Wall clock time and date at job start Tue Mar 31 2020 22:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.43190 * 179.97438 * 2 1 4 4 C 1.39727 * 119.58981 * 124.74396 * 3 2 1 5 5 C 1.37972 * 119.20190 * 180.25095 * 4 3 2 6 6 C 1.40236 * 118.40207 * 0.02562 * 5 4 3 7 7 C 1.47673 * 120.44377 * 180.02562 * 6 5 4 8 8 O 1.21576 * 120.00069 * 359.97273 * 7 6 5 9 9 N 1.34773 * 120.00290 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00178 * 179.97438 * 9 7 6 11 11 H 1.08992 * 109.67239 * 35.00467 * 10 9 7 12 12 C 1.53329 * 109.67688 * 274.49464 * 10 9 7 13 13 C 1.52830 * 108.09331 * 176.14676 * 12 10 9 14 14 C 1.50736 * 111.74425 * 58.91425 * 13 12 10 15 15 H 1.08999 * 109.26760 * 186.23440 * 14 13 12 16 16 C 1.53908 * 113.02316 * 65.12761 * 14 13 12 17 17 N 1.47816 * 104.06444 * 198.52238 * 16 14 13 18 18 C 1.36933 * 125.65195 * 203.39410 * 17 16 14 19 19 H 1.08000 * 119.99928 * 179.97438 * 18 17 16 20 20 C 1.38816 * 119.99885 * 359.95091 * 18 17 16 21 21 N 1.31614 * 119.99729 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99889 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46972 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47129 * 119.99722 * 22 20 18 25 25 H 1.48497 * 109.46942 * 239.99981 * 22 20 18 26 26 C 1.47171 * 108.69867 * 23.35128 * 17 16 14 27 27 C 1.53999 * 113.94746 * 308.69229 * 14 13 12 28 28 H 1.08995 * 112.20352 * 280.65625 * 27 14 13 29 29 C 1.52598 * 109.67371 * 155.50637 * 10 9 7 30 30 C 1.39656 * 119.11737 * 359.97438 * 6 5 4 31 31 N 1.31479 * 120.71385 * 359.97438 * 30 6 5 32 32 H 4.51259 * 14.17570 * 0.02562 * 4 2 1 33 33 H 1.07995 * 120.40153 * 0.24848 * 4 3 2 34 34 H 1.08001 * 120.79985 * 179.97438 * 5 4 3 35 35 H 0.97006 * 119.99692 * 0.02562 * 9 7 6 36 36 H 1.08998 * 109.74059 * 295.79170 * 12 10 9 37 37 H 1.08999 * 109.73892 * 56.50018 * 12 10 9 38 38 H 1.08996 * 109.02352 * 179.50104 * 13 12 10 39 39 H 1.09001 * 109.02512 * 298.33764 * 13 12 10 40 40 H 1.08996 * 110.51136 * 317.17041 * 16 14 13 41 41 H 1.08999 * 110.51057 * 79.87836 * 16 14 13 42 42 H 0.97007 * 119.99384 * 180.02562 * 21 20 18 43 43 H 1.09006 * 109.96510 * 241.58407 * 26 17 16 44 44 H 1.09000 * 109.96647 * 120.33990 * 26 17 16 45 45 H 1.08997 * 109.16277 * 302.48377 * 29 10 9 46 46 H 1.09000 * 109.16290 * 61.68031 * 29 10 9 47 47 H 1.08000 * 119.64303 * 180.02562 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2956 0.6934 -0.9984 5 6 4.6753 0.6844 -0.9937 6 6 5.3343 -0.0256 0.0203 7 6 6.8097 -0.0649 0.0688 8 8 7.4614 0.5203 -0.7743 9 7 7.4338 -0.7496 1.0476 10 6 8.8975 -0.7890 1.0953 11 1 9.3016 0.1642 0.7546 12 6 9.4131 -1.9192 0.1965 13 6 10.9405 -1.8666 0.1969 14 6 11.5042 -2.0177 1.5867 15 1 12.5829 -1.8641 1.5560 16 6 11.2210 -3.3987 2.2042 17 7 11.4241 -3.1926 3.6538 18 6 11.7311 -4.1688 4.5635 19 1 11.8603 -3.9149 5.6053 20 6 11.8759 -5.4850 4.1468 21 7 11.7176 -5.7946 2.8774 22 14 12.2955 -6.8168 5.3878 23 1 12.4203 -6.2129 6.7387 24 1 11.2188 -7.8393 5.3996 25 1 13.5817 -7.4565 5.0114 26 6 11.2425 -1.7639 3.9571 27 6 10.8849 -1.0585 2.6201 28 1 11.3058 -0.0552 2.5549 29 6 9.3578 -1.0608 2.5246 30 6 4.5766 -0.6942 0.9844 31 7 3.2628 -0.6615 0.9473 32 1 -1.0500 0.0000 0.0008 33 1 2.7553 1.2295 -1.7645 34 1 5.2343 1.2107 -1.7532 35 1 6.9138 -1.2169 1.7201 36 1 9.0779 -2.8807 0.5853 37 1 9.0403 -1.7815 -0.8184 38 1 11.3239 -2.6705 -0.4314 39 1 11.2632 -0.9105 -0.2153 40 1 10.1945 -3.7043 2.0020 41 1 11.9234 -4.1394 1.8217 42 1 11.8184 -6.7145 2.5864 43 1 12.1659 -1.3490 4.3614 44 1 10.4315 -1.6358 4.6740 45 1 8.9565 -0.2898 3.1824 46 1 8.9815 -2.0329 2.8430 47 1 5.0754 -1.2432 1.7694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980215376.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:00 Heat of formation + Delta-G solvation = 57.335176 kcal Electronic energy + Delta-G solvation = -28583.296490 eV Core-core repulsion = 24732.014958 eV Total energy + Delta-G solvation = -3851.281532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.86320 -41.00575 -39.87793 -36.96901 -35.24648 -34.84661 -33.66233 -33.63889 -32.31025 -31.48879 -30.27398 -27.77471 -26.85572 -26.09462 -24.74706 -23.64316 -23.02669 -22.14745 -21.29094 -20.40345 -19.85832 -18.89939 -18.65807 -17.98157 -17.06258 -16.91679 -16.54987 -16.44663 -16.19711 -15.95637 -15.66460 -15.27028 -14.99257 -14.85004 -14.70353 -14.29088 -14.05984 -13.85245 -13.71732 -13.66858 -13.38453 -13.01622 -12.81019 -12.65382 -12.53901 -12.34351 -12.15727 -12.02071 -11.92007 -11.83677 -11.61029 -11.50595 -11.14908 -11.10292 -11.03185 -10.93532 -10.66877 -10.60622 -10.15944 -9.89025 -8.81573 -7.75150 -5.17198 -0.79950 0.08261 1.40008 1.46450 1.46833 1.57055 1.60636 1.99867 2.15081 2.50824 2.86405 2.90276 3.35066 3.45291 3.58327 3.63634 3.71798 3.75702 3.83795 3.90912 4.02447 4.03409 4.19996 4.26953 4.36638 4.48612 4.53270 4.57248 4.62287 4.68687 4.73169 4.87669 4.91661 4.98519 5.01763 5.03972 5.10633 5.14722 5.27452 5.30931 5.38873 5.41253 5.50349 5.53412 5.62483 5.78566 5.91305 6.34324 6.42303 6.44001 6.63647 7.07866 7.14462 7.82906 8.47495 9.27094 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015484 B = 0.002345 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.920587 B =11935.772212 C =13011.651759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.218 4.218 3 C 0.235 3.765 4 C -0.146 4.146 5 C -0.014 4.014 6 C -0.191 4.191 7 C 0.567 3.433 8 O -0.566 6.566 9 N -0.708 5.708 10 C 0.159 3.841 11 H 0.091 0.909 12 C -0.120 4.120 13 C -0.091 4.091 14 C -0.102 4.102 15 H 0.056 0.944 16 C 0.173 3.827 17 N -0.628 5.628 18 C -0.233 4.233 19 H 0.078 0.922 20 C -0.069 4.069 21 N -0.947 5.947 22 Si 0.975 3.025 23 H -0.267 1.267 24 H -0.293 1.293 25 H -0.294 1.294 26 C 0.131 3.869 27 C -0.076 4.076 28 H 0.109 0.891 29 C -0.105 4.105 30 C 0.143 3.857 31 N -0.500 5.500 32 H 0.272 0.728 33 H 0.174 0.826 34 H 0.163 0.837 35 H 0.410 0.590 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.078 0.922 40 H -0.004 1.004 41 H 0.058 0.942 42 H 0.244 0.756 43 H 0.020 0.980 44 H 0.029 0.971 45 H 0.085 0.915 46 H 0.053 0.947 47 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.799 15.876 -8.152 25.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.219 4.219 3 C 0.101 3.899 4 C -0.166 4.166 5 C -0.040 4.040 6 C -0.197 4.197 7 C 0.354 3.646 8 O -0.446 6.446 9 N -0.358 5.358 10 C 0.054 3.946 11 H 0.109 0.891 12 C -0.158 4.158 13 C -0.129 4.129 14 C -0.122 4.122 15 H 0.075 0.925 16 C 0.048 3.952 17 N -0.354 5.354 18 C -0.363 4.363 19 H 0.096 0.904 20 C -0.261 4.261 21 N -0.598 5.598 22 Si 0.804 3.196 23 H -0.192 1.192 24 H -0.221 1.221 25 H -0.221 1.221 26 C 0.006 3.994 27 C -0.095 4.095 28 H 0.127 0.873 29 C -0.143 4.143 30 C -0.017 4.017 31 N -0.208 5.208 32 H 0.288 0.712 33 H 0.192 0.808 34 H 0.181 0.819 35 H 0.247 0.753 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.014 0.986 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.038 0.962 44 H 0.047 0.953 45 H 0.103 0.897 46 H 0.072 0.928 47 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -18.722 15.642 -8.036 25.686 hybrid contribution 0.663 -1.185 0.445 1.429 sum -18.058 14.457 -7.591 24.346 Atomic orbital electron populations 1.26003 0.96350 0.93677 0.94384 1.19652 0.91628 1.05451 1.05169 1.17145 0.89223 0.92584 0.90942 1.22278 0.94010 1.00472 0.99836 1.21879 0.94037 0.92611 0.95483 1.21071 0.93741 1.04522 1.00325 1.18112 0.87061 0.78286 0.81100 1.90769 1.67560 1.46411 1.39858 1.45963 1.07835 1.52234 1.29801 1.20861 0.78459 0.99347 0.95885 0.89097 1.21856 0.96043 0.98419 0.99502 1.20723 0.94604 1.02285 0.95285 1.21608 0.99314 0.96485 0.94791 0.92512 1.21496 0.97232 0.93808 0.82627 1.44923 1.82342 1.03092 1.05057 1.19471 1.38881 0.87732 0.90170 0.90374 1.25578 1.03108 0.99274 0.98174 1.70101 1.57707 1.17159 1.14791 0.85043 0.76817 0.79107 0.78595 1.19185 1.22057 1.22078 1.21814 0.97352 0.84194 0.96020 1.22060 0.94799 0.98742 0.93869 0.87322 1.21648 0.95330 1.02240 0.95118 1.23222 0.88531 0.93703 0.96195 1.67785 1.10194 1.18611 1.24246 0.71226 0.80823 0.81934 0.75317 0.92885 0.91927 0.92447 0.90341 0.98633 0.92379 0.94583 0.96156 0.95290 0.89667 0.92803 0.80078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 19.25 74.32 1.43 0.56 16 2 C -0.22 -3.76 13.43 30.01 0.40 -3.35 16 3 C 0.24 4.69 6.59 40.58 0.27 4.96 16 4 C -0.15 -2.26 9.77 22.57 0.22 -2.04 16 5 C -0.01 -0.25 9.70 22.69 0.22 -0.03 16 6 C -0.19 -3.88 5.89 -19.96 -0.12 -4.00 16 7 C 0.57 13.65 7.75 86.74 0.67 14.32 16 8 O -0.57 -17.06 16.08 -3.96 -0.06 -17.12 16 9 N -0.71 -15.63 5.05 -445.69 -2.25 -17.88 16 10 C 0.16 4.04 2.43 44.97 0.11 4.15 16 11 H 0.09 2.37 7.59 -2.39 -0.02 2.35 16 12 C -0.12 -3.50 5.40 30.65 0.17 -3.33 16 13 C -0.09 -2.75 5.37 29.80 0.16 -2.59 16 14 C -0.10 -3.69 2.81 -10.88 -0.03 -3.72 16 15 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 16 C 0.17 8.30 4.79 86.43 0.41 8.72 16 17 N -0.63 -31.79 3.41 -690.54 -2.35 -34.14 16 18 C -0.23 -13.05 10.28 84.03 0.86 -12.18 16 19 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 20 C -0.07 -3.92 5.49 84.86 0.47 -3.46 16 21 N -0.95 -56.64 10.11 21.65 0.22 -56.42 16 22 Si 0.98 45.97 29.55 68.60 2.03 48.00 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 26 C 0.13 5.19 6.54 87.06 0.57 5.76 16 27 C -0.08 -2.35 3.61 -9.65 -0.03 -2.38 16 28 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 29 C -0.11 -2.86 4.11 30.46 0.13 -2.74 16 30 C 0.14 2.78 10.70 85.09 0.91 3.69 16 31 N -0.50 -11.25 10.26 -188.04 -1.93 -13.18 16 32 H 0.27 -0.06 7.80 -4.42 -0.03 -0.10 16 33 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 34 H 0.16 2.52 7.73 -2.91 -0.02 2.50 16 35 H 0.41 7.31 6.65 -92.70 -0.62 6.69 16 36 H 0.05 1.77 6.80 -2.39 -0.02 1.75 16 37 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.00 -0.22 6.15 -2.39 -0.01 -0.23 16 41 H 0.06 3.29 5.96 -2.39 -0.01 3.27 16 42 H 0.24 14.24 8.31 -92.70 -0.77 13.47 16 43 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 44 H 0.03 1.12 7.74 -2.39 -0.02 1.10 16 45 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.05 1.76 7.16 -2.39 -0.02 1.74 16 47 H 0.18 2.65 6.40 -2.91 -0.02 2.63 16 Total: -1.00 -74.60 380.86 2.84 -71.75 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.38 Total: 16.64 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 6.81 Total: 2.34 kcal Atomic # 7 Polarization: -115.30 SS G_CDS: -6.31 Total: -121.61 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.06 Total: -17.12 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -74.60 2.84 -71.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980215376.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.089 kcal (2) G-P(sol) polarization free energy of solvation -74.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds