Wall clock time and date at job start Tue Mar 31 2020 22:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39643 * 120.48962 * 135.13720 * 3 2 1 5 5 N 1.31748 * 120.88256 * 179.97438 * 4 3 2 6 6 C 1.31734 * 122.03823 * 0.02562 * 5 4 3 7 7 C 1.39599 * 120.88068 * 359.97438 * 6 5 4 8 8 C 1.47858 * 120.49202 * 180.02562 * 7 6 5 9 9 O 1.21555 * 120.00284 * 179.97438 * 8 7 6 10 10 N 1.34780 * 120.00282 * 0.02562 * 8 7 6 11 11 C 1.46497 * 120.00355 * 179.97438 * 10 8 7 12 12 H 1.08994 * 108.96989 * 36.07604 * 11 10 8 13 13 C 1.51981 * 108.20350 * 275.88740 * 11 10 8 14 14 C 1.53813 * 111.08046 * 184.37169 * 13 11 10 15 15 C 1.51614 * 107.02764 * 58.95982 * 14 13 11 16 16 H 1.09004 * 110.50206 * 55.20033 * 15 14 13 17 17 C 1.53061 * 117.50016 * 183.31422 * 15 14 13 18 18 N 1.48658 * 103.44676 * 156.24874 * 17 15 14 19 19 C 1.36929 * 125.78801 * 155.65880 * 18 17 15 20 20 H 1.07998 * 120.00454 * 179.97438 * 19 18 17 21 21 C 1.38818 * 119.99548 * 359.97438 * 19 18 17 22 22 N 1.31613 * 120.00300 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99939 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46963 * 59.99687 * 23 21 19 25 25 H 1.48495 * 109.47133 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46794 * 300.00183 * 23 21 19 27 27 C 1.48244 * 108.42877 * 335.62183 * 18 17 15 28 28 C 1.52327 * 105.86786 * 356.81696 * 27 18 17 29 29 H 1.08996 * 110.24568 * 272.17110 * 28 27 18 30 30 C 1.51446 * 117.44963 * 145.31281 * 28 27 18 31 31 C 1.39678 * 120.49233 * 315.39624 * 3 2 1 32 32 H 4.52740 * 13.92867 * 0.02562 * 4 2 1 33 33 H 1.07995 * 119.55655 * 0.02562 * 4 3 2 34 34 H 1.08001 * 119.55720 * 180.02562 * 6 5 4 35 35 H 0.97002 * 119.99390 * 359.97438 * 10 8 7 36 36 H 1.09002 * 108.19673 * 64.72678 * 13 11 10 37 37 H 1.09001 * 110.48975 * 305.51029 * 13 11 10 38 38 H 1.09004 * 109.94067 * 299.58368 * 14 13 11 39 39 H 1.08995 * 109.94424 * 178.34250 * 14 13 11 40 40 H 1.08993 * 110.62759 * 274.74474 * 17 15 14 41 41 H 1.09000 * 110.62245 * 37.59860 * 17 15 14 42 42 H 0.97001 * 120.00342 * 180.02562 * 22 21 19 43 43 H 1.08998 * 110.17479 * 237.71174 * 27 18 17 44 44 H 1.09005 * 110.16961 * 115.91283 * 27 18 17 45 45 H 1.08990 * 109.94173 * 300.61035 * 30 28 27 46 46 H 1.08999 * 109.93752 * 61.84493 * 30 28 27 47 47 H 1.08004 * 120.91801 * 0.02562 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3141 0.8539 -0.8488 5 7 4.6316 0.8612 -0.8549 6 6 5.3384 0.0735 -0.0705 7 6 4.7118 -0.8109 0.8093 8 6 5.5136 -1.6908 1.6863 9 8 4.9587 -2.4572 2.4494 10 7 6.8597 -1.6425 1.6403 11 6 7.6541 -2.5140 2.5096 12 1 7.1470 -3.4737 2.6080 13 6 7.7856 -1.8399 3.8654 14 6 8.7010 -2.6495 4.7993 15 6 10.0511 -2.7533 4.1172 16 1 10.4313 -1.7620 3.8704 17 6 11.1316 -3.5858 4.8116 18 7 12.0368 -3.9750 3.6984 19 6 13.3592 -4.3084 3.8210 20 1 13.9315 -4.5780 2.9457 21 6 13.9642 -4.2998 5.0703 22 7 13.2666 -3.9718 6.1371 23 14 15.7681 -4.7553 5.2377 24 1 16.5921 -3.8174 4.4336 25 1 16.1699 -4.6696 6.6647 26 1 15.9760 -6.1417 4.7478 27 6 11.2648 -3.9419 2.4333 28 6 9.8345 -3.5960 2.8270 29 1 9.2790 -4.5031 3.0651 30 6 9.0344 -2.7390 1.8684 31 6 3.3151 -0.8560 0.8452 32 1 -1.0501 -0.0002 0.0009 33 1 2.7746 1.5171 -1.5086 34 1 6.4170 0.1129 -0.1081 35 1 7.3025 -1.0307 1.0316 36 1 6.7927 -1.7739 4.3104 37 1 8.1914 -0.8344 3.7538 38 1 8.2858 -3.6452 4.9554 39 1 8.8057 -2.1354 5.7547 40 1 11.6650 -2.9851 5.5482 41 1 10.6947 -4.4674 5.2807 42 1 13.6895 -3.9655 7.0101 43 1 11.2957 -4.9176 1.9484 44 1 11.6666 -3.1779 1.7677 45 1 9.5350 -1.7825 1.7184 46 1 8.9217 -3.2543 0.9146 47 1 2.7986 -1.5317 1.5108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980152480.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:38 Heat of formation + Delta-G solvation = 77.731092 kcal Electronic energy + Delta-G solvation = -28171.858075 eV Core-core repulsion = 24321.460977 eV Total energy + Delta-G solvation = -3850.397098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.12702 -39.92840 -38.72084 -35.81902 -34.89738 -33.72133 -32.78175 -31.85893 -31.20842 -30.42495 -28.73311 -26.36188 -25.39261 -24.86631 -24.20833 -22.05408 -21.75953 -20.61686 -19.85246 -19.74174 -19.16527 -17.88207 -17.35126 -16.92323 -16.71556 -15.75697 -15.46442 -15.38276 -14.91304 -14.57125 -14.39722 -14.20708 -13.95961 -13.79311 -13.63598 -13.32051 -13.05924 -12.49409 -12.26272 -12.16187 -12.06501 -11.89926 -11.63804 -11.34100 -11.32362 -10.94733 -10.84940 -10.67673 -10.62328 -10.54261 -10.26846 -10.06592 -9.96542 -9.89840 -9.80378 -9.59720 -9.37781 -9.29468 -9.03394 -8.62878 -6.80626 -5.61996 -3.02906 -0.01150 0.43355 2.14804 2.25171 2.79700 2.83071 3.42147 3.46272 3.47672 3.48305 3.56843 3.82054 4.22074 4.30500 4.36378 4.50363 4.63367 4.75794 4.89189 4.91098 5.14963 5.30133 5.32698 5.38616 5.46020 5.49040 5.53456 5.61178 5.65123 5.67768 5.77416 5.94334 6.03939 6.14300 6.14687 6.23359 6.27787 6.38437 6.41494 6.56487 6.64152 6.69399 6.87374 6.94217 7.04798 7.22436 7.27264 7.57298 7.64043 7.88957 7.91238 8.36331 9.23224 9.84507 10.51393 11.42377 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.035993 B = 0.001884 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.752161 B =14856.797067 C =15247.182034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.156 4.156 3 C -0.045 4.045 4 C 0.145 3.855 5 N -0.481 5.481 6 C 0.142 3.858 7 C -0.180 4.180 8 C 0.562 3.438 9 O -0.530 6.530 10 N -0.718 5.718 11 C 0.151 3.849 12 H 0.090 0.910 13 C -0.125 4.125 14 C -0.098 4.098 15 C -0.116 4.116 16 H 0.068 0.932 17 C 0.164 3.836 18 N -0.608 5.608 19 C -0.221 4.221 20 H 0.076 0.924 21 C -0.012 4.012 22 N -0.923 5.923 23 Si 0.913 3.087 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.286 1.286 27 C 0.145 3.855 28 C -0.105 4.105 29 H 0.070 0.930 30 C -0.108 4.108 31 C 0.004 3.996 32 H 0.228 0.772 33 H 0.166 0.834 34 H 0.165 0.835 35 H 0.398 0.602 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.104 0.896 41 H 0.013 0.987 42 H 0.252 0.748 43 H 0.024 0.976 44 H 0.022 0.978 45 H 0.070 0.930 46 H 0.065 0.935 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.693 10.151 -12.791 27.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.157 4.157 3 C -0.048 4.048 4 C -0.012 4.012 5 N -0.188 5.188 6 C -0.016 4.016 7 C -0.186 4.186 8 C 0.348 3.652 9 O -0.407 6.407 10 N -0.369 5.369 11 C 0.047 3.953 12 H 0.108 0.892 13 C -0.164 4.164 14 C -0.137 4.137 15 C -0.135 4.135 16 H 0.087 0.913 17 C 0.039 3.961 18 N -0.334 5.334 19 C -0.350 4.350 20 H 0.094 0.906 21 C -0.208 4.208 22 N -0.571 5.571 23 Si 0.744 3.256 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.213 1.213 27 C 0.020 3.980 28 C -0.124 4.124 29 H 0.089 0.911 30 C -0.147 4.147 31 C -0.022 4.022 32 H 0.245 0.755 33 H 0.183 0.817 34 H 0.182 0.818 35 H 0.233 0.767 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.122 0.878 41 H 0.031 0.969 42 H 0.062 0.938 43 H 0.042 0.958 44 H 0.040 0.960 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -22.436 10.122 -12.634 27.667 hybrid contribution 0.485 -0.562 0.313 0.806 sum -21.951 9.560 -12.321 26.927 Atomic orbital electron populations 1.24967 0.95751 0.98137 0.98153 1.19554 0.91447 1.02335 1.02325 1.16855 0.88263 0.99757 0.99882 1.23175 0.89662 0.94221 0.94156 1.67738 1.07595 1.21748 1.21717 1.23139 1.00624 0.88943 0.88930 1.20998 0.94760 1.01400 1.01409 1.17939 0.82385 0.82483 0.82404 1.90809 1.71276 1.39221 1.39436 1.46157 1.05554 1.42528 1.42660 1.21161 0.91080 0.93718 0.89293 0.89212 1.21828 1.00216 0.99532 0.94811 1.21243 0.94666 0.99973 0.97830 1.22401 0.95408 0.99396 0.96335 0.91341 1.21608 0.87972 0.95536 0.90938 1.45105 1.06909 1.80350 1.01038 1.19041 0.84301 1.38251 0.93375 0.90619 1.24770 0.98306 1.02276 0.95415 1.69801 1.34482 1.54823 0.98027 0.86171 0.84535 0.78218 0.76678 1.21230 1.21605 1.21292 1.20939 0.89318 0.97455 0.90320 1.21714 0.96197 0.98096 0.96400 0.91123 1.21579 0.93675 1.00782 0.98619 1.21834 0.92432 0.94001 0.93899 0.75519 0.81657 0.81841 0.76656 0.92085 0.91791 0.91848 0.91600 0.87836 0.96914 0.93754 0.95813 0.95992 0.91149 0.91591 0.82962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 19.25 29.55 0.57 -0.30 16 2 C -0.16 -1.22 13.27 -38.84 -0.52 -1.73 16 3 C -0.05 -0.38 5.73 -106.91 -0.61 -0.99 16 4 C 0.15 1.11 10.91 -17.06 -0.19 0.92 16 5 N -0.48 -4.17 10.33 -12.59 -0.13 -4.30 16 6 C 0.14 1.12 10.70 -17.09 -0.18 0.94 16 7 C -0.18 -1.69 5.88 -104.87 -0.62 -2.31 16 8 C 0.56 6.41 7.70 -12.32 -0.09 6.32 16 9 O -0.53 -7.98 16.00 5.32 0.09 -7.89 16 10 N -0.72 -7.04 4.97 -54.82 -0.27 -7.32 16 11 C 0.15 1.82 2.45 -68.01 -0.17 1.65 16 12 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 13 C -0.13 -1.62 5.27 -26.83 -0.14 -1.76 16 14 C -0.10 -1.50 5.72 -27.01 -0.15 -1.65 16 15 C -0.12 -2.09 2.46 -89.90 -0.22 -2.31 16 16 H 0.07 1.26 8.03 -51.93 -0.42 0.85 16 17 C 0.16 3.91 5.56 -2.82 -0.02 3.90 16 18 N -0.61 -15.49 3.45 -170.42 -0.59 -16.08 16 19 C -0.22 -6.18 10.30 -15.06 -0.16 -6.34 16 20 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 21 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 22 N -0.92 -26.93 10.11 55.49 0.56 -26.37 16 23 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 C 0.15 2.96 6.98 -3.43 -0.02 2.94 16 28 C -0.10 -1.73 2.31 -90.36 -0.21 -1.94 16 29 H 0.07 1.20 7.94 -51.93 -0.41 0.79 16 30 C -0.11 -1.34 5.13 -27.08 -0.14 -1.48 16 31 C 0.00 0.04 9.44 -38.47 -0.36 -0.32 16 32 H 0.23 0.41 7.80 -54.09 -0.42 -0.01 16 33 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.16 0.85 6.41 -52.49 -0.34 0.51 16 35 H 0.40 2.76 6.64 -40.82 -0.27 2.49 16 36 H 0.06 0.83 8.06 -51.93 -0.42 0.41 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.98 7.99 -51.93 -0.41 0.57 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.10 2.80 5.93 -51.93 -0.31 2.49 16 41 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16 45 H 0.07 0.83 8.04 -51.93 -0.42 0.41 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.15 1.43 7.73 -52.48 -0.41 1.02 16 LS Contribution 385.43 15.07 5.81 5.81 Total: -1.00 -33.44 385.43 -9.60 -43.04 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.72 Total: 0.93 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -3.33 Total: -4.92 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.43 Total: -54.07 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: 0.09 Total: -7.89 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.44 -9.60 -43.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980152480.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.773 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds