.00 1.63 16 5 C -0.14 -2.02 7.92 71.98 0.57 -1.45 16 6 C -0.18 -1.70 8.23 71.98 0.59 -1.11 16 7 N -0.67 -11.11 5.80 -470.18 -2.73 -13.83 16 8 C 0.04 0.69 4.57 86.30 0.39 1.08 16 9 C 0.12 2.94 3.49 30.59 0.11 3.05 16 10 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 11 O -0.57 -13.92 12.83 -144.34 -1.85 -15.77 16 12 C 0.03 0.89 4.36 71.98 0.31 1.20 16 13 O -0.33 -13.43 10.09 -85.26 -0.86 -14.29 16 14 C 0.00 0.03 6.71 22.79 0.15 0.18 16 15 C -0.16 -7.25 8.96 22.11 0.20 -7.05 16 16 C -0.21 -10.18 9.74 22.48 0.22 -9.97 16 17 C 0.05 2.95 5.57 -21.28 -0.12 2.83 16 18 C -0.50 -27.29 9.04 23.40 0.21 -27.08 16 19 H 0.08 4.01 7.91 -2.91 -0.02 3.99 16 20 C 0.03 1.69 5.13 85.23 0.44 2.13 16 21 N -0.83 -44.48 10.96 21.82 0.24 -44.24 16 22 Si 0.98 38.72 29.59 68.60 2.03 40.75 16 23 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 24 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 25 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 26 C -0.15 -8.36 8.64 22.48 0.19 -8.17 16 27 C -0.14 -6.84 9.92 22.11 0.22 -6.62 16 28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 0.83 6.40 -2.39 -0.02 0.81 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.06 1.09 6.72 -2.39 -0.02 1.07 16 36 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.06 0.67 6.41 -2.39 -0.02 0.66 16 39 H 0.35 5.83 8.28 -89.70 -0.74 5.09 16 40 H 0.09 1.49 6.30 -2.39 -0.02 1.47 16 41 H 0.06 0.75 6.30 -2.38 -0.02 0.74 16 42 H 0.38 6.62 9.04 -74.06 -0.67 5.95 16 43 H 0.07 1.83 7.66 -2.39 -0.02 1.81 16 44 H 0.06 1.69 7.64 -2.39 -0.02 1.67 16 45 H 0.13 4.62 6.27 -2.91 -0.02 4.60 16 46 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 47 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 48 H 0.11 6.20 6.16 -2.91 -0.02 6.19 16 49 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 Total: -1.00 -65.53 402.55 0.31 -65.22 By element: Atomic # 1 Polarization: 38.38 SS G_CDS: -0.46 Total: 37.92 kcal Atomic # 6 Polarization: -54.99 SS G_CDS: 5.08 Total: -49.90 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -2.49 Total: -58.07 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -2.71 Total: -30.06 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Atomic # 16 Polarization: -4.71 SS G_CDS: -1.15 Total: -5.86 kcal Total: -65.53 0.31 -65.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934670030.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.829 kcal (2) G-P(sol) polarization free energy of solvation -65.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds