Wall clock time and date at job start Tue Mar 31 2020 22:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39718 * 119.59388 * 342.44130 * 3 2 1 5 5 C 1.37979 * 119.20162 * 179.76726 * 4 3 2 6 6 C 1.40233 * 118.39826 * 0.49170 * 5 4 3 7 7 C 1.47678 * 120.43932 * 179.77868 * 6 5 4 8 8 O 1.21574 * 120.00191 * 359.72395 * 7 6 5 9 9 N 1.34777 * 120.00131 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00013 * 179.72619 * 9 7 6 11 11 H 1.09000 * 109.03008 * 33.96392 * 10 9 7 12 12 C 1.52519 * 109.04660 * 274.99563 * 10 9 7 13 13 C 1.53808 * 111.71378 * 293.49584 * 12 10 9 14 14 C 1.51622 * 107.03148 * 302.46043 * 13 12 10 15 15 H 1.09005 * 110.50315 * 304.77539 * 14 13 12 16 16 C 1.53058 * 116.66820 * 176.22552 * 14 13 12 17 17 N 1.48660 * 103.44722 * 204.13160 * 16 14 13 18 18 C 1.36934 * 125.78829 * 204.35218 * 17 16 14 19 19 H 1.07998 * 120.00495 * 170.30879 * 18 17 16 20 20 C 1.38813 * 119.99823 * 350.31578 * 18 17 16 21 21 N 1.31622 * 119.99871 * 350.27495 * 20 18 17 22 22 Si 1.86797 * 120.00052 * 170.28132 * 20 18 17 23 23 H 1.48497 * 109.47177 * 94.15926 * 22 20 18 24 24 H 1.48506 * 109.47079 * 214.15725 * 22 20 18 25 25 H 1.48501 * 109.47097 * 334.15866 * 22 20 18 26 26 C 1.48248 * 108.43103 * 24.36915 * 17 16 14 27 27 C 1.52325 * 105.86096 * 3.19318 * 26 17 16 28 28 H 1.08997 * 109.87771 * 87.65842 * 27 26 17 29 29 C 1.51445 * 117.46362 * 214.64869 * 27 26 17 30 30 C 1.39660 * 119.12207 * 359.50922 * 6 5 4 31 31 N 1.31480 * 120.70661 * 0.24401 * 30 6 5 32 32 H 4.51261 * 14.17675 * 359.97438 * 4 2 1 33 33 H 1.08001 * 120.40404 * 359.97438 * 4 3 2 34 34 H 1.07998 * 120.79979 * 180.27632 * 5 4 3 35 35 H 0.96999 * 119.99468 * 359.71987 * 9 7 6 36 36 H 1.09011 * 109.02972 * 54.06696 * 12 10 9 37 37 H 1.09002 * 109.03478 * 172.91803 * 12 10 9 38 38 H 1.09000 * 109.94095 * 61.83302 * 13 12 10 39 39 H 1.08996 * 109.94761 * 182.98562 * 13 12 10 40 40 H 1.09005 * 110.62806 * 322.61592 * 16 14 13 41 41 H 1.08996 * 110.63358 * 85.63713 * 16 14 13 42 42 H 0.97002 * 119.99890 * 179.97438 * 21 20 18 43 43 H 1.08994 * 110.17453 * 244.09560 * 26 17 16 44 44 H 1.09002 * 110.23045 * 122.32089 * 26 17 16 45 45 H 1.09000 * 109.93623 * 59.42472 * 29 27 26 46 46 H 1.09001 * 109.93732 * 298.18609 * 29 27 26 47 47 H 1.07997 * 119.64652 * 180.27455 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2965 -1.1574 0.3665 5 6 4.6762 -1.1492 0.3590 6 6 5.3342 0.0332 -0.0090 7 6 6.8096 0.0936 -0.0279 8 8 7.4621 -0.8843 0.2818 9 7 7.4329 1.2345 -0.3835 10 6 8.8965 1.2962 -0.3964 11 1 9.2906 0.3241 -0.6927 12 6 9.3931 1.6279 1.0070 13 6 8.9839 3.0475 1.4347 14 6 9.5492 4.0028 0.4018 15 1 10.6252 3.8616 0.2997 16 6 9.1940 5.4824 0.5674 17 7 9.3374 6.0283 -0.8079 18 6 9.5897 7.3355 -1.1282 19 1 9.8311 7.6053 -2.1457 20 6 9.5353 8.3140 -0.1451 21 7 9.0580 8.0236 1.0467 22 14 10.1392 10.0428 -0.5135 23 1 8.9946 10.8861 -0.9425 24 1 10.7517 10.6241 0.7081 25 1 11.1513 9.9928 -1.5990 26 6 9.1606 4.9177 -1.7739 27 6 8.8238 3.6892 -0.9387 28 1 7.7476 3.6363 -0.7745 29 6 9.3454 2.3519 -1.4216 30 6 4.5757 1.1512 -0.3629 31 7 3.2619 1.1032 -0.3484 32 1 -1.0501 -0.0009 0.0008 33 1 2.7568 -2.0492 0.6491 34 1 5.2359 -2.0312 0.6333 35 1 6.9123 2.0146 -0.6309 36 1 8.9736 0.9096 1.7115 37 1 10.4802 1.5501 1.0271 38 1 7.8973 3.1292 1.4610 39 1 9.3973 3.2735 2.4176 40 1 8.1685 5.5940 0.9197 41 1 9.8905 5.9707 1.2489 42 1 9.0204 8.7072 1.7338 43 1 10.0834 4.7527 -2.3299 44 1 8.3436 5.1414 -2.4599 45 1 10.4337 2.3760 -1.4783 46 1 8.9261 2.1211 -2.4008 47 1 5.0737 2.0649 -0.6520 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980215374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:58 Heat of formation + Delta-G solvation = 81.284062 kcal Electronic energy + Delta-G solvation = -28844.799772 eV Core-core repulsion = 24994.556742 eV Total energy + Delta-G solvation = -3850.243030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.06226 -40.02000 -38.61415 -35.72687 -34.37993 -33.36349 -32.89596 -31.96094 -31.33307 -30.36990 -28.85872 -26.43675 -25.50189 -24.90788 -23.98434 -22.01708 -21.68476 -20.68711 -19.85116 -19.76644 -19.03392 -18.23237 -17.06780 -16.70236 -16.32475 -15.69177 -15.40152 -15.28490 -14.84075 -14.64833 -14.38899 -14.07295 -13.93854 -13.70672 -13.51943 -13.26553 -13.02149 -12.67886 -12.43127 -12.16030 -11.97972 -11.65620 -11.44513 -11.28354 -11.24106 -11.15931 -10.79946 -10.76297 -10.65587 -10.39296 -10.34838 -10.02347 -9.99004 -9.86365 -9.79634 -9.57708 -9.40759 -9.28033 -8.99466 -8.57489 -6.79484 -5.73087 -3.04801 -0.04318 0.80824 2.16769 2.21318 2.93247 2.97364 3.40141 3.46048 3.47297 3.47951 3.64649 4.16629 4.35959 4.47357 4.49299 4.63446 4.69585 4.79390 4.84487 4.99320 5.11475 5.28620 5.29926 5.31152 5.49817 5.59909 5.61592 5.62442 5.64631 5.70450 5.78886 5.95572 6.08786 6.10538 6.13372 6.20634 6.21626 6.33584 6.42761 6.54119 6.59885 6.65320 6.79988 6.99648 7.01014 7.32441 7.39616 7.51798 7.59180 7.79139 7.99927 8.24273 9.18806 9.81331 10.50388 11.40174 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013124 B = 0.002636 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.930497 B =10620.547514 C =12063.510812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.154 4.154 3 C 0.247 3.753 4 C -0.154 4.154 5 C -0.014 4.014 6 C -0.180 4.180 7 C 0.563 3.437 8 O -0.537 6.537 9 N -0.712 5.712 10 C 0.151 3.849 11 H 0.087 0.913 12 C -0.127 4.127 13 C -0.101 4.101 14 C -0.116 4.116 15 H 0.070 0.930 16 C 0.184 3.816 17 N -0.607 5.607 18 C -0.227 4.227 19 H 0.075 0.925 20 C -0.008 4.008 21 N -0.918 5.918 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.143 3.857 27 C -0.107 4.107 28 H 0.063 0.937 29 C -0.110 4.110 30 C 0.145 3.855 31 N -0.469 5.469 32 H 0.231 0.769 33 H 0.147 0.853 34 H 0.154 0.846 35 H 0.401 0.599 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.026 0.974 41 H 0.067 0.933 42 H 0.252 0.748 43 H 0.023 0.977 44 H 0.024 0.976 45 H 0.082 0.918 46 H 0.067 0.933 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.316 -20.294 -1.256 22.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.154 4.154 3 C 0.112 3.888 4 C -0.174 4.174 5 C -0.040 4.040 6 C -0.186 4.186 7 C 0.349 3.651 8 O -0.415 6.415 9 N -0.365 5.365 10 C 0.047 3.953 11 H 0.105 0.895 12 C -0.165 4.165 13 C -0.139 4.139 14 C -0.136 4.136 15 H 0.089 0.911 16 C 0.060 3.940 17 N -0.333 5.333 18 C -0.355 4.355 19 H 0.093 0.907 20 C -0.205 4.205 21 N -0.565 5.565 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.017 3.983 27 C -0.126 4.126 28 H 0.082 0.918 29 C -0.149 4.149 30 C -0.015 4.015 31 N -0.177 5.177 32 H 0.248 0.752 33 H 0.164 0.836 34 H 0.172 0.828 35 H 0.238 0.762 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.044 0.956 41 H 0.085 0.915 42 H 0.062 0.938 43 H 0.041 0.959 44 H 0.042 0.958 45 H 0.101 0.899 46 H 0.086 0.914 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -10.248 -20.022 -1.181 22.524 hybrid contribution 0.237 0.739 -0.025 0.777 sum -10.011 -19.283 -1.207 21.760 Atomic orbital electron populations 1.24994 0.95656 0.97780 0.96389 1.19270 0.91041 1.02210 1.02915 1.16767 0.88263 0.89572 0.94205 1.22032 0.94410 0.99142 1.01797 1.21671 0.93526 0.97535 0.91292 1.21182 0.94939 0.96478 1.05959 1.17917 0.86480 0.83332 0.77326 1.90777 1.66738 1.35580 1.48452 1.46195 1.08373 1.13755 1.68167 1.21125 0.78403 0.99891 0.95866 0.89534 1.21926 1.01203 0.97674 0.95725 1.21275 1.00483 0.93244 0.98865 1.22394 0.99135 0.98002 0.94034 0.91128 1.21104 0.99152 0.86328 0.87437 1.45100 1.84260 1.03507 1.00454 1.19017 1.39723 0.81859 0.94929 0.90738 1.24799 1.01298 0.97866 0.96524 1.69956 1.49956 1.32821 1.03782 0.86158 0.78417 0.84466 0.77046 1.21681 1.21659 1.20664 1.20980 0.97371 0.87460 0.92443 1.21776 0.99194 0.93652 0.97963 0.91835 1.21622 1.01919 0.93942 0.97378 1.23021 0.88758 0.97333 0.92405 1.67779 1.09712 1.26522 1.13715 0.75205 0.83553 0.82813 0.76180 0.91923 0.91142 0.92249 0.91861 0.95587 0.91461 0.93788 0.95908 0.95789 0.89950 0.91420 0.81656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 19.25 29.55 0.57 -0.34 16 2 C -0.15 -1.52 13.43 -38.84 -0.52 -2.04 16 3 C 0.25 2.68 6.59 -84.91 -0.56 2.12 16 4 C -0.15 -1.33 9.77 -39.12 -0.38 -1.71 16 5 C -0.01 -0.13 9.70 -38.93 -0.38 -0.51 16 6 C -0.18 -1.93 5.89 -104.76 -0.62 -2.55 16 7 C 0.56 6.85 7.72 -12.41 -0.10 6.75 16 8 O -0.54 -7.96 16.04 5.30 0.09 -7.88 16 9 N -0.71 -7.98 4.61 -54.61 -0.25 -8.23 16 10 C 0.15 1.78 2.71 -67.74 -0.18 1.59 16 11 H 0.09 1.04 7.52 -51.93 -0.39 0.65 16 12 C -0.13 -1.59 5.42 -26.56 -0.14 -1.73 16 13 C -0.10 -1.46 5.57 -27.01 -0.15 -1.61 16 14 C -0.12 -2.01 2.50 -89.90 -0.22 -2.23 16 15 H 0.07 1.24 8.01 -51.93 -0.42 0.83 16 16 C 0.18 4.28 5.05 -2.82 -0.01 4.27 16 17 N -0.61 -15.15 3.45 -170.42 -0.59 -15.74 16 18 C -0.23 -6.28 10.26 -15.06 -0.15 -6.44 16 19 H 0.07 2.01 7.85 -52.49 -0.41 1.60 16 20 C -0.01 -0.23 5.41 -17.43 -0.09 -0.33 16 21 N -0.92 -26.79 10.71 55.49 0.59 -26.20 16 22 Si 0.91 22.03 29.56 -169.99 -5.03 17.01 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.14 2.82 6.98 -3.42 -0.02 2.80 16 27 C -0.11 -1.65 2.23 -90.36 -0.20 -1.86 16 28 H 0.06 0.95 6.12 -51.93 -0.32 0.63 16 29 C -0.11 -1.34 5.37 -27.08 -0.15 -1.48 16 30 C 0.14 1.55 10.70 -17.17 -0.18 1.37 16 31 N -0.47 -5.73 10.26 -10.79 -0.11 -5.84 16 32 H 0.23 0.61 7.80 -54.09 -0.42 0.19 16 33 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.15 1.26 7.73 -52.49 -0.41 0.86 16 35 H 0.40 4.10 4.86 -40.82 -0.20 3.90 16 36 H 0.06 0.82 8.13 -51.92 -0.42 0.40 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.87 7.84 -51.93 -0.41 0.46 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.03 0.66 8.11 -51.93 -0.42 0.24 16 41 H 0.07 1.77 6.96 -51.93 -0.36 1.41 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.02 0.45 8.08 -51.93 -0.42 0.03 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.99 8.03 -51.93 -0.42 0.57 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.17 1.48 6.40 -52.49 -0.34 1.14 16 LS Contribution 382.91 15.07 5.77 5.77 Total: -1.00 -33.54 382.91 -9.63 -43.16 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.60 Total: 1.88 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -3.51 Total: -3.93 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -0.36 Total: -56.01 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.09 Total: -7.88 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.54 -9.63 -43.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980215374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.447 kcal (2) G-P(sol) polarization free energy of solvation -33.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds