Wall clock time and date at job start Tue Mar 31 2020 22:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39986 * 120.46151 * 8.01740 * 3 2 1 5 5 C 1.38221 * 118.36860 * 180.02562 * 4 3 2 6 6 C 1.39488 * 119.20776 * 0.02562 * 5 4 3 7 7 C 1.47985 * 119.57030 * 179.97438 * 6 5 4 8 8 O 1.21541 * 120.00355 * 359.97438 * 7 6 5 9 9 N 1.34787 * 120.00037 * 179.97438 * 7 6 5 10 10 C 1.46492 * 119.99806 * 179.97438 * 9 7 6 11 11 H 1.08995 * 108.97339 * 33.92273 * 10 9 7 12 12 C 1.52527 * 109.04443 * 274.99703 * 10 9 7 13 13 C 1.53819 * 111.70523 * 185.39441 * 12 10 9 14 14 C 1.51624 * 107.02027 * 57.54182 * 13 12 10 15 15 H 1.08997 * 110.50277 * 55.20404 * 14 13 12 16 16 C 1.53054 * 116.67403 * 183.74541 * 14 13 12 17 17 N 1.48656 * 103.44478 * 155.88890 * 16 14 13 18 18 C 1.36946 * 125.78739 * 155.62234 * 17 16 14 19 19 H 1.08000 * 119.99603 * 355.52586 * 18 17 16 20 20 C 1.38805 * 119.99887 * 175.52872 * 18 17 16 21 21 N 1.31617 * 120.00483 * 7.29963 * 20 18 17 22 22 Si 1.86802 * 119.99810 * 187.29888 * 20 18 17 23 23 H 1.48498 * 109.46988 * 94.98677 * 22 20 18 24 24 H 1.48500 * 109.47553 * 214.98548 * 22 20 18 25 25 H 1.48502 * 109.47146 * 334.98776 * 22 20 18 26 26 C 1.48895 * 108.52078 * 335.22562 * 17 16 14 27 27 C 1.52327 * 105.53974 * 357.42759 * 26 17 16 28 28 H 1.08996 * 109.88606 * 271.58686 * 27 26 17 29 29 C 1.51435 * 117.45192 * 145.05294 * 27 26 17 30 30 N 1.32830 * 120.85759 * 0.25272 * 6 5 4 31 31 C 1.31295 * 121.78434 * 359.47692 * 30 6 5 32 32 H 4.52931 * 13.94750 * 0.02562 * 4 2 1 33 33 H 1.08006 * 120.81828 * 0.02562 * 4 3 2 34 34 H 1.08003 * 120.39600 * 179.97438 * 5 4 3 35 35 H 0.96998 * 119.99207 * 0.02562 * 9 7 6 36 36 H 1.09005 * 109.03128 * 64.82607 * 12 10 9 37 37 H 1.08997 * 109.03986 * 305.96986 * 12 10 9 38 38 H 1.09000 * 109.94286 * 176.92041 * 13 12 10 39 39 H 1.08997 * 109.94437 * 298.16724 * 13 12 10 40 40 H 1.09006 * 110.62487 * 274.37671 * 16 14 13 41 41 H 1.08997 * 110.63140 * 37.39393 * 16 14 13 42 42 H 0.96999 * 120.00363 * 179.97438 * 21 20 18 43 43 H 1.09001 * 110.55511 * 238.32075 * 26 17 16 44 44 H 1.08998 * 110.10966 * 116.30754 * 26 17 16 45 45 H 1.08998 * 109.94348 * 61.34527 * 29 27 26 46 46 H 1.09002 * 109.94705 * 300.10815 * 29 27 26 47 47 H 1.08000 * 119.64677 * 180.24330 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3162 -1.1939 -0.1683 5 6 4.6975 -1.1434 -0.1607 6 6 5.3327 0.0862 0.0135 7 6 6.8111 0.1495 0.0235 8 8 7.4639 -0.8658 -0.1190 9 7 7.4339 1.3331 0.1907 10 6 8.8975 1.3956 0.2012 11 1 9.2891 0.6447 -0.4849 12 6 9.3985 1.0925 1.6095 13 6 10.9220 1.2721 1.7222 14 6 11.2322 2.6990 1.3138 15 1 10.6552 3.4020 1.9145 16 6 12.7102 3.0927 1.2610 17 7 12.7302 4.2336 0.3082 18 6 13.6772 5.2218 0.2618 19 1 14.4607 5.2540 1.0044 20 6 13.6299 6.1818 -0.7396 21 7 12.5995 6.2301 -1.5570 22 14 15.0289 7.4054 -0.9271 23 1 15.9914 6.9052 -1.9412 24 1 14.4850 8.7160 -1.3650 25 1 15.7225 7.5678 0.3759 26 6 11.5520 4.1165 -0.5947 27 6 10.8555 2.8233 -0.1910 28 1 11.2753 1.9863 -0.7489 29 6 9.3437 2.7898 -0.2724 30 7 4.6277 1.2002 0.1761 31 6 3.3148 1.1950 0.1698 32 1 -1.0500 -0.0009 -0.0006 33 1 2.7976 -2.1320 -0.3008 34 1 5.2780 -2.0453 -0.2873 35 1 6.9129 2.1433 0.3048 36 1 9.1420 0.0642 1.8645 37 1 8.9083 1.7648 2.3137 38 1 11.2414 1.1019 2.7504 39 1 11.4289 0.5757 1.0543 40 1 13.0591 3.4076 2.2445 41 1 13.3143 2.2673 0.8844 42 1 12.5663 6.9013 -2.2565 43 1 11.8713 4.0623 -1.6355 44 1 10.8830 4.9647 -0.4498 45 1 9.0231 2.9530 -1.3013 46 1 8.9193 3.5561 0.3762 47 1 2.7762 2.1218 0.3012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980205219.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:57 Heat of formation + Delta-G solvation = 55.907391 kcal Electronic energy + Delta-G solvation = -28156.031396 eV Core-core repulsion = 24304.687951 eV Total energy + Delta-G solvation = -3851.343445 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.84179 -40.94961 -39.82195 -37.12173 -35.48089 -35.00954 -33.42906 -33.23014 -32.35694 -31.70475 -30.14143 -27.92297 -26.98798 -25.87682 -24.68735 -23.53468 -22.63895 -21.64699 -21.37610 -20.86509 -20.11153 -19.21758 -18.72683 -17.94426 -16.92785 -16.66378 -16.55838 -16.32169 -16.14361 -15.70888 -15.69688 -15.50017 -15.06793 -15.00749 -14.74504 -14.30154 -14.03073 -13.67852 -13.56624 -13.49699 -13.42124 -13.20042 -12.84422 -12.76368 -12.62700 -12.56175 -12.14755 -11.93070 -11.91850 -11.76281 -11.70754 -11.57365 -11.35534 -11.10826 -10.93450 -10.86312 -10.67014 -10.62477 -10.13974 -9.82561 -8.87367 -7.83763 -5.16756 -0.77723 0.11459 1.37726 1.45649 1.47958 1.56560 1.70089 1.97688 2.19817 2.50639 2.89872 2.95773 3.25723 3.34670 3.56780 3.61301 3.67579 3.70633 3.75765 3.93326 3.95057 4.11585 4.14193 4.39277 4.40961 4.47365 4.54230 4.64492 4.68076 4.71912 4.76785 4.81078 4.91340 4.97888 5.04860 5.08881 5.09663 5.12982 5.17705 5.24945 5.39330 5.41761 5.45794 5.49616 5.61161 5.73252 5.81543 6.18597 6.32621 6.50355 6.67705 7.08080 7.09647 7.76841 8.45548 9.27791 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022426 B = 0.001999 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.254501 B =14004.258885 C =14843.217968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.210 4.210 3 C -0.014 4.014 4 C -0.057 4.057 5 C -0.109 4.109 6 C 0.063 3.937 7 C 0.568 3.432 8 O -0.564 6.564 9 N -0.696 5.696 10 C 0.155 3.845 11 H 0.074 0.926 12 C -0.116 4.116 13 C -0.090 4.090 14 C -0.091 4.091 15 H 0.072 0.928 16 C 0.136 3.864 17 N -0.635 5.635 18 C -0.240 4.240 19 H 0.082 0.918 20 C -0.069 4.069 21 N -0.951 5.951 22 Si 0.976 3.024 23 H -0.289 1.289 24 H -0.295 1.295 25 H -0.267 1.267 26 C 0.201 3.799 27 C -0.104 4.104 28 H 0.065 0.935 29 C -0.094 4.094 30 N -0.466 5.466 31 C 0.117 3.883 32 H 0.263 0.737 33 H 0.172 0.828 34 H 0.158 0.842 35 H 0.417 0.583 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.044 0.956 41 H 0.026 0.974 42 H 0.246 0.754 43 H 0.009 0.991 44 H 0.009 0.991 45 H 0.067 0.933 46 H 0.075 0.925 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.611 -15.775 5.581 30.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.210 4.210 3 C -0.016 4.016 4 C -0.083 4.083 5 C -0.129 4.129 6 C -0.074 4.074 7 C 0.354 3.646 8 O -0.442 6.442 9 N -0.346 5.346 10 C 0.051 3.949 11 H 0.092 0.908 12 C -0.154 4.154 13 C -0.129 4.129 14 C -0.110 4.110 15 H 0.091 0.909 16 C 0.012 3.988 17 N -0.362 5.362 18 C -0.369 4.369 19 H 0.099 0.901 20 C -0.262 4.262 21 N -0.600 5.600 22 Si 0.805 3.195 23 H -0.216 1.216 24 H -0.222 1.222 25 H -0.192 1.192 26 C 0.076 3.924 27 C -0.124 4.124 28 H 0.083 0.917 29 C -0.133 4.133 30 N -0.176 5.176 31 C -0.044 4.044 32 H 0.279 0.721 33 H 0.190 0.810 34 H 0.176 0.824 35 H 0.254 0.746 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.044 0.956 42 H 0.055 0.945 43 H 0.028 0.972 44 H 0.027 0.973 45 H 0.086 0.914 46 H 0.093 0.907 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -24.550 -15.529 5.500 29.565 hybrid contribution 0.210 0.666 -0.648 0.953 sum -24.340 -14.863 4.852 28.928 Atomic orbital electron populations 1.25897 0.96472 0.95726 0.94874 1.19821 0.91875 1.04674 1.04655 1.17325 0.88980 0.95013 1.00279 1.21970 0.92774 0.99079 0.94432 1.22168 0.95293 0.98700 0.96778 1.21144 0.93506 0.90969 1.01769 1.18108 0.86549 0.83668 0.76305 1.90775 1.66686 1.35247 1.51540 1.45938 1.07514 1.09972 1.71152 1.21007 0.78633 0.97387 0.97902 0.90762 1.21800 0.95910 1.01928 0.95788 1.21239 0.94913 0.94278 1.02430 1.21992 0.95615 0.97716 0.95666 0.90920 1.21496 0.95400 0.89300 0.92630 1.45617 1.27267 1.26240 1.37045 1.19496 1.04355 1.03690 1.09353 0.90065 1.25634 1.00528 1.01675 0.98333 1.70186 1.30527 1.37518 1.21766 0.85088 0.78688 0.77750 0.78015 1.21648 1.22165 1.19175 1.20594 0.87019 0.92630 0.92111 1.21857 0.95167 0.98078 0.97308 0.91662 1.21384 0.94332 0.95752 1.01801 1.67527 1.09264 1.29486 1.11342 1.23335 0.88453 0.98425 0.94201 0.72073 0.81016 0.82423 0.74568 0.91645 0.91048 0.89784 0.91564 0.93740 0.95579 0.94498 0.97240 0.97323 0.91432 0.90660 0.79514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 19.25 74.32 1.43 0.69 16 2 C -0.21 -2.49 13.28 30.01 0.40 -2.09 16 3 C -0.01 -0.20 5.75 -21.20 -0.12 -0.32 16 4 C -0.06 -0.76 9.89 22.69 0.22 -0.53 16 5 C -0.11 -1.89 9.61 22.57 0.22 -1.68 16 6 C 0.06 1.37 6.75 41.88 0.28 1.65 16 7 C 0.57 14.84 7.76 86.83 0.67 15.51 16 8 O -0.56 -17.68 15.94 -3.84 -0.06 -17.74 16 9 N -0.70 -16.90 5.02 -444.66 -2.23 -19.14 16 10 C 0.15 4.12 2.44 45.12 0.11 4.23 16 11 H 0.07 2.21 7.51 -2.39 -0.02 2.20 16 12 C -0.12 -2.85 5.37 30.71 0.16 -2.68 16 13 C -0.09 -2.35 5.71 30.42 0.17 -2.17 16 14 C -0.09 -3.05 2.51 -10.32 -0.03 -3.08 16 15 H 0.07 2.50 8.01 -2.39 -0.02 2.48 16 16 C 0.14 5.62 6.89 85.98 0.59 6.21 16 17 N -0.63 -33.54 3.46 -691.36 -2.40 -35.93 16 18 C -0.24 -13.83 10.29 84.03 0.86 -12.96 16 19 H 0.08 4.48 7.84 -2.91 -0.02 4.45 16 20 C -0.07 -4.03 5.48 84.86 0.46 -3.56 16 21 N -0.95 -58.54 10.41 21.65 0.23 -58.32 16 22 Si 0.98 46.87 29.56 68.60 2.03 48.89 16 23 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 24 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 C 0.20 10.11 5.11 85.69 0.44 10.55 16 27 C -0.10 -3.86 2.28 -10.63 -0.02 -3.89 16 28 H 0.06 2.42 7.92 -2.39 -0.02 2.40 16 29 C -0.09 -2.83 5.16 30.37 0.16 -2.67 16 30 N -0.47 -9.28 9.51 -183.94 -1.75 -11.03 16 31 C 0.12 1.81 10.91 85.18 0.93 2.74 16 32 H 0.26 -0.61 7.80 -4.42 -0.03 -0.64 16 33 H 0.17 1.26 8.06 -2.91 -0.02 1.23 16 34 H 0.16 2.57 7.63 -2.91 -0.02 2.55 16 35 H 0.42 9.06 7.93 -92.71 -0.73 8.32 16 36 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.07 1.75 7.98 -2.39 -0.02 1.73 16 40 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 41 H 0.03 1.06 8.14 -2.39 -0.02 1.05 16 42 H 0.25 14.71 8.31 -92.71 -0.77 13.93 16 43 H 0.01 0.54 7.31 -2.39 -0.02 0.52 16 44 H 0.01 0.48 7.63 -2.39 -0.02 0.46 16 45 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.07 2.19 8.03 -2.39 -0.02 2.17 16 47 H 0.19 1.95 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -74.53 388.54 3.01 -71.52 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.24 Total: 15.78 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 6.95 Total: 5.96 kcal Atomic # 7 Polarization: -118.26 SS G_CDS: -6.15 Total: -124.42 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.06 Total: -17.74 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.89 kcal Total: -74.53 3.01 -71.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980205219.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.431 kcal (2) G-P(sol) polarization free energy of solvation -74.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds