Wall clock time and date at job start Tue Mar 31 2020 22:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39725 * 119.59520 * 334.77486 * 3 2 1 5 5 C 1.37966 * 119.20157 * 179.72507 * 4 3 2 6 6 C 1.40241 * 118.40491 * 359.97438 * 5 4 3 7 7 C 1.47670 * 120.44108 * 179.97438 * 6 5 4 8 8 O 1.21574 * 120.00333 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99735 * 180.02562 * 7 6 5 10 10 C 1.46503 * 120.00229 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.02266 * 35.00491 * 10 9 7 12 12 C 1.52521 * 109.04459 * 276.05232 * 10 9 7 13 13 C 1.53812 * 111.70268 * 185.39691 * 12 10 9 14 14 C 1.51616 * 107.02094 * 57.52907 * 13 12 10 15 15 H 1.09001 * 110.50752 * 56.33149 * 14 13 12 16 16 C 1.53066 * 116.68243 * 183.73091 * 14 13 12 17 17 N 1.48658 * 103.44819 * 155.89042 * 16 14 13 18 18 C 1.36933 * 125.78441 * 155.58623 * 17 16 14 19 19 H 1.08001 * 120.00163 * 180.02562 * 18 17 16 20 20 C 1.38811 * 119.99790 * 0.02908 * 18 17 16 21 21 N 1.31616 * 120.00291 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99603 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47243 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46954 * 120.00098 * 22 20 18 25 25 H 1.48504 * 109.46812 * 239.99838 * 22 20 18 26 26 C 1.48248 * 108.43227 * 335.62627 * 17 16 14 27 27 C 1.52333 * 105.86528 * 356.81338 * 26 17 16 28 28 H 1.09000 * 109.88410 * 272.32503 * 27 26 17 29 29 C 1.51435 * 117.44578 * 145.22666 * 27 26 17 30 30 C 1.39653 * 119.11559 * 0.02562 * 6 5 4 31 31 N 1.31489 * 120.71149 * 359.97438 * 30 6 5 32 32 H 4.51267 * 14.17493 * 359.97438 * 4 2 1 33 33 H 1.08000 * 120.39525 * 359.70043 * 4 3 2 34 34 H 1.08005 * 120.79997 * 180.02562 * 5 4 3 35 35 H 0.97004 * 120.00514 * 0.02562 * 9 7 6 36 36 H 1.09002 * 109.03042 * 305.96154 * 12 10 9 37 37 H 1.08994 * 109.03624 * 64.89364 * 12 10 9 38 38 H 1.08998 * 109.94909 * 176.91085 * 13 12 10 39 39 H 1.09004 * 109.94167 * 298.15620 * 13 12 10 40 40 H 1.09000 * 110.62608 * 274.38503 * 16 14 13 41 41 H 1.09009 * 110.62209 * 37.40261 * 16 14 13 42 42 H 0.96996 * 119.99742 * 179.97438 * 21 20 18 43 43 H 1.08995 * 110.17238 * 115.90961 * 26 17 16 44 44 H 1.09001 * 110.16727 * 237.64597 * 26 17 16 45 45 H 1.09002 * 109.88123 * 61.83235 * 29 27 26 46 46 H 1.08999 * 109.99994 * 300.60019 * 29 27 26 47 47 H 1.07996 * 119.64642 * 179.97438 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2965 -1.0982 0.5178 5 6 4.6761 -1.0914 0.5085 6 6 5.3342 0.0263 -0.0248 7 6 6.8096 0.0811 -0.0567 8 8 7.4620 -0.8468 0.3808 9 7 7.4328 1.1598 -0.5708 10 6 8.8965 1.2146 -0.6019 11 1 9.2858 0.2125 -0.7821 12 6 9.4048 1.7106 0.7478 13 6 10.9288 1.9188 0.7401 14 6 11.2363 2.9049 -0.3698 15 1 10.6773 3.8294 -0.2250 16 6 12.7141 3.2060 -0.6317 17 7 12.7288 3.6599 -2.0472 18 6 13.6746 4.4683 -2.6191 19 1 13.5931 4.7415 -3.6608 20 6 14.7381 4.9366 -1.8598 21 7 14.8372 4.6041 -0.5902 22 14 16.0288 6.0389 -2.6402 23 1 15.6910 6.2619 -4.0688 24 1 16.0618 7.3423 -1.9294 25 1 17.3600 5.3880 -2.5425 26 6 11.5454 3.0899 -2.7346 27 6 10.8521 2.2057 -1.7060 28 1 11.2755 1.2017 -1.7346 29 6 9.3399 2.1391 -1.7489 30 6 4.5758 1.0872 -0.5243 31 7 3.2618 1.0441 -0.4981 32 1 -1.0500 -0.0007 0.0009 33 1 2.7567 -1.9423 0.9208 34 1 5.2359 -1.9272 0.9018 35 1 6.9123 1.9004 -0.9195 36 1 8.9180 2.6566 0.9852 37 1 9.1510 0.9783 1.5142 38 1 11.2536 2.3244 1.6983 39 1 11.4324 0.9718 0.5461 40 1 13.0676 3.9975 0.0291 41 1 13.3166 2.3057 -0.5109 42 1 15.5806 4.9310 -0.0599 43 1 10.8765 3.8883 -3.0558 44 1 11.8594 2.4951 -3.5924 45 1 9.0139 1.7284 -2.7045 46 1 8.9187 3.1345 -1.6080 47 1 5.0737 1.9523 -0.9365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980215381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:04 Heat of formation + Delta-G solvation = 80.414825 kcal Electronic energy + Delta-G solvation = -28116.940568 eV Core-core repulsion = 24266.659846 eV Total energy + Delta-G solvation = -3850.280723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.10549 -39.90415 -38.72578 -35.78742 -34.50090 -33.65143 -33.01752 -31.94413 -31.38609 -30.40300 -28.72145 -26.42240 -25.56332 -24.72051 -24.08911 -22.05706 -21.62807 -20.57364 -19.88194 -19.75079 -19.46029 -18.21401 -17.24507 -16.72444 -16.43266 -15.75127 -15.38249 -15.32090 -14.91604 -14.61150 -14.42212 -14.22192 -13.98754 -13.79028 -13.64022 -13.33941 -13.07328 -12.48743 -12.27190 -12.08032 -11.90281 -11.76684 -11.64662 -11.39235 -11.33895 -10.95246 -10.83627 -10.67649 -10.54302 -10.50471 -10.45580 -10.02407 -9.98597 -9.89312 -9.83333 -9.60821 -9.40840 -9.27946 -9.02608 -8.63751 -6.80455 -5.62384 -3.03186 -0.15843 0.68820 2.05981 2.09872 2.82869 2.85841 3.34852 3.41138 3.46578 3.49081 3.52824 4.03388 4.24140 4.36257 4.49942 4.52718 4.58794 4.75247 4.88303 4.99413 5.16562 5.18463 5.33042 5.37306 5.49737 5.52276 5.54619 5.63232 5.65790 5.67788 5.78381 5.96029 6.03801 6.14436 6.14802 6.23869 6.27494 6.38614 6.41876 6.57217 6.64356 6.69380 6.86868 6.89533 7.05270 7.22503 7.26423 7.57325 7.64762 7.88710 7.92006 8.36153 9.23125 9.84361 10.51145 11.42103 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031919 B = 0.001870 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.013611 B =14970.790505 C =15420.705573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.155 4.155 3 C 0.246 3.754 4 C -0.152 4.152 5 C -0.014 4.014 6 C -0.179 4.179 7 C 0.562 3.438 8 O -0.530 6.530 9 N -0.718 5.718 10 C 0.149 3.851 11 H 0.088 0.912 12 C -0.125 4.125 13 C -0.098 4.098 14 C -0.116 4.116 15 H 0.069 0.931 16 C 0.163 3.837 17 N -0.608 5.608 18 C -0.219 4.219 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.922 5.922 22 Si 0.912 3.088 23 H -0.281 1.281 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.145 3.855 27 C -0.104 4.104 28 H 0.071 0.929 29 C -0.106 4.106 30 C 0.142 3.858 31 N -0.472 5.472 32 H 0.232 0.768 33 H 0.147 0.853 34 H 0.155 0.845 35 H 0.398 0.602 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.104 0.896 41 H 0.013 0.987 42 H 0.251 0.749 43 H 0.022 0.978 44 H 0.024 0.976 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.242 -10.457 3.100 28.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.156 4.156 3 C 0.112 3.888 4 C -0.172 4.172 5 C -0.040 4.040 6 C -0.184 4.184 7 C 0.347 3.653 8 O -0.408 6.408 9 N -0.368 5.368 10 C 0.046 3.954 11 H 0.106 0.894 12 C -0.163 4.163 13 C -0.137 4.137 14 C -0.136 4.136 15 H 0.088 0.912 16 C 0.038 3.962 17 N -0.335 5.335 18 C -0.348 4.348 19 H 0.095 0.905 20 C -0.208 4.208 21 N -0.571 5.571 22 Si 0.743 3.257 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.019 3.981 27 C -0.123 4.123 28 H 0.089 0.911 29 C -0.145 4.145 30 C -0.018 4.018 31 N -0.180 5.180 32 H 0.248 0.752 33 H 0.165 0.835 34 H 0.173 0.827 35 H 0.234 0.766 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.122 0.878 41 H 0.031 0.969 42 H 0.061 0.939 43 H 0.040 0.960 44 H 0.042 0.958 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -25.993 -10.305 3.108 28.133 hybrid contribution 0.728 0.229 -0.277 0.812 sum -25.265 -10.076 2.831 27.347 Atomic orbital electron populations 1.25005 0.95670 0.97552 0.96481 1.19264 0.91034 1.02360 1.02899 1.16749 0.88235 0.90100 0.93738 1.22052 0.94416 0.99392 1.01348 1.21708 0.93549 0.96896 0.91824 1.21196 0.94939 0.97569 1.04716 1.17932 0.86448 0.82731 0.78156 1.90809 1.66682 1.36769 1.46511 1.46123 1.08421 1.19982 1.62286 1.21187 0.77396 1.01101 0.95764 0.89409 1.21903 0.97121 1.01058 0.96254 1.21254 0.93564 0.99525 0.99368 1.22396 1.01167 0.96924 0.93079 0.91226 1.21650 0.88541 0.99074 0.86898 1.45133 1.24814 1.56581 1.06927 1.19138 1.00584 1.20544 0.94530 0.90514 1.24770 0.98839 1.01111 0.96118 1.69824 1.31967 1.49168 1.06153 0.86022 0.81469 0.80028 0.78136 1.20587 1.21811 1.21824 1.20949 0.89536 0.93983 0.93604 1.21697 0.92835 0.99831 0.97938 0.91053 1.21542 0.96847 0.99262 0.96829 1.22971 0.88740 0.96782 0.93293 1.67755 1.09697 1.25302 1.15247 0.75186 0.83475 0.82709 0.76647 0.92101 0.91980 0.91563 0.91833 0.87828 0.96906 0.93867 0.96014 0.95798 0.91567 0.91156 0.81682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.73 19.25 29.55 0.57 -0.16 16 2 C -0.15 -1.30 13.43 -38.84 -0.52 -1.82 16 3 C 0.25 2.30 6.59 -84.91 -0.56 1.74 16 4 C -0.15 -1.14 9.77 -39.13 -0.38 -1.52 16 5 C -0.01 -0.11 9.70 -38.93 -0.38 -0.49 16 6 C -0.18 -1.67 5.89 -104.77 -0.62 -2.28 16 7 C 0.56 6.35 7.71 -12.41 -0.10 6.25 16 8 O -0.53 -7.83 16.06 5.30 0.09 -7.75 16 9 N -0.72 -7.09 5.00 -54.61 -0.27 -7.36 16 10 C 0.15 1.80 2.44 -67.74 -0.16 1.64 16 11 H 0.09 1.21 7.55 -51.93 -0.39 0.82 16 12 C -0.12 -1.62 5.36 -26.55 -0.14 -1.76 16 13 C -0.10 -1.50 5.71 -27.01 -0.15 -1.65 16 14 C -0.12 -2.10 2.47 -89.89 -0.22 -2.32 16 15 H 0.07 1.29 8.06 -51.93 -0.42 0.87 16 16 C 0.16 3.88 5.53 -2.82 -0.02 3.87 16 17 N -0.61 -15.51 3.45 -170.40 -0.59 -16.10 16 18 C -0.22 -6.14 10.30 -15.06 -0.16 -6.29 16 19 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 20 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 21 N -0.92 -26.94 10.11 55.49 0.56 -26.38 16 22 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 C 0.14 2.96 6.98 -3.42 -0.02 2.93 16 27 C -0.10 -1.72 2.30 -90.36 -0.21 -1.93 16 28 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 29 C -0.11 -1.33 5.15 -27.08 -0.14 -1.47 16 30 C 0.14 1.21 10.70 -17.17 -0.18 1.02 16 31 N -0.47 -4.80 10.26 -10.78 -0.11 -4.91 16 32 H 0.23 0.31 7.80 -54.09 -0.42 -0.11 16 33 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.16 1.17 7.73 -52.48 -0.41 0.77 16 35 H 0.40 2.83 6.65 -40.82 -0.27 2.56 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 0.99 7.99 -51.93 -0.41 0.57 16 40 H 0.10 2.81 5.93 -51.93 -0.31 2.50 16 41 H 0.01 0.33 8.14 -51.92 -0.42 -0.09 16 42 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.07 0.83 8.06 -51.93 -0.42 0.42 16 47 H 0.17 0.94 6.40 -52.49 -0.34 0.61 16 LS Contribution 385.76 15.07 5.81 5.81 Total: -1.00 -33.99 385.76 -9.75 -43.74 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -6.72 Total: 0.52 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -3.49 Total: -4.71 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.41 Total: -54.74 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.09 Total: -7.75 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.99 -9.75 -43.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980215381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.152 kcal (2) G-P(sol) polarization free energy of solvation -33.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds