Wall clock time and date at job start Tue Mar 31 2020 22:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39995 * 120.46100 * 252.40219 * 3 2 1 5 5 C 1.38214 * 118.36834 * 180.02562 * 4 3 2 6 6 C 1.39495 * 119.20689 * 359.97438 * 5 4 3 7 7 C 1.47988 * 119.56760 * 179.97438 * 6 5 4 8 8 O 1.21545 * 120.00332 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00064 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00238 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.25249 * 35.52255 * 10 9 7 12 12 C 1.51174 * 109.22532 * 276.06717 * 10 9 7 13 13 C 1.49291 * 117.06491 * 272.34427 * 12 10 9 14 14 C 1.49244 * 121.13948 * 359.39794 * 13 12 10 15 15 H 1.08998 * 107.54701 * 122.24358 * 14 13 12 16 16 C 1.53917 * 111.28789 * 240.29163 * 14 13 12 17 17 N 1.46786 * 107.59408 * 143.13772 * 16 14 13 18 18 C 1.36940 * 125.36566 * 181.12580 * 17 16 14 19 19 H 1.07999 * 119.99896 * 153.63747 * 18 17 16 20 20 C 1.38808 * 119.99816 * 333.64460 * 18 17 16 21 21 N 1.31620 * 120.00365 * 145.69517 * 20 18 17 22 22 Si 1.86803 * 120.00151 * 325.68567 * 20 18 17 23 23 H 1.48503 * 109.46726 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47472 * 240.00604 * 22 20 18 25 25 H 1.48497 * 109.47039 * 120.00298 * 22 20 18 26 26 C 1.46881 * 109.26818 * 1.38668 * 17 16 14 27 27 C 1.52619 * 116.69985 * 0.66370 * 14 13 12 28 28 H 1.09000 * 110.85568 * 90.98877 * 27 14 13 29 29 C 1.52804 * 110.31254 * 327.31678 * 27 14 13 30 30 N 1.32823 * 120.86274 * 0.26040 * 6 5 4 31 31 C 1.31300 * 121.78377 * 359.46682 * 30 6 5 32 32 H 4.52942 * 13.94609 * 359.97438 * 4 2 1 33 33 H 1.07995 * 120.81354 * 359.97438 * 4 3 2 34 34 H 1.07999 * 120.39551 * 179.97438 * 5 4 3 35 35 H 0.97005 * 119.99848 * 0.02562 * 9 7 6 36 36 H 1.08998 * 107.92783 * 34.25869 * 12 10 9 37 37 H 1.09002 * 107.92601 * 150.42921 * 12 10 9 38 38 H 1.08999 * 107.07647 * 236.40087 * 13 12 10 39 39 H 1.08996 * 107.07568 * 122.38770 * 13 12 10 40 40 H 1.09000 * 109.83051 * 23.62106 * 16 14 13 41 41 H 1.09001 * 109.90105 * 262.69164 * 16 14 13 42 42 H 0.97008 * 119.99805 * 5.05504 * 21 20 18 43 43 H 1.09001 * 110.07055 * 101.16243 * 26 17 16 44 44 H 1.09001 * 110.07189 * 222.69686 * 26 17 16 45 45 H 1.08997 * 109.85352 * 184.09938 * 29 27 14 46 46 H 1.09004 * 109.84978 * 305.10006 * 29 27 14 47 47 H 1.07997 * 119.64842 * 180.24861 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3155 0.3658 1.1502 5 6 4.6967 0.3517 1.1020 6 6 5.3327 -0.0235 -0.0816 7 6 6.8112 -0.0408 -0.1423 8 8 7.4633 0.2700 0.8352 9 7 7.4347 -0.4023 -1.2812 10 6 8.8983 -0.4201 -1.3412 11 1 9.2937 -0.7407 -0.3774 12 6 9.4009 0.9722 -1.6479 13 6 9.5190 1.3500 -3.0874 14 6 9.1674 0.3847 -4.1700 15 1 8.3911 0.8449 -4.7813 16 6 10.3773 0.0970 -5.0768 17 7 10.3213 -1.3202 -5.4550 18 6 11.2373 -1.9677 -6.2405 19 1 11.3814 -3.0329 -6.1357 20 6 11.9806 -1.2549 -7.1712 21 7 13.2229 -1.6053 -7.4290 22 14 11.2179 0.2015 -8.0580 23 1 9.8201 0.3879 -7.5923 24 1 11.2229 -0.0518 -9.5212 25 1 12.0043 1.4266 -7.7651 26 6 9.1246 -1.9328 -4.8634 27 6 8.6709 -0.9894 -3.7288 28 1 7.5853 -0.9970 -3.6316 29 6 9.3467 -1.4033 -2.4224 30 7 4.6285 -0.3598 -1.1564 31 6 3.3155 -0.3641 -1.1495 32 1 -1.0500 0.0003 -0.0005 33 1 2.7963 0.6523 2.0528 34 1 5.2767 0.6278 1.9702 35 1 6.9142 -0.6508 -2.0612 36 1 8.7297 1.6845 -1.1681 37 1 10.3841 1.0824 -1.1903 38 1 10.5517 1.6560 -3.2544 39 1 8.9034 2.2369 -3.2371 40 1 11.3015 0.2990 -4.5354 41 1 10.3282 0.7202 -5.9698 42 1 13.5954 -2.4044 -7.0244 43 1 8.3402 -2.0230 -5.6148 44 1 9.3688 -2.9144 -4.4572 45 1 9.0423 -2.4145 -2.1523 46 1 10.4299 -1.3598 -2.5360 47 1 2.7775 -0.6474 -2.0420 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980205213.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:51 Heat of formation + Delta-G solvation = 81.914150 kcal Electronic energy + Delta-G solvation = -28868.939385 eV Core-core repulsion = 25018.723678 eV Total energy + Delta-G solvation = -3850.215707 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.08683 -40.07770 -38.68099 -35.83336 -34.86861 -33.50031 -32.67381 -32.25052 -31.43917 -30.63866 -29.49046 -26.90150 -25.52909 -24.56878 -24.06541 -22.41840 -21.76066 -20.94583 -20.24263 -19.62426 -18.43956 -17.90844 -17.40986 -16.99657 -16.12136 -15.97583 -15.84357 -15.39776 -15.26885 -14.76988 -14.47473 -14.20437 -13.98030 -13.79808 -13.61997 -13.25230 -13.03699 -12.88602 -12.56757 -12.29057 -12.14178 -12.01944 -11.81602 -11.51120 -11.41090 -11.24829 -10.92635 -10.69257 -10.55971 -10.38819 -10.32190 -10.11842 -10.02297 -9.89444 -9.65395 -9.45769 -9.32504 -9.19899 -9.00101 -8.21055 -6.99262 -6.26811 -3.21265 -0.11378 0.72312 2.10939 2.13613 2.87269 2.94213 3.48466 3.55103 3.56143 3.56596 3.70441 3.83176 4.26584 4.40049 4.58032 4.62605 4.73126 4.80911 4.83081 4.89821 5.12314 5.20430 5.21824 5.26745 5.33562 5.40214 5.47099 5.51575 5.59592 5.68036 5.73177 5.84713 5.89733 6.02673 6.11884 6.16212 6.22322 6.34697 6.39709 6.48443 6.58571 6.62207 6.65220 6.81764 6.89060 6.90353 6.93531 7.17618 7.50655 7.99404 8.04682 8.43295 9.06650 9.67215 10.40582 11.09648 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018730 B = 0.002482 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.563519 B =11278.461784 C =12006.794693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.158 4.158 3 C -0.021 4.021 4 C -0.060 4.060 5 C -0.110 4.110 6 C 0.089 3.911 7 C 0.567 3.433 8 O -0.536 6.536 9 N -0.698 5.698 10 C 0.149 3.851 11 H 0.088 0.912 12 C -0.117 4.117 13 C -0.103 4.103 14 C -0.088 4.088 15 H 0.061 0.939 16 C 0.132 3.868 17 N -0.600 5.600 18 C -0.341 4.341 19 H 0.066 0.934 20 C -0.006 4.006 21 N -0.904 5.904 22 Si 1.048 2.952 23 H -0.279 1.279 24 H -0.299 1.299 25 H -0.293 1.293 26 C 0.134 3.866 27 C -0.090 4.090 28 H 0.070 0.930 29 C -0.111 4.111 30 N -0.453 5.453 31 C 0.126 3.874 32 H 0.228 0.772 33 H 0.146 0.854 34 H 0.155 0.845 35 H 0.411 0.589 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.034 0.966 41 H 0.026 0.974 42 H 0.265 0.735 43 H 0.017 0.983 44 H 0.038 0.962 45 H 0.068 0.932 46 H 0.090 0.910 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.360 4.812 17.685 29.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.158 4.158 3 C -0.023 4.023 4 C -0.086 4.086 5 C -0.130 4.130 6 C -0.049 4.049 7 C 0.351 3.649 8 O -0.413 6.413 9 N -0.350 5.350 10 C 0.045 3.955 11 H 0.106 0.894 12 C -0.155 4.155 13 C -0.141 4.141 14 C -0.107 4.107 15 H 0.079 0.921 16 C 0.007 3.993 17 N -0.327 5.327 18 C -0.468 4.468 19 H 0.083 0.917 20 C -0.210 4.210 21 N -0.542 5.542 22 Si 0.879 3.121 23 H -0.206 1.206 24 H -0.227 1.227 25 H -0.220 1.220 26 C 0.009 3.991 27 C -0.110 4.110 28 H 0.088 0.912 29 C -0.149 4.149 30 N -0.163 5.163 31 C -0.034 4.034 32 H 0.245 0.755 33 H 0.164 0.836 34 H 0.173 0.827 35 H 0.250 0.750 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.044 0.956 42 H 0.076 0.924 43 H 0.035 0.965 44 H 0.057 0.943 45 H 0.087 0.913 46 H 0.109 0.891 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -21.937 5.968 16.481 28.080 hybrid contribution -1.393 -0.990 1.246 2.115 sum -23.330 4.978 17.727 29.720 Atomic orbital electron populations 1.24988 0.95774 0.97898 0.98190 1.19649 0.91563 1.02302 1.02330 1.17166 0.88093 1.01421 0.95648 1.21686 0.93519 0.95579 0.97774 1.22072 0.94439 0.97358 0.99159 1.21397 0.94700 0.98368 0.90464 1.17803 0.85578 0.77898 0.83606 1.90795 1.65802 1.48924 1.35766 1.46248 1.08084 1.66432 1.14249 1.20708 0.78471 0.95992 1.00291 0.89367 1.20754 1.01768 0.96470 0.96527 1.19945 1.02444 0.98410 0.93333 1.20707 0.98843 0.94853 0.96324 0.92061 1.21727 0.94859 0.87374 0.95311 1.44454 1.23836 1.06046 1.58355 1.19752 1.16354 0.94758 1.15951 0.91661 1.26040 0.94831 1.04012 0.96100 1.70921 1.10063 1.24098 1.49121 0.84042 0.76019 0.75865 0.76128 1.20575 1.22661 1.22024 1.21499 0.89967 0.95191 0.92484 1.21620 0.98247 0.95626 0.95489 0.91176 1.21743 1.02483 0.97487 0.93204 1.67606 1.08337 1.12182 1.28170 1.22981 0.88990 0.94473 0.96995 0.75533 0.83611 0.82725 0.75043 0.92139 0.91418 0.91952 0.93182 0.94755 0.95627 0.92421 0.96491 0.94335 0.91336 0.89117 0.81433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 19.25 29.55 0.57 -0.22 16 2 C -0.16 -1.15 13.28 -38.84 -0.52 -1.66 16 3 C -0.02 -0.17 5.75 -106.68 -0.61 -0.78 16 4 C -0.06 -0.44 9.89 -38.93 -0.39 -0.83 16 5 C -0.11 -0.98 9.61 -39.12 -0.38 -1.36 16 6 C 0.09 0.98 6.75 -82.97 -0.56 0.42 16 7 C 0.57 7.32 7.50 -12.26 -0.09 7.23 16 8 O -0.54 -8.12 15.97 5.33 0.09 -8.04 16 9 N -0.70 -8.62 4.89 -55.68 -0.27 -8.89 16 10 C 0.15 1.94 2.75 -68.92 -0.19 1.75 16 11 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 12 C -0.12 -1.54 5.45 -29.48 -0.16 -1.70 16 13 C -0.10 -1.48 5.41 -30.41 -0.16 -1.65 16 14 C -0.09 -1.48 2.78 -92.19 -0.26 -1.74 16 15 H 0.06 1.01 8.11 -51.93 -0.42 0.59 16 16 C 0.13 2.88 5.53 -3.41 -0.02 2.86 16 17 N -0.60 -14.63 3.05 -171.29 -0.52 -15.15 16 18 C -0.34 -9.73 10.21 -15.06 -0.15 -9.89 16 19 H 0.07 1.98 8.06 -52.49 -0.42 1.56 16 20 C -0.01 -0.18 5.29 -17.43 -0.09 -0.27 16 21 N -0.90 -28.06 13.70 55.49 0.76 -27.30 16 22 Si 1.05 26.55 26.20 -169.99 -4.45 22.10 16 23 H -0.28 -6.70 6.19 56.52 0.35 -6.35 16 24 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 C 0.13 2.68 6.74 -3.11 -0.02 2.66 16 27 C -0.09 -1.42 2.79 -90.20 -0.25 -1.67 16 28 H 0.07 0.96 6.19 -51.93 -0.32 0.63 16 29 C -0.11 -1.59 4.81 -26.90 -0.13 -1.72 16 30 N -0.45 -4.74 9.51 -9.49 -0.09 -4.83 16 31 C 0.13 1.08 10.92 -17.15 -0.19 0.89 16 32 H 0.23 0.31 7.80 -54.09 -0.42 -0.11 16 33 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.16 1.26 7.63 -52.49 -0.40 0.86 16 35 H 0.41 4.86 5.77 -40.82 -0.24 4.62 16 36 H 0.06 0.81 7.72 -51.93 -0.40 0.41 16 37 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 38 H 0.06 0.93 7.01 -51.93 -0.36 0.56 16 39 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 40 H 0.03 0.78 7.35 -51.93 -0.38 0.40 16 41 H 0.03 0.60 3.82 -51.93 -0.20 0.40 16 42 H 0.27 8.15 8.73 -40.82 -0.36 7.79 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.04 0.77 7.87 -51.93 -0.41 0.36 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 47 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 378.82 15.07 5.71 5.71 Total: -1.00 -33.61 378.82 -8.91 -42.52 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.53 Total: 1.55 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -3.60 Total: -7.67 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -0.12 Total: -56.17 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.09 Total: -8.04 kcal Atomic # 14 Polarization: 26.55 SS G_CDS: -4.45 Total: 22.10 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.61 -8.91 -42.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980205213.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.433 kcal (2) G-P(sol) polarization free energy of solvation -33.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds