Wall clock time and date at job start Tue Mar 31 2020 22:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43190 * 179.97438 * 2 1 4 4 C 1.39715 * 120.00132 * 1.39173 * 3 2 1 5 5 C 1.37598 * 120.00972 * 180.02562 * 4 3 2 6 6 C 1.39749 * 119.99293 * 359.97438 * 5 4 3 7 7 C 1.47687 * 120.00342 * 180.02562 * 6 5 4 8 8 O 1.21568 * 120.00218 * 130.49711 * 7 6 5 9 9 N 1.34785 * 119.99564 * 310.49091 * 7 6 5 10 10 C 1.47075 * 120.87653 * 183.53691 * 9 7 6 11 11 C 1.53698 * 108.27309 * 128.75702 * 10 9 7 12 12 N 1.46899 * 109.25680 * 54.08207 * 11 10 9 13 13 C 1.46898 * 110.99819 * 172.60621 * 12 11 10 14 14 C 1.53950 * 113.74565 * 43.04323 * 13 12 11 15 15 N 1.47814 * 86.03966 * 222.08450 * 14 13 12 16 16 C 1.36926 * 134.45546 * 204.64893 * 15 14 13 17 17 H 1.08004 * 119.99998 * 179.86622 * 16 15 14 18 18 C 1.38814 * 120.00168 * 359.85514 * 16 15 14 19 19 N 1.31613 * 119.99961 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00021 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46847 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46829 * 120.00557 * 20 18 16 23 23 H 1.48495 * 109.46932 * 240.00379 * 20 18 16 24 24 C 1.47583 * 91.05071 * 24.54474 * 15 14 13 25 25 C 1.46894 * 111.26712 * 296.75540 * 12 11 10 26 26 C 1.47073 * 120.88320 * 3.81527 * 9 7 6 27 27 C 1.39741 * 119.99179 * 359.97438 * 6 5 4 28 28 C 1.37596 * 120.00106 * 0.04573 * 27 6 5 29 29 H 4.51948 * 14.06622 * 359.97438 * 4 2 1 30 30 H 1.08004 * 119.99270 * 359.97438 * 4 3 2 31 31 H 1.08003 * 120.00535 * 179.69917 * 5 4 3 32 32 H 1.09003 * 109.62933 * 248.52252 * 10 9 7 33 33 H 1.08996 * 109.63192 * 9.10562 * 10 9 7 34 34 H 1.08994 * 109.64886 * 294.07210 * 11 10 9 35 35 H 1.09009 * 109.43943 * 173.96070 * 11 10 9 36 36 H 1.09002 * 112.94284 * 174.63203 * 13 12 11 37 37 H 1.09008 * 113.76682 * 336.34755 * 14 13 12 38 38 H 1.08993 * 113.76959 * 107.73979 * 14 13 12 39 39 H 0.97000 * 120.00502 * 179.97438 * 19 18 16 40 40 H 1.08999 * 113.76978 * 221.15607 * 24 15 14 41 41 H 1.09003 * 113.76851 * 89.75273 * 24 15 14 42 42 H 1.09007 * 109.49325 * 303.14360 * 25 12 11 43 43 H 1.09000 * 109.49340 * 183.06991 * 25 12 11 44 44 H 1.09003 * 109.62891 * 350.90005 * 26 9 7 45 45 H 1.08996 * 109.62630 * 111.47253 * 26 9 7 46 46 H 1.08003 * 120.00246 * 180.02562 * 27 6 5 47 47 H 1.07994 * 120.00354 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.3050 -1.2086 -0.0294 5 6 4.6810 -1.2082 -0.0289 6 6 5.3792 0.0020 0.0005 7 6 6.8561 0.0027 0.0005 8 8 7.4637 0.7059 -0.7832 9 7 7.5303 -0.7763 0.8696 10 6 8.9988 -0.7335 0.9393 11 6 9.4058 -0.5284 2.4072 12 7 8.7752 -1.5657 3.2343 13 6 9.2748 -1.5142 4.6148 14 6 9.3896 -0.0866 5.1796 15 7 10.6796 -0.5267 5.7514 16 6 11.4455 -0.1239 6.8126 17 1 12.3768 -0.6265 7.0280 18 6 11.0250 0.9307 7.6113 19 7 9.8899 1.5430 7.3490 20 14 12.0702 1.4807 9.0586 21 1 13.2894 0.6367 9.1377 22 1 12.4628 2.9009 8.8742 23 1 11.2893 1.3421 10.3141 24 6 10.8093 -1.5757 4.7214 25 6 7.3107 -1.4573 3.2001 26 6 6.8174 -1.6960 1.7691 27 6 4.6799 1.2114 0.0288 28 6 3.3039 1.2107 0.0287 29 1 -1.0501 -0.0011 0.0005 30 1 2.7653 -2.1439 -0.0517 31 1 5.2214 -2.1432 -0.0467 32 1 9.4104 -1.6728 0.5699 33 1 9.3701 0.0947 0.3359 34 1 9.0780 0.4549 2.7444 35 1 10.4898 -0.6009 2.4966 36 1 8.7606 -2.2088 5.2790 37 1 9.4881 0.6824 4.4133 38 1 8.6342 0.1516 5.9283 39 1 9.5958 2.2797 7.9073 40 1 11.1854 -2.5240 5.1051 41 1 11.3258 -1.2450 3.8202 42 1 7.0120 -0.4610 3.5263 43 1 6.8750 -2.2037 3.8643 44 1 5.7458 -1.5044 1.7143 45 1 7.0234 -2.7259 1.4778 46 1 5.2193 2.1468 0.0511 47 1 2.7634 2.1453 0.0510 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941512627.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:40 Heat of formation + Delta-G solvation = 112.109323 kcal Electronic energy + Delta-G solvation = -28737.502575 eV Core-core repulsion = 24888.596228 eV Total energy + Delta-G solvation = -3848.906346 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.77658 -40.63918 -39.52661 -37.97405 -35.35672 -34.77311 -33.77660 -32.58005 -32.02222 -31.21679 -29.73830 -27.86735 -26.65702 -25.71695 -24.77936 -24.24865 -23.60588 -22.59263 -20.90149 -19.98317 -19.86893 -18.76191 -18.57669 -17.48648 -16.97881 -16.94381 -16.74342 -16.58434 -16.18556 -15.93224 -15.67412 -15.59058 -15.29707 -14.81675 -14.56660 -14.44673 -14.21240 -13.85834 -13.81391 -13.50653 -13.35704 -13.20890 -13.18691 -12.83879 -12.71776 -12.44903 -12.36989 -12.18429 -12.08175 -11.99567 -11.87506 -11.77875 -11.43658 -11.39877 -11.03596 -10.87133 -10.06435 -9.89109 -9.56207 -9.27826 -8.88152 -7.93422 -5.27687 -0.42944 0.29844 1.41254 1.42706 1.43900 1.54362 1.77216 1.78965 2.10617 2.42818 2.82138 2.93140 3.25534 3.26826 3.40039 3.47070 3.80931 3.81915 3.86886 3.92033 3.99542 4.11037 4.21504 4.26293 4.35517 4.42138 4.45601 4.50612 4.55778 4.61523 4.71285 4.79606 4.87087 4.91422 4.93118 4.95212 4.97480 5.07785 5.20618 5.23347 5.29569 5.32942 5.35868 5.42276 5.46562 5.75623 5.88017 6.01403 6.12490 6.29725 6.56933 6.87878 6.96559 7.57454 8.52631 9.22826 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015673 B = 0.002391 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.117693 B =11709.973279 C =12453.717138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.205 4.205 3 C 0.022 3.978 4 C -0.096 4.096 5 C -0.080 4.080 6 C -0.133 4.133 7 C 0.557 3.443 8 O -0.580 6.580 9 N -0.603 5.603 10 C 0.126 3.874 11 C 0.042 3.958 12 N -0.513 5.513 13 C 0.068 3.932 14 C 0.133 3.867 15 N -0.640 5.640 16 C -0.230 4.230 17 H 0.087 0.913 18 C -0.071 4.071 19 N -0.956 5.956 20 Si 0.980 3.020 21 H -0.262 1.262 22 H -0.295 1.295 23 H -0.290 1.290 24 C 0.126 3.874 25 C 0.037 3.963 26 C 0.108 3.892 27 C -0.081 4.081 28 C -0.104 4.104 29 H 0.260 0.740 30 H 0.159 0.841 31 H 0.161 0.839 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.016 0.984 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.012 0.988 38 H 0.031 0.969 39 H 0.247 0.753 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.017 0.983 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.108 0.892 46 H 0.126 0.874 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.935 -9.979 -16.837 26.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.205 4.205 3 C 0.022 3.978 4 C -0.114 4.114 5 C -0.098 4.098 6 C -0.136 4.136 7 C 0.347 3.653 8 O -0.461 6.461 9 N -0.334 5.334 10 C 0.003 3.997 11 C -0.087 4.087 12 N -0.236 5.236 13 C -0.041 4.041 14 C 0.006 3.994 15 N -0.367 5.367 16 C -0.359 4.359 17 H 0.104 0.896 18 C -0.264 4.264 19 N -0.606 5.606 20 Si 0.808 3.192 21 H -0.186 1.186 22 H -0.223 1.223 23 H -0.217 1.217 24 C 0.001 3.999 25 C -0.092 4.092 26 C -0.013 4.013 27 C -0.100 4.100 28 C -0.122 4.122 29 H 0.276 0.724 30 H 0.177 0.823 31 H 0.178 0.822 32 H 0.117 0.883 33 H 0.099 0.901 34 H 0.034 0.966 35 H 0.107 0.893 36 H 0.129 0.871 37 H 0.029 0.971 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.035 0.965 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.126 0.874 46 H 0.144 0.856 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -17.358 -9.933 -17.172 26.360 hybrid contribution 0.507 2.101 1.389 2.569 sum -16.851 -7.832 -15.783 24.380 Atomic orbital electron populations 1.25840 0.96558 0.96758 0.96137 1.20285 0.92522 1.03769 1.03891 1.16374 0.87486 0.94103 0.99882 1.21410 0.93427 0.97977 0.98574 1.21456 0.94239 0.97103 0.97045 1.19947 0.91750 0.95839 1.06022 1.18715 0.87989 0.78625 0.79998 1.90766 1.70675 1.43605 1.41045 1.48235 1.07566 1.40476 1.37136 1.21799 0.79016 1.03794 0.95046 1.22605 1.00512 0.92674 0.92934 1.62104 1.05946 1.46245 1.09312 1.23847 0.95987 0.95998 0.88300 1.22820 0.88294 0.94699 0.93598 1.46239 1.23452 1.38156 1.28896 1.19482 1.01944 1.12240 1.02238 0.89560 1.25671 0.99125 0.98931 1.02669 1.70035 1.23408 1.25585 1.41535 0.84987 0.78197 0.77443 0.78588 1.18625 1.22265 1.21727 1.22857 0.94198 0.92032 0.90826 1.22562 0.87703 1.00775 0.98126 1.22401 0.97669 0.94352 0.86911 1.21110 0.94256 0.97260 0.97380 1.21270 0.93095 0.98316 0.99488 0.72395 0.82298 0.82152 0.88321 0.90091 0.96621 0.89324 0.87104 0.97051 0.95006 0.94448 0.92003 0.93258 0.96485 0.87277 0.87039 0.87371 0.85597 0.83823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 19.25 74.32 1.43 -0.03 16 2 C -0.20 -3.24 13.23 30.01 0.40 -2.84 16 3 C 0.02 0.37 5.73 -21.32 -0.12 0.25 16 4 C -0.10 -1.33 9.73 22.48 0.22 -1.11 16 5 C -0.08 -1.21 7.36 22.48 0.17 -1.04 16 6 C -0.13 -2.88 5.04 -20.05 -0.10 -2.99 16 7 C 0.56 15.15 7.24 86.74 0.63 15.78 16 8 O -0.58 -20.36 16.50 -3.93 -0.06 -20.42 16 9 N -0.60 -14.36 3.00 -820.67 -2.46 -16.82 16 10 C 0.13 3.19 6.62 86.50 0.57 3.76 16 11 C 0.04 1.25 4.65 86.54 0.40 1.65 16 12 N -0.51 -14.47 4.77 -875.02 -4.17 -18.64 16 13 C 0.07 2.43 4.05 46.67 0.19 2.62 16 14 C 0.13 6.39 6.81 86.44 0.59 6.98 16 15 N -0.64 -33.10 3.70 -716.52 -2.65 -35.75 16 16 C -0.23 -13.09 10.70 84.04 0.90 -12.19 16 17 H 0.09 4.66 7.83 -2.91 -0.02 4.63 16 18 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 19 N -0.96 -59.15 11.39 21.65 0.25 -58.90 16 20 Si 0.98 46.44 29.55 68.60 2.03 48.47 16 21 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 22 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 23 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 24 C 0.13 4.93 8.40 86.49 0.73 5.66 16 25 C 0.04 0.87 5.55 86.38 0.48 1.35 16 26 C 0.11 1.92 5.41 86.35 0.47 2.38 16 27 C -0.08 -1.76 9.70 22.48 0.22 -1.55 16 28 C -0.10 -1.91 9.73 22.48 0.22 -1.69 16 29 H 0.26 0.44 7.80 -4.42 -0.03 0.40 16 30 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16 31 H 0.16 1.59 6.95 -2.91 -0.02 1.57 16 32 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.08 2.29 7.08 -2.39 -0.02 2.27 16 34 H 0.02 0.57 6.38 -2.39 -0.02 0.56 16 35 H 0.09 2.75 5.81 -2.38 -0.01 2.74 16 36 H 0.11 3.79 8.11 -2.39 -0.02 3.77 16 37 H 0.01 0.60 5.76 -2.38 -0.01 0.59 16 38 H 0.03 1.74 7.16 -2.39 -0.02 1.72 16 39 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 40 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.05 1.86 5.93 -2.39 -0.01 1.84 16 42 H 0.02 0.49 8.14 -2.38 -0.02 0.47 16 43 H 0.11 2.14 8.08 -2.39 -0.02 2.12 16 44 H 0.11 1.62 4.67 -2.39 -0.01 1.61 16 45 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 47 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -77.33 381.57 1.75 -75.59 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.98 Total: 13.16 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 7.85 Total: 13.32 kcal Atomic # 7 Polarization: -121.07 SS G_CDS: -9.04 Total: -130.11 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.06 Total: -20.42 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -77.33 1.75 -75.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941512627.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.694 kcal (2) G-P(sol) polarization free energy of solvation -77.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds