Wall clock time and date at job start Tue Mar 31 2020 22:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39718 * 119.59388 * 342.44130 * 3 2 1 5 5 C 1.37979 * 119.20162 * 179.76726 * 4 3 2 6 6 C 1.40233 * 118.39826 * 0.49170 * 5 4 3 7 7 C 1.47678 * 120.43932 * 179.77868 * 6 5 4 8 8 O 1.21574 * 120.00191 * 359.72395 * 7 6 5 9 9 N 1.34777 * 120.00131 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00013 * 179.72619 * 9 7 6 11 11 H 1.09000 * 109.03008 * 33.96392 * 10 9 7 12 12 C 1.52519 * 109.04660 * 274.99563 * 10 9 7 13 13 C 1.53808 * 111.71378 * 293.49584 * 12 10 9 14 14 C 1.51622 * 107.03148 * 302.46043 * 13 12 10 15 15 H 1.09005 * 110.50315 * 304.77539 * 14 13 12 16 16 C 1.53058 * 116.66820 * 176.22552 * 14 13 12 17 17 N 1.48660 * 103.44722 * 204.13160 * 16 14 13 18 18 C 1.36934 * 125.78829 * 204.35218 * 17 16 14 19 19 H 1.07998 * 120.00495 * 170.30879 * 18 17 16 20 20 C 1.38813 * 119.99823 * 350.31578 * 18 17 16 21 21 N 1.31622 * 119.99871 * 350.27495 * 20 18 17 22 22 Si 1.86797 * 120.00052 * 170.28132 * 20 18 17 23 23 H 1.48497 * 109.47177 * 94.15926 * 22 20 18 24 24 H 1.48506 * 109.47079 * 214.15725 * 22 20 18 25 25 H 1.48501 * 109.47097 * 334.15866 * 22 20 18 26 26 C 1.48248 * 108.43103 * 24.36915 * 17 16 14 27 27 C 1.52325 * 105.86096 * 3.19318 * 26 17 16 28 28 H 1.08997 * 109.87771 * 87.65842 * 27 26 17 29 29 C 1.51445 * 117.46362 * 214.64869 * 27 26 17 30 30 C 1.39660 * 119.12207 * 359.50922 * 6 5 4 31 31 N 1.31480 * 120.70661 * 0.24401 * 30 6 5 32 32 H 4.51261 * 14.17675 * 359.97438 * 4 2 1 33 33 H 1.08001 * 120.40404 * 359.97438 * 4 3 2 34 34 H 1.07998 * 120.79979 * 180.27632 * 5 4 3 35 35 H 0.96999 * 119.99468 * 359.71987 * 9 7 6 36 36 H 1.09011 * 109.02972 * 54.06696 * 12 10 9 37 37 H 1.09002 * 109.03478 * 172.91803 * 12 10 9 38 38 H 1.09000 * 109.94095 * 61.83302 * 13 12 10 39 39 H 1.08996 * 109.94761 * 182.98562 * 13 12 10 40 40 H 1.09005 * 110.62806 * 322.61592 * 16 14 13 41 41 H 1.08996 * 110.63358 * 85.63713 * 16 14 13 42 42 H 0.97002 * 119.99890 * 179.97438 * 21 20 18 43 43 H 1.08994 * 110.17453 * 244.09560 * 26 17 16 44 44 H 1.09002 * 110.23045 * 122.32089 * 26 17 16 45 45 H 1.09000 * 109.93623 * 59.42472 * 29 27 26 46 46 H 1.09001 * 109.93732 * 298.18609 * 29 27 26 47 47 H 1.07997 * 119.64652 * 180.27455 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2965 -1.1574 0.3665 5 6 4.6762 -1.1492 0.3590 6 6 5.3342 0.0332 -0.0090 7 6 6.8096 0.0936 -0.0279 8 8 7.4621 -0.8843 0.2818 9 7 7.4329 1.2345 -0.3835 10 6 8.8965 1.2962 -0.3964 11 1 9.2906 0.3241 -0.6927 12 6 9.3931 1.6279 1.0070 13 6 8.9839 3.0475 1.4347 14 6 9.5492 4.0028 0.4018 15 1 10.6252 3.8616 0.2997 16 6 9.1940 5.4824 0.5674 17 7 9.3374 6.0283 -0.8079 18 6 9.5897 7.3355 -1.1282 19 1 9.8311 7.6053 -2.1457 20 6 9.5353 8.3140 -0.1451 21 7 9.0580 8.0236 1.0467 22 14 10.1392 10.0428 -0.5135 23 1 8.9946 10.8861 -0.9425 24 1 10.7517 10.6241 0.7081 25 1 11.1513 9.9928 -1.5990 26 6 9.1606 4.9177 -1.7739 27 6 8.8238 3.6892 -0.9387 28 1 7.7476 3.6363 -0.7745 29 6 9.3454 2.3519 -1.4216 30 6 4.5757 1.1512 -0.3629 31 7 3.2619 1.1032 -0.3484 32 1 -1.0501 -0.0009 0.0008 33 1 2.7568 -2.0492 0.6491 34 1 5.2359 -2.0312 0.6333 35 1 6.9123 2.0146 -0.6309 36 1 8.9736 0.9096 1.7115 37 1 10.4802 1.5501 1.0271 38 1 7.8973 3.1292 1.4610 39 1 9.3973 3.2735 2.4176 40 1 8.1685 5.5940 0.9197 41 1 9.8905 5.9707 1.2489 42 1 9.0204 8.7072 1.7338 43 1 10.0834 4.7527 -2.3299 44 1 8.3436 5.1414 -2.4599 45 1 10.4337 2.3760 -1.4783 46 1 8.9261 2.1211 -2.4008 47 1 5.0737 2.0649 -0.6520 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980215374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:57 Heat of formation + Delta-G solvation = 60.941580 kcal Electronic energy + Delta-G solvation = -28845.681889 eV Core-core repulsion = 24994.556742 eV Total energy + Delta-G solvation = -3851.125146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.95119 -41.06022 -39.76336 -37.13952 -35.12952 -34.71103 -33.65881 -33.53346 -32.34554 -31.53378 -30.36462 -27.90121 -26.94802 -26.06659 -24.73902 -23.54169 -22.59034 -21.92257 -21.49510 -20.43192 -20.18188 -19.11539 -18.72946 -17.89562 -16.98065 -16.83273 -16.62194 -16.35875 -16.18044 -15.70066 -15.62852 -15.39930 -15.07278 -14.80123 -14.67918 -14.28523 -14.26878 -13.89968 -13.70303 -13.47658 -13.36934 -12.95848 -12.89059 -12.65641 -12.53424 -12.40971 -12.32985 -11.95746 -11.90079 -11.88171 -11.73856 -11.41110 -11.29532 -11.10397 -11.01175 -10.83711 -10.62131 -10.60905 -10.15298 -9.88514 -8.83306 -7.86099 -5.19232 -0.79305 0.08634 1.40860 1.45739 1.46847 1.56445 1.60463 2.05797 2.16318 2.50196 2.87129 2.90613 3.32441 3.45123 3.57795 3.60228 3.63169 3.71770 3.76789 3.86078 3.93578 4.04034 4.14011 4.36269 4.45892 4.49680 4.49920 4.61101 4.65249 4.72593 4.78129 4.87219 4.90937 4.96077 5.02063 5.02928 5.08809 5.13379 5.20225 5.29649 5.37578 5.40309 5.49991 5.53183 5.57877 5.71426 5.80837 6.20659 6.41731 6.43649 6.64698 7.08259 7.08721 7.77097 8.45879 9.25891 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013124 B = 0.002636 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.930497 B =10620.547514 C =12063.510812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.218 4.218 3 C 0.234 3.766 4 C -0.146 4.146 5 C -0.013 4.013 6 C -0.192 4.192 7 C 0.568 3.432 8 O -0.565 6.565 9 N -0.708 5.708 10 C 0.156 3.844 11 H 0.094 0.906 12 C -0.118 4.118 13 C -0.094 4.094 14 C -0.104 4.104 15 H 0.072 0.928 16 C 0.191 3.809 17 N -0.631 5.631 18 C -0.239 4.239 19 H 0.078 0.922 20 C -0.067 4.067 21 N -0.948 5.948 22 Si 0.974 3.026 23 H -0.287 1.287 24 H -0.294 1.294 25 H -0.269 1.269 26 C 0.137 3.863 27 C -0.090 4.090 28 H 0.069 0.931 29 C -0.098 4.098 30 C 0.141 3.859 31 N -0.502 5.502 32 H 0.272 0.728 33 H 0.175 0.825 34 H 0.166 0.834 35 H 0.406 0.594 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.059 0.941 40 H -0.004 1.004 41 H 0.026 0.974 42 H 0.246 0.754 43 H 0.032 0.968 44 H 0.024 0.976 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.111 -22.228 -2.271 24.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.219 4.219 3 C 0.100 3.900 4 C -0.165 4.165 5 C -0.039 4.039 6 C -0.197 4.197 7 C 0.355 3.645 8 O -0.445 6.445 9 N -0.360 5.360 10 C 0.052 3.948 11 H 0.112 0.888 12 C -0.156 4.156 13 C -0.132 4.132 14 C -0.123 4.123 15 H 0.090 0.910 16 C 0.067 3.933 17 N -0.358 5.358 18 C -0.369 4.369 19 H 0.096 0.904 20 C -0.260 4.260 21 N -0.597 5.597 22 Si 0.802 3.198 23 H -0.215 1.215 24 H -0.221 1.221 25 H -0.194 1.194 26 C 0.012 3.988 27 C -0.109 4.109 28 H 0.087 0.913 29 C -0.137 4.137 30 C -0.019 4.019 31 N -0.210 5.210 32 H 0.288 0.712 33 H 0.193 0.807 34 H 0.183 0.817 35 H 0.244 0.756 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.014 0.986 41 H 0.044 0.956 42 H 0.055 0.945 43 H 0.050 0.950 44 H 0.042 0.958 45 H 0.110 0.890 46 H 0.106 0.894 47 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -11.046 -21.970 -2.230 24.692 hybrid contribution 0.350 1.350 0.269 1.420 sum -10.696 -20.620 -1.961 23.312 Atomic orbital electron populations 1.26006 0.96361 0.94886 0.93248 1.19675 0.91667 1.04955 1.05613 1.17158 0.89222 0.89821 0.93821 1.22288 0.94113 0.99479 1.00656 1.21884 0.93962 0.97451 0.90606 1.21109 0.94130 0.97184 1.07244 1.18037 0.86876 0.82961 0.76577 1.90760 1.67377 1.36484 1.49905 1.46161 1.08289 1.13789 1.67779 1.21071 0.78633 0.99985 0.95135 0.88770 1.21849 1.02021 0.95599 0.96171 1.21207 1.00149 0.93915 0.97896 1.22170 0.99551 0.94368 0.96210 0.90977 1.20856 0.96280 0.89965 0.86227 1.45456 1.84158 1.03959 1.02219 1.19401 1.38911 0.83478 0.95078 0.90445 1.25620 1.02116 1.01717 0.96539 1.70163 1.51388 1.33580 1.04564 0.85135 0.77955 0.79855 0.76812 1.21458 1.22089 1.19372 1.21185 0.97737 0.87627 0.92216 1.21681 0.99527 0.93932 0.95796 0.91257 1.21568 1.02519 0.91265 0.98299 1.23157 0.88589 0.97787 0.92344 1.67771 1.10325 1.27797 1.15147 0.71217 0.80740 0.81675 0.75607 0.92063 0.89908 0.92503 0.92211 0.98633 0.95570 0.94479 0.94962 0.95758 0.89012 0.89373 0.80755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.00 19.25 74.32 1.43 0.43 16 2 C -0.22 -4.07 13.43 30.01 0.40 -3.66 16 3 C 0.23 4.97 6.59 40.58 0.27 5.24 16 4 C -0.15 -2.34 9.77 22.57 0.22 -2.12 16 5 C -0.01 -0.23 9.70 22.69 0.22 -0.01 16 6 C -0.19 -3.96 5.89 -19.96 -0.12 -4.07 16 7 C 0.57 13.07 7.72 86.74 0.67 13.74 16 8 O -0.56 -15.92 16.04 -3.95 -0.06 -15.99 16 9 N -0.71 -14.63 4.61 -444.96 -2.05 -16.68 16 10 C 0.16 3.27 2.71 45.12 0.12 3.39 16 11 H 0.09 1.98 7.52 -2.39 -0.02 1.96 16 12 C -0.12 -2.71 5.42 30.71 0.17 -2.55 16 13 C -0.09 -2.65 5.57 30.41 0.17 -2.48 16 14 C -0.10 -3.55 2.50 -10.33 -0.03 -3.58 16 15 H 0.07 2.48 8.01 -2.38 -0.02 2.46 16 16 C 0.19 9.25 5.05 85.98 0.43 9.68 16 17 N -0.63 -32.17 3.45 -693.08 -2.39 -34.56 16 18 C -0.24 -13.50 10.26 84.03 0.86 -12.64 16 19 H 0.08 4.20 7.85 -2.91 -0.02 4.18 16 20 C -0.07 -3.83 5.41 84.86 0.46 -3.37 16 21 N -0.95 -57.57 10.71 21.65 0.23 -57.34 16 22 Si 0.97 46.16 29.56 68.60 2.03 48.19 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 24 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 26 C 0.14 5.30 6.98 85.82 0.60 5.90 16 27 C -0.09 -2.67 2.23 -10.63 -0.02 -2.70 16 28 H 0.07 1.99 6.12 -2.39 -0.01 1.97 16 29 C -0.10 -2.09 5.37 30.37 0.16 -1.93 16 30 C 0.14 3.00 10.70 85.09 0.91 3.91 16 31 N -0.50 -12.29 10.26 -188.04 -1.93 -14.22 16 32 H 0.27 0.30 7.80 -4.41 -0.03 0.26 16 33 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 34 H 0.17 2.47 7.73 -2.91 -0.02 2.45 16 35 H 0.41 7.68 4.86 -92.71 -0.45 7.23 16 36 H 0.06 1.48 8.13 -2.38 -0.02 1.46 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.06 1.64 7.84 -2.39 -0.02 1.62 16 39 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.00 -0.23 8.11 -2.38 -0.02 -0.25 16 41 H 0.03 1.45 6.96 -2.39 -0.02 1.43 16 42 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 43 H 0.03 1.20 8.08 -2.39 -0.02 1.19 16 44 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.09 1.87 8.03 -2.39 -0.02 1.85 16 46 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.18 3.10 6.40 -2.91 -0.02 3.08 16 Total: -1.00 -75.85 382.91 3.29 -72.56 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.54 Total: 14.85 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 6.93 Total: 3.18 kcal Atomic # 7 Polarization: -116.66 SS G_CDS: -6.14 Total: -122.80 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.06 Total: -15.99 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -75.85 3.29 -72.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980215374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.502 kcal (2) G-P(sol) polarization free energy of solvation -75.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds