Wall clock time and date at job start Tue Mar 31 2020 22:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43190 * 179.97438 * 2 1 4 4 C 1.39715 * 120.00132 * 1.39173 * 3 2 1 5 5 C 1.37598 * 120.00972 * 180.02562 * 4 3 2 6 6 C 1.39749 * 119.99293 * 359.97438 * 5 4 3 7 7 C 1.47687 * 120.00342 * 180.02562 * 6 5 4 8 8 O 1.21568 * 120.00218 * 130.49711 * 7 6 5 9 9 N 1.34785 * 119.99564 * 310.49091 * 7 6 5 10 10 C 1.47075 * 120.87653 * 183.53691 * 9 7 6 11 11 C 1.53698 * 108.27309 * 128.75702 * 10 9 7 12 12 N 1.46899 * 109.25680 * 54.08207 * 11 10 9 13 13 C 1.46898 * 110.99819 * 172.60621 * 12 11 10 14 14 C 1.53950 * 113.74565 * 43.04323 * 13 12 11 15 15 N 1.47814 * 86.03966 * 222.08450 * 14 13 12 16 16 C 1.36926 * 134.45546 * 204.64893 * 15 14 13 17 17 H 1.08004 * 119.99998 * 179.86622 * 16 15 14 18 18 C 1.38814 * 120.00168 * 359.85514 * 16 15 14 19 19 N 1.31613 * 119.99961 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00021 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46847 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46829 * 120.00557 * 20 18 16 23 23 H 1.48495 * 109.46932 * 240.00379 * 20 18 16 24 24 C 1.47583 * 91.05071 * 24.54474 * 15 14 13 25 25 C 1.46894 * 111.26712 * 296.75540 * 12 11 10 26 26 C 1.47073 * 120.88320 * 3.81527 * 9 7 6 27 27 C 1.39741 * 119.99179 * 359.97438 * 6 5 4 28 28 C 1.37596 * 120.00106 * 0.04573 * 27 6 5 29 29 H 4.51948 * 14.06622 * 359.97438 * 4 2 1 30 30 H 1.08004 * 119.99270 * 359.97438 * 4 3 2 31 31 H 1.08003 * 120.00535 * 179.69917 * 5 4 3 32 32 H 1.09003 * 109.62933 * 248.52252 * 10 9 7 33 33 H 1.08996 * 109.63192 * 9.10562 * 10 9 7 34 34 H 1.08994 * 109.64886 * 294.07210 * 11 10 9 35 35 H 1.09009 * 109.43943 * 173.96070 * 11 10 9 36 36 H 1.09002 * 112.94284 * 174.63203 * 13 12 11 37 37 H 1.09008 * 113.76682 * 336.34755 * 14 13 12 38 38 H 1.08993 * 113.76959 * 107.73979 * 14 13 12 39 39 H 0.97000 * 120.00502 * 179.97438 * 19 18 16 40 40 H 1.08999 * 113.76978 * 221.15607 * 24 15 14 41 41 H 1.09003 * 113.76851 * 89.75273 * 24 15 14 42 42 H 1.09007 * 109.49325 * 303.14360 * 25 12 11 43 43 H 1.09000 * 109.49340 * 183.06991 * 25 12 11 44 44 H 1.09003 * 109.62891 * 350.90005 * 26 9 7 45 45 H 1.08996 * 109.62630 * 111.47253 * 26 9 7 46 46 H 1.08003 * 120.00246 * 180.02562 * 27 6 5 47 47 H 1.07994 * 120.00354 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.3050 -1.2086 -0.0294 5 6 4.6810 -1.2082 -0.0289 6 6 5.3792 0.0020 0.0005 7 6 6.8561 0.0027 0.0005 8 8 7.4637 0.7059 -0.7832 9 7 7.5303 -0.7763 0.8696 10 6 8.9988 -0.7335 0.9393 11 6 9.4058 -0.5284 2.4072 12 7 8.7752 -1.5657 3.2343 13 6 9.2748 -1.5142 4.6148 14 6 9.3896 -0.0866 5.1796 15 7 10.6796 -0.5267 5.7514 16 6 11.4455 -0.1239 6.8126 17 1 12.3768 -0.6265 7.0280 18 6 11.0250 0.9307 7.6113 19 7 9.8899 1.5430 7.3490 20 14 12.0702 1.4807 9.0586 21 1 13.2894 0.6367 9.1377 22 1 12.4628 2.9009 8.8742 23 1 11.2893 1.3421 10.3141 24 6 10.8093 -1.5757 4.7214 25 6 7.3107 -1.4573 3.2001 26 6 6.8174 -1.6960 1.7691 27 6 4.6799 1.2114 0.0288 28 6 3.3039 1.2107 0.0287 29 1 -1.0501 -0.0011 0.0005 30 1 2.7653 -2.1439 -0.0517 31 1 5.2214 -2.1432 -0.0467 32 1 9.4104 -1.6728 0.5699 33 1 9.3701 0.0947 0.3359 34 1 9.0780 0.4549 2.7444 35 1 10.4898 -0.6009 2.4966 36 1 8.7606 -2.2088 5.2790 37 1 9.4881 0.6824 4.4133 38 1 8.6342 0.1516 5.9283 39 1 9.5958 2.2797 7.9073 40 1 11.1854 -2.5240 5.1051 41 1 11.3258 -1.2450 3.8202 42 1 7.0120 -0.4610 3.5263 43 1 6.8750 -2.2037 3.8643 44 1 5.7458 -1.5044 1.7143 45 1 7.0234 -2.7259 1.4778 46 1 5.2193 2.1468 0.0511 47 1 2.7634 2.1453 0.0510 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941512627.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:41 Heat of formation + Delta-G solvation = 133.626428 kcal Electronic energy + Delta-G solvation = -28736.569523 eV Core-core repulsion = 24888.596228 eV Total energy + Delta-G solvation = -3847.973295 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.77972 -39.38473 -38.50040 -36.64073 -34.32962 -33.70567 -31.89738 -31.67596 -31.25477 -30.36266 -28.10737 -26.39727 -24.90717 -24.74230 -23.70681 -22.87041 -22.63212 -21.39796 -19.71827 -19.38451 -18.48049 -17.57020 -16.81369 -16.48775 -16.08608 -15.72820 -15.52342 -15.14047 -14.88156 -14.84777 -14.71914 -14.14798 -13.95326 -13.85988 -13.74579 -13.56003 -12.96641 -12.59960 -12.49987 -12.28226 -11.95124 -11.83774 -11.75172 -11.65711 -11.44117 -11.25723 -10.97632 -10.85396 -10.83414 -10.70138 -10.60821 -10.17705 -9.99104 -9.89063 -9.51942 -9.36941 -8.92555 -8.82741 -8.72350 -7.85419 -6.87564 -5.78821 -3.11506 0.29079 0.98109 2.29295 2.33618 2.69187 2.94273 3.37112 3.42413 3.45116 3.59060 3.82469 4.09096 4.23915 4.47106 4.49789 4.54141 4.85019 4.94180 5.00987 5.10851 5.13415 5.16490 5.22921 5.30301 5.39876 5.44444 5.48156 5.56139 5.59974 5.65950 5.73059 5.84831 5.90613 5.92616 5.98768 6.02580 6.06888 6.15898 6.33548 6.37059 6.44573 6.54332 6.61305 6.98723 7.11162 7.18516 7.25854 7.35790 7.50695 7.59551 7.95626 7.99147 9.01995 9.68635 10.57048 11.37914 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015673 B = 0.002391 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.117693 B =11709.973279 C =12453.717138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.153 4.153 3 C 0.025 3.975 4 C -0.100 4.100 5 C -0.090 4.090 6 C -0.112 4.112 7 C 0.558 3.442 8 O -0.536 6.536 9 N -0.602 5.602 10 C 0.118 3.882 11 C 0.035 3.965 12 N -0.529 5.529 13 C 0.035 3.965 14 C 0.133 3.867 15 N -0.609 5.609 16 C -0.221 4.221 17 H 0.081 0.919 18 C -0.009 4.009 19 N -0.921 5.921 20 Si 0.912 3.088 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.124 3.876 25 C 0.041 3.959 26 C 0.102 3.898 27 C -0.067 4.067 28 C -0.098 4.098 29 H 0.225 0.775 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.029 0.971 38 H 0.069 0.931 39 H 0.252 0.748 40 H 0.046 0.954 41 H 0.038 0.962 42 H 0.042 0.958 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.137 0.863 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.399 -7.198 -16.229 24.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.153 4.153 3 C 0.025 3.975 4 C -0.118 4.118 5 C -0.108 4.108 6 C -0.115 4.115 7 C 0.346 3.654 8 O -0.414 6.414 9 N -0.335 5.335 10 C -0.004 4.004 11 C -0.093 4.093 12 N -0.254 5.254 13 C -0.074 4.074 14 C 0.006 3.994 15 N -0.336 5.336 16 C -0.349 4.349 17 H 0.099 0.901 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.217 1.217 24 C -0.002 4.002 25 C -0.088 4.088 26 C -0.021 4.021 27 C -0.086 4.086 28 C -0.116 4.116 29 H 0.242 0.758 30 H 0.151 0.849 31 H 0.155 0.845 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.047 0.953 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.104 0.896 44 H 0.111 0.889 45 H 0.097 0.903 46 H 0.155 0.845 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.821 -7.099 -16.549 23.970 hybrid contribution 0.152 1.237 1.252 1.767 sum -15.669 -5.862 -15.297 22.668 Atomic orbital electron populations 1.24936 0.95797 0.99044 0.98794 1.20007 0.92004 1.01576 1.01709 1.16130 0.86707 0.93832 1.00853 1.21116 0.93634 0.97303 0.99712 1.21258 0.93959 0.97345 0.98269 1.20038 0.93261 0.94572 1.03626 1.18310 0.86946 0.79504 0.80596 1.90799 1.69575 1.41888 1.39137 1.48127 1.07751 1.40406 1.37183 1.21926 0.78262 1.03126 0.97096 1.22705 1.00853 0.94257 0.91519 1.62041 1.04430 1.47024 1.11855 1.24289 0.96734 0.99794 0.86533 1.22918 0.89750 0.91886 0.94842 1.45829 1.22818 1.36777 1.28168 1.19060 1.01697 1.12535 1.01558 0.90115 1.24795 0.97751 0.98354 0.99647 1.69830 1.21624 1.25071 1.40359 0.86046 0.79324 0.78270 0.82136 1.20405 1.21767 1.21692 1.22699 0.92731 0.92915 0.91857 1.22386 0.89428 1.01318 0.95674 1.22232 0.96950 0.93535 0.89336 1.21097 0.93567 0.97506 0.96442 1.21159 0.93660 0.97367 0.99373 0.75808 0.84854 0.84501 0.90624 0.88854 0.93375 0.88773 0.88172 0.95348 0.91294 0.93745 0.93600 0.94465 0.94011 0.89557 0.88922 0.90302 0.84544 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 19.25 29.55 0.57 -0.59 16 2 C -0.15 -1.36 13.23 -38.84 -0.51 -1.87 16 3 C 0.02 0.23 5.73 -106.87 -0.61 -0.38 16 4 C -0.10 -0.81 9.73 -39.26 -0.38 -1.19 16 5 C -0.09 -0.78 7.36 -39.25 -0.29 -1.07 16 6 C -0.11 -1.24 5.04 -104.91 -0.53 -1.77 16 7 C 0.56 7.55 7.24 -12.40 -0.09 7.46 16 8 O -0.54 -9.05 16.50 5.31 0.09 -8.96 16 9 N -0.60 -7.46 3.00 -173.37 -0.52 -7.98 16 10 C 0.12 1.53 6.62 -3.37 -0.02 1.51 16 11 C 0.04 0.53 4.65 -3.46 -0.02 0.51 16 12 N -0.53 -7.82 4.77 -227.93 -1.09 -8.91 16 13 C 0.04 0.64 4.05 -69.90 -0.28 0.36 16 14 C 0.13 3.07 6.81 -2.84 -0.02 3.05 16 15 N -0.61 -15.53 3.70 -177.83 -0.66 -16.19 16 16 C -0.22 -6.20 10.70 -15.06 -0.16 -6.36 16 17 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 18 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 19 N -0.92 -27.47 11.39 55.49 0.63 -26.84 16 20 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 C 0.12 2.50 8.40 -2.96 -0.02 2.47 16 25 C 0.04 0.52 5.55 -3.71 -0.02 0.50 16 26 C 0.10 1.04 5.41 -3.61 -0.02 1.02 16 27 C -0.07 -0.71 9.70 -39.25 -0.38 -1.09 16 28 C -0.10 -0.90 9.73 -39.26 -0.38 -1.28 16 29 H 0.23 0.66 7.80 -54.09 -0.42 0.24 16 30 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 31 H 0.14 0.94 6.95 -52.48 -0.36 0.57 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 1.28 7.08 -51.93 -0.37 0.91 16 34 H 0.05 0.83 6.38 -51.93 -0.33 0.50 16 35 H 0.09 1.46 5.81 -51.92 -0.30 1.16 16 36 H 0.10 1.80 8.11 -51.93 -0.42 1.38 16 37 H 0.03 0.69 5.76 -51.92 -0.30 0.39 16 38 H 0.07 1.80 7.16 -51.93 -0.37 1.42 16 39 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.04 0.73 5.93 -51.93 -0.31 0.42 16 42 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 43 H 0.09 0.97 8.08 -51.93 -0.42 0.55 16 44 H 0.09 0.81 4.67 -51.93 -0.24 0.57 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.14 1.40 8.06 -52.48 -0.42 0.97 16 47 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 381.57 15.07 5.75 5.75 Total: -1.00 -33.96 381.57 -10.45 -44.41 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.36 Total: 0.59 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -3.27 Total: 0.92 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -1.63 Total: -59.91 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.96 -10.45 -44.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941512627.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.036 kcal (2) G-P(sol) polarization free energy of solvation -33.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds