Wall clock time and date at job start Tue Mar 31 2020 22:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39725 * 119.59520 * 334.77486 * 3 2 1 5 5 C 1.37966 * 119.20157 * 179.72507 * 4 3 2 6 6 C 1.40241 * 118.40491 * 359.97438 * 5 4 3 7 7 C 1.47670 * 120.44108 * 179.97438 * 6 5 4 8 8 O 1.21574 * 120.00333 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99735 * 180.02562 * 7 6 5 10 10 C 1.46503 * 120.00229 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.02266 * 35.00491 * 10 9 7 12 12 C 1.52521 * 109.04459 * 276.05232 * 10 9 7 13 13 C 1.53812 * 111.70268 * 185.39691 * 12 10 9 14 14 C 1.51616 * 107.02094 * 57.52907 * 13 12 10 15 15 H 1.09001 * 110.50752 * 56.33149 * 14 13 12 16 16 C 1.53066 * 116.68243 * 183.73091 * 14 13 12 17 17 N 1.48658 * 103.44819 * 155.89042 * 16 14 13 18 18 C 1.36933 * 125.78441 * 155.58623 * 17 16 14 19 19 H 1.08001 * 120.00163 * 180.02562 * 18 17 16 20 20 C 1.38811 * 119.99790 * 0.02908 * 18 17 16 21 21 N 1.31616 * 120.00291 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99603 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47243 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46954 * 120.00098 * 22 20 18 25 25 H 1.48504 * 109.46812 * 239.99838 * 22 20 18 26 26 C 1.48248 * 108.43227 * 335.62627 * 17 16 14 27 27 C 1.52333 * 105.86528 * 356.81338 * 26 17 16 28 28 H 1.09000 * 109.88410 * 272.32503 * 27 26 17 29 29 C 1.51435 * 117.44578 * 145.22666 * 27 26 17 30 30 C 1.39653 * 119.11559 * 0.02562 * 6 5 4 31 31 N 1.31489 * 120.71149 * 359.97438 * 30 6 5 32 32 H 4.51267 * 14.17493 * 359.97438 * 4 2 1 33 33 H 1.08000 * 120.39525 * 359.70043 * 4 3 2 34 34 H 1.08005 * 120.79997 * 180.02562 * 5 4 3 35 35 H 0.97004 * 120.00514 * 0.02562 * 9 7 6 36 36 H 1.09002 * 109.03042 * 305.96154 * 12 10 9 37 37 H 1.08994 * 109.03624 * 64.89364 * 12 10 9 38 38 H 1.08998 * 109.94909 * 176.91085 * 13 12 10 39 39 H 1.09004 * 109.94167 * 298.15620 * 13 12 10 40 40 H 1.09000 * 110.62608 * 274.38503 * 16 14 13 41 41 H 1.09009 * 110.62209 * 37.40261 * 16 14 13 42 42 H 0.96996 * 119.99742 * 179.97438 * 21 20 18 43 43 H 1.08995 * 110.17238 * 115.90961 * 26 17 16 44 44 H 1.09001 * 110.16727 * 237.64597 * 26 17 16 45 45 H 1.09002 * 109.88123 * 61.83235 * 29 27 26 46 46 H 1.08999 * 109.99994 * 300.60019 * 29 27 26 47 47 H 1.07996 * 119.64642 * 179.97438 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2965 -1.0982 0.5178 5 6 4.6761 -1.0914 0.5085 6 6 5.3342 0.0263 -0.0248 7 6 6.8096 0.0811 -0.0567 8 8 7.4620 -0.8468 0.3808 9 7 7.4328 1.1598 -0.5708 10 6 8.8965 1.2146 -0.6019 11 1 9.2858 0.2125 -0.7821 12 6 9.4048 1.7106 0.7478 13 6 10.9288 1.9188 0.7401 14 6 11.2363 2.9049 -0.3698 15 1 10.6773 3.8294 -0.2250 16 6 12.7141 3.2060 -0.6317 17 7 12.7288 3.6599 -2.0472 18 6 13.6746 4.4683 -2.6191 19 1 13.5931 4.7415 -3.6608 20 6 14.7381 4.9366 -1.8598 21 7 14.8372 4.6041 -0.5902 22 14 16.0288 6.0389 -2.6402 23 1 15.6910 6.2619 -4.0688 24 1 16.0618 7.3423 -1.9294 25 1 17.3600 5.3880 -2.5425 26 6 11.5454 3.0899 -2.7346 27 6 10.8521 2.2057 -1.7060 28 1 11.2755 1.2017 -1.7346 29 6 9.3399 2.1391 -1.7489 30 6 4.5758 1.0872 -0.5243 31 7 3.2618 1.0441 -0.4981 32 1 -1.0500 -0.0007 0.0009 33 1 2.7567 -1.9423 0.9208 34 1 5.2359 -1.9272 0.9018 35 1 6.9123 1.9004 -0.9195 36 1 8.9180 2.6566 0.9852 37 1 9.1510 0.9783 1.5142 38 1 11.2536 2.3244 1.6983 39 1 11.4324 0.9718 0.5461 40 1 13.0676 3.9975 0.0291 41 1 13.3166 2.3057 -0.5109 42 1 15.5806 4.9310 -0.0599 43 1 10.8765 3.8883 -3.0558 44 1 11.8594 2.4951 -3.5924 45 1 9.0139 1.7284 -2.7045 46 1 8.9187 3.1345 -1.6080 47 1 5.0737 1.9523 -0.9365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980215381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:04 Heat of formation + Delta-G solvation = 59.338065 kcal Electronic energy + Delta-G solvation = -28117.854525 eV Core-core repulsion = 24266.659846 eV Total energy + Delta-G solvation = -3851.194680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.85727 -40.95531 -39.87203 -37.14893 -35.26739 -34.85104 -33.65159 -33.57677 -32.32626 -31.58603 -30.25314 -27.85190 -26.97222 -25.87735 -24.71822 -23.56305 -22.59308 -21.67424 -21.36844 -20.82934 -20.39123 -19.05619 -18.74144 -17.95334 -16.96265 -16.85939 -16.62393 -16.28060 -16.10199 -15.78479 -15.61486 -15.47617 -15.08091 -14.85304 -14.80657 -14.28651 -14.09731 -13.75441 -13.57003 -13.50200 -13.44905 -13.11270 -12.91336 -12.77884 -12.61162 -12.33155 -12.11954 -11.91301 -11.90341 -11.73842 -11.69737 -11.51718 -11.34291 -11.09916 -11.05981 -10.82297 -10.71656 -10.60305 -10.17675 -9.88893 -8.86079 -7.75200 -5.18731 -0.79126 0.09496 1.40930 1.46731 1.47647 1.57952 1.61698 1.97916 2.15756 2.50564 2.87309 2.91261 3.34737 3.46410 3.56723 3.60220 3.67027 3.71225 3.74143 3.90215 4.01336 4.03466 4.12958 4.36394 4.44926 4.47447 4.51055 4.58470 4.68528 4.70410 4.73981 4.80564 4.92639 4.98038 5.02869 5.03212 5.08777 5.14526 5.22647 5.28185 5.38517 5.40989 5.46733 5.49557 5.58543 5.76923 5.85991 6.31302 6.43517 6.45362 6.64825 7.10718 7.11284 7.78534 8.45269 9.27289 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031919 B = 0.001870 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.013611 B =14970.790505 C =15420.705573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.218 4.218 3 C 0.237 3.763 4 C -0.148 4.148 5 C -0.016 4.016 6 C -0.191 4.191 7 C 0.566 3.434 8 O -0.570 6.570 9 N -0.704 5.704 10 C 0.157 3.843 11 H 0.072 0.928 12 C -0.115 4.115 13 C -0.093 4.093 14 C -0.102 4.102 15 H 0.072 0.928 16 C 0.166 3.834 17 N -0.633 5.633 18 C -0.235 4.235 19 H 0.081 0.919 20 C -0.071 4.071 21 N -0.950 5.950 22 Si 0.979 3.021 23 H -0.266 1.266 24 H -0.291 1.291 25 H -0.295 1.295 26 C 0.139 3.861 27 C -0.089 4.089 28 H 0.065 0.935 29 C -0.094 4.094 30 C 0.147 3.853 31 N -0.499 5.499 32 H 0.271 0.729 33 H 0.171 0.829 34 H 0.159 0.841 35 H 0.415 0.585 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.068 0.932 41 H -0.017 1.017 42 H 0.245 0.755 43 H 0.034 0.966 44 H 0.024 0.976 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.458 -10.390 2.351 31.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.219 4.219 3 C 0.103 3.897 4 C -0.168 4.168 5 C -0.043 4.043 6 C -0.196 4.196 7 C 0.353 3.647 8 O -0.450 6.450 9 N -0.355 5.355 10 C 0.053 3.947 11 H 0.091 0.909 12 C -0.153 4.153 13 C -0.132 4.132 14 C -0.122 4.122 15 H 0.090 0.910 16 C 0.041 3.959 17 N -0.359 5.359 18 C -0.364 4.364 19 H 0.099 0.901 20 C -0.263 4.263 21 N -0.600 5.600 22 Si 0.807 3.193 23 H -0.191 1.191 24 H -0.218 1.218 25 H -0.222 1.222 26 C 0.015 3.985 27 C -0.109 4.109 28 H 0.083 0.917 29 C -0.132 4.132 30 C -0.013 4.013 31 N -0.207 5.207 32 H 0.287 0.713 33 H 0.189 0.811 34 H 0.177 0.823 35 H 0.253 0.747 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.001 0.999 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.042 0.958 45 H 0.105 0.895 46 H 0.105 0.895 47 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -29.261 -10.226 2.327 31.083 hybrid contribution 1.631 0.182 -0.061 1.642 sum -27.630 -10.044 2.267 29.486 Atomic orbital electron populations 1.25999 0.96376 0.94710 0.93411 1.19663 0.91662 1.05025 1.05545 1.17111 0.89152 0.90237 0.93240 1.22255 0.94013 0.99719 1.00815 1.21866 0.94058 0.96831 0.91495 1.21057 0.93654 0.98591 1.06345 1.18161 0.87098 0.82211 0.77263 1.90794 1.67607 1.38223 1.48367 1.45887 1.07466 1.20310 1.61865 1.20914 0.78680 1.00096 0.95028 0.90944 1.21791 0.94980 1.01726 0.96844 1.21193 0.95572 0.98254 0.98186 1.22169 0.96783 0.97947 0.95281 0.90992 1.21407 0.92047 0.96364 0.86081 1.45486 1.25815 1.56590 1.08018 1.19524 1.01344 1.20669 0.94888 0.90145 1.25620 1.01056 1.02896 0.96719 1.70089 1.32292 1.50300 1.07345 0.84997 0.78464 0.77865 0.77945 1.19062 1.21800 1.22183 1.21145 0.88353 0.94723 0.94293 1.21584 0.95685 0.98314 0.95298 0.91702 1.21445 0.93267 1.00473 0.98030 1.23303 0.88376 0.97121 0.92485 1.67799 1.10318 1.26173 1.16430 0.71307 0.81130 0.82346 0.74690 0.90706 0.92225 0.91616 0.92501 0.91429 0.99926 0.94502 0.94789 0.95822 0.89460 0.89500 0.79259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.73 19.25 74.32 1.43 0.70 16 2 C -0.22 -3.32 13.43 30.02 0.40 -2.92 16 3 C 0.24 4.16 6.59 40.58 0.27 4.43 16 4 C -0.15 -2.04 9.77 22.56 0.22 -1.82 16 5 C -0.02 -0.26 9.70 22.69 0.22 -0.04 16 6 C -0.19 -3.31 5.89 -19.96 -0.12 -3.43 16 7 C 0.57 11.97 7.71 86.74 0.67 12.64 16 8 O -0.57 -16.48 16.06 -3.95 -0.06 -16.54 16 9 N -0.70 -12.15 5.00 -444.97 -2.22 -14.37 16 10 C 0.16 3.47 2.44 45.12 0.11 3.58 16 11 H 0.07 1.90 7.55 -2.39 -0.02 1.88 16 12 C -0.11 -2.78 5.36 30.71 0.16 -2.61 16 13 C -0.09 -2.81 5.71 30.41 0.17 -2.64 16 14 C -0.10 -3.68 2.47 -10.32 -0.03 -3.71 16 15 H 0.07 2.58 8.06 -2.39 -0.02 2.56 16 16 C 0.17 8.23 5.53 85.98 0.48 8.70 16 17 N -0.63 -32.89 3.45 -693.04 -2.39 -35.29 16 18 C -0.24 -13.36 10.30 84.03 0.87 -12.49 16 19 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 20 C -0.07 -4.07 5.49 84.86 0.47 -3.61 16 21 N -0.95 -57.59 10.11 21.65 0.22 -57.38 16 22 Si 0.98 46.28 29.55 68.60 2.03 48.31 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 25 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 26 C 0.14 5.59 6.98 85.82 0.60 6.19 16 27 C -0.09 -2.87 2.30 -10.62 -0.02 -2.89 16 28 H 0.06 2.18 7.93 -2.39 -0.02 2.16 16 29 C -0.09 -2.07 5.15 30.37 0.16 -1.91 16 30 C 0.15 2.25 10.70 85.09 0.91 3.16 16 31 N -0.50 -9.53 10.26 -188.03 -1.93 -11.46 16 32 H 0.27 -0.48 7.80 -4.42 -0.03 -0.51 16 33 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.16 2.31 7.73 -2.91 -0.02 2.29 16 35 H 0.41 4.47 6.65 -92.71 -0.62 3.86 16 36 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.06 1.78 7.99 -2.39 -0.02 1.77 16 40 H 0.07 3.85 5.93 -2.39 -0.01 3.84 16 41 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 42 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 43 H 0.03 1.30 8.08 -2.39 -0.02 1.28 16 44 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.09 1.70 8.06 -2.39 -0.02 1.69 16 47 H 0.19 1.65 6.40 -2.91 -0.02 1.63 16 Total: -1.00 -77.27 385.76 2.97 -74.30 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.37 Total: 11.10 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 6.96 Total: 1.32 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -6.33 Total: -118.49 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.06 Total: -16.54 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -77.27 2.97 -74.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980215381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.642 kcal (2) G-P(sol) polarization free energy of solvation -77.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds