Wall clock time and date at job start Tue Mar 31 2020 22:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39725 * 119.58598 * 148.35449 * 3 2 1 5 5 C 1.37979 * 119.19506 * 179.97438 * 4 3 2 6 6 C 1.40239 * 118.40500 * 359.97438 * 5 4 3 7 7 C 1.47669 * 120.44081 * 180.02562 * 6 5 4 8 8 O 1.21579 * 120.00084 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99908 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00103 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.73479 * 35.66027 * 10 9 7 12 12 C 1.53326 * 109.74013 * 275.00460 * 10 9 7 13 13 C 1.52594 * 108.40904 * 176.17869 * 12 10 9 14 14 C 1.53003 * 111.05528 * 62.35257 * 13 12 10 15 15 H 1.09003 * 112.55950 * 73.69857 * 14 13 12 16 16 C 1.55340 * 106.41899 * 197.20548 * 14 13 12 17 17 N 1.47174 * 106.96237 * 91.60456 * 16 14 13 18 18 C 1.36938 * 125.64923 * 181.00104 * 17 16 14 19 19 H 1.07998 * 120.00171 * 173.86666 * 18 17 16 20 20 C 1.38812 * 119.99870 * 353.86016 * 18 17 16 21 21 N 1.31614 * 119.99997 * 6.81943 * 20 18 17 22 22 Si 1.86798 * 119.99762 * 186.81244 * 20 18 17 23 23 H 1.48501 * 109.46981 * 94.99122 * 22 20 18 24 24 H 1.48501 * 109.46968 * 214.98558 * 22 20 18 25 25 H 1.48497 * 109.47444 * 334.99008 * 22 20 18 26 26 C 1.47822 * 108.70246 * 0.96122 * 17 16 14 27 27 C 1.53903 * 104.06200 * 23.34970 * 26 17 16 28 28 H 1.09000 * 109.20340 * 77.28837 * 27 26 17 29 29 C 1.50729 * 112.51231 * 198.79774 * 27 26 17 30 30 C 1.39655 * 119.11554 * 0.28133 * 6 5 4 31 31 N 1.31488 * 120.71394 * 359.39909 * 30 6 5 32 32 H 4.51255 * 14.17524 * 359.97438 * 4 2 1 33 33 H 1.07994 * 120.40434 * 0.02562 * 4 3 2 34 34 H 1.08003 * 120.79808 * 180.02562 * 5 4 3 35 35 H 0.97004 * 120.00155 * 0.02562 * 9 7 6 36 36 H 1.08997 * 109.67870 * 56.44361 * 12 10 9 37 37 H 1.09003 * 109.70413 * 295.92155 * 12 10 9 38 38 H 1.08996 * 109.16175 * 301.94696 * 13 12 10 39 39 H 1.09002 * 109.11727 * 182.73074 * 13 12 10 40 40 H 1.08997 * 109.96384 * 210.98100 * 16 14 13 41 41 H 1.08998 * 109.96184 * 332.22997 * 16 14 13 42 42 H 0.96999 * 120.00269 * 179.97438 * 21 20 18 43 43 H 1.09001 * 110.50811 * 264.70646 * 26 17 16 44 44 H 1.08999 * 110.51076 * 141.99292 * 26 17 16 45 45 H 1.09000 * 109.02679 * 186.05208 * 29 27 26 46 46 H 1.09001 * 109.02527 * 304.89572 * 29 27 26 47 47 H 1.07998 * 119.64430 * 179.69851 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2954 1.0354 -0.6375 5 6 4.6752 1.0282 -0.6321 6 6 5.3343 -0.0249 0.0184 7 6 6.8097 -0.0768 0.0522 8 8 7.4613 0.7974 -0.4858 9 7 7.4340 -1.0933 0.6794 10 6 8.8977 -1.1446 0.7135 11 1 9.2996 -0.1346 0.7945 12 6 9.4224 -1.8097 -0.5645 13 6 10.9475 -1.7614 -0.5416 14 6 11.5047 -2.5514 0.6443 15 1 11.4274 -3.6293 0.5021 16 6 12.9741 -2.0836 0.8320 17 7 12.9503 -0.9680 1.7916 18 6 14.0411 -0.2575 2.2166 19 1 13.9088 0.6086 2.8481 20 6 15.3168 -0.6504 1.8358 21 7 15.4726 -1.6211 0.9607 22 14 16.8123 0.1986 2.5652 23 1 17.3043 -0.5800 3.7302 24 1 17.8825 0.2838 1.5393 25 1 16.4390 1.5665 3.0061 26 6 11.5539 -0.7410 2.2201 27 6 10.8603 -2.0910 1.9651 28 1 11.1306 -2.7883 2.7581 29 6 9.3595 -1.9661 1.9027 30 6 4.5768 -1.0267 0.6291 31 7 3.2629 -0.9822 0.6081 32 1 -1.0500 -0.0011 0.0001 33 1 2.7549 1.8314 -1.1278 34 1 5.2341 1.8153 -1.1165 35 1 6.9141 -1.7910 1.1083 36 1 9.0512 -1.2721 -1.4370 37 1 9.0886 -2.8466 -0.6028 38 1 11.2714 -0.7236 -0.4641 39 1 11.3321 -2.1879 -1.4680 40 1 13.5773 -2.9011 1.2266 41 1 13.3817 -1.7461 -0.1209 42 1 16.3640 -1.8954 0.6942 43 1 11.0934 0.0442 1.6205 44 1 11.5160 -0.4861 3.2792 45 1 8.9228 -2.9621 1.8290 46 1 9.0042 -1.4905 2.8169 47 1 5.0756 -1.8442 1.1282 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980215384.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:08 Heat of formation + Delta-G solvation = 77.527616 kcal Electronic energy + Delta-G solvation = -28423.030849 eV Core-core repulsion = 24572.624927 eV Total energy + Delta-G solvation = -3850.405922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.06690 -39.92804 -38.72712 -35.67543 -34.46537 -33.50395 -32.98303 -31.78736 -31.35258 -30.53372 -28.87446 -26.31826 -25.48455 -24.58986 -24.05558 -22.19953 -21.87531 -20.94287 -19.91486 -19.82950 -18.77055 -17.69883 -17.28278 -16.73966 -16.40836 -16.00548 -15.41248 -15.30352 -14.73762 -14.69341 -14.37058 -13.94227 -13.85516 -13.67286 -13.58691 -13.51151 -13.04350 -12.55589 -12.40009 -12.07623 -11.80760 -11.67061 -11.58893 -11.37122 -11.12123 -11.00673 -10.95315 -10.66148 -10.54654 -10.46439 -10.42653 -9.96953 -9.91402 -9.88519 -9.65079 -9.53225 -9.42540 -9.36200 -9.00830 -8.53124 -6.75993 -5.67985 -2.99533 -0.12465 0.71766 2.09554 2.11573 2.88866 2.90533 3.36866 3.42800 3.48170 3.50041 3.55964 4.05881 4.27964 4.40549 4.53746 4.56581 4.62133 4.86257 4.91687 5.02035 5.21238 5.27588 5.39894 5.45345 5.55131 5.56175 5.57137 5.61106 5.72793 5.80459 5.84489 5.93624 5.99028 6.06010 6.16979 6.24338 6.35550 6.44030 6.46757 6.55780 6.65633 6.82346 6.91157 6.94520 7.04219 7.26243 7.31466 7.61400 7.67742 7.87556 7.99832 8.30263 9.26724 9.87136 10.54681 11.44090 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030686 B = 0.001984 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.252750 B =14111.740811 C =14324.014238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.154 4.154 3 C 0.245 3.755 4 C -0.151 4.151 5 C -0.014 4.014 6 C -0.177 4.177 7 C 0.560 3.440 8 O -0.526 6.526 9 N -0.717 5.717 10 C 0.144 3.856 11 H 0.097 0.903 12 C -0.124 4.124 13 C -0.104 4.104 14 C -0.113 4.113 15 H 0.073 0.927 16 C 0.182 3.818 17 N -0.606 5.606 18 C -0.226 4.226 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.920 5.920 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.138 3.862 27 C -0.092 4.092 28 H 0.073 0.927 29 C -0.108 4.108 30 C 0.141 3.859 31 N -0.472 5.472 32 H 0.231 0.769 33 H 0.147 0.853 34 H 0.156 0.844 35 H 0.396 0.604 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.041 0.959 41 H 0.045 0.955 42 H 0.251 0.749 43 H 0.020 0.980 44 H 0.036 0.964 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.921 -0.525 -2.683 28.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.154 4.154 3 C 0.110 3.890 4 C -0.171 4.171 5 C -0.040 4.040 6 C -0.182 4.182 7 C 0.346 3.654 8 O -0.403 6.403 9 N -0.367 5.367 10 C 0.041 3.959 11 H 0.114 0.886 12 C -0.162 4.162 13 C -0.142 4.142 14 C -0.132 4.132 15 H 0.092 0.908 16 C 0.058 3.942 17 N -0.332 5.332 18 C -0.355 4.355 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.012 3.988 27 C -0.112 4.112 28 H 0.091 0.909 29 C -0.147 4.147 30 C -0.019 4.019 31 N -0.180 5.180 32 H 0.248 0.752 33 H 0.165 0.835 34 H 0.173 0.827 35 H 0.231 0.769 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.038 0.962 44 H 0.055 0.945 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -27.615 -0.546 -2.679 27.750 hybrid contribution 0.927 0.637 0.194 1.142 sum -26.687 0.090 -2.485 26.803 Atomic orbital electron populations 1.24997 0.95664 0.97478 0.96721 1.19270 0.91033 1.02378 1.02762 1.16739 0.88211 0.90719 0.93305 1.22057 0.94425 0.99631 1.01021 1.21728 0.93539 0.96209 0.92521 1.21214 0.94992 0.98500 1.03522 1.17915 0.86387 0.82090 0.79016 1.90835 1.66676 1.38059 1.44708 1.46057 1.08345 1.26048 1.56276 1.20945 0.77222 1.01777 0.95993 0.88550 1.21898 0.97247 1.00053 0.97023 1.21455 0.92810 1.01750 0.98166 1.22461 0.99176 0.98280 0.93295 0.90842 1.21465 0.88580 0.90417 0.93754 1.44564 1.00980 1.37852 1.49822 1.19069 0.83952 1.06982 1.25484 0.90540 1.24805 0.97328 0.98742 0.99564 1.69968 1.21004 1.31562 1.34274 0.86142 0.82921 0.78667 0.78342 1.21710 1.21828 1.20685 1.21518 0.86501 0.93656 0.97093 1.21355 0.91776 0.99515 0.98510 0.90856 1.20956 0.97095 0.99512 0.97111 1.22952 0.88737 0.96323 0.93892 1.67747 1.09663 1.23904 1.16732 0.75207 0.83478 0.82661 0.76904 0.92075 0.92167 0.91142 0.92223 0.94058 0.93717 0.93841 0.96216 0.94547 0.91933 0.91702 0.81730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.75 19.25 29.55 0.57 -0.18 16 2 C -0.15 -1.31 13.43 -38.84 -0.52 -1.84 16 3 C 0.24 2.33 6.59 -84.91 -0.56 1.77 16 4 C -0.15 -1.19 9.77 -39.12 -0.38 -1.57 16 5 C -0.01 -0.12 9.70 -38.93 -0.38 -0.50 16 6 C -0.18 -1.72 5.89 -104.77 -0.62 -2.34 16 7 C 0.56 6.74 7.74 -12.41 -0.10 6.65 16 8 O -0.53 -8.41 16.09 5.30 0.09 -8.33 16 9 N -0.72 -7.40 5.06 -55.26 -0.28 -7.68 16 10 C 0.14 1.87 2.26 -68.40 -0.15 1.71 16 11 H 0.10 1.55 6.27 -51.93 -0.33 1.22 16 12 C -0.12 -1.68 5.53 -26.77 -0.15 -1.83 16 13 C -0.10 -1.72 4.62 -26.94 -0.12 -1.84 16 14 C -0.11 -2.01 3.61 -88.85 -0.32 -2.33 16 15 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 16 C 0.18 4.36 4.67 -2.43 -0.01 4.35 16 17 N -0.61 -15.41 3.41 -169.62 -0.58 -15.99 16 18 C -0.23 -6.38 10.27 -15.06 -0.15 -6.53 16 19 H 0.08 2.10 7.84 -52.49 -0.41 1.68 16 20 C -0.01 -0.23 5.48 -17.43 -0.10 -0.33 16 21 N -0.92 -27.22 10.37 55.49 0.58 -26.64 16 22 Si 0.91 22.37 29.56 -169.99 -5.02 17.35 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 C 0.14 2.82 6.17 -2.85 -0.02 2.80 16 27 C -0.09 -1.51 2.85 -90.76 -0.26 -1.77 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 C -0.11 -1.33 4.76 -28.51 -0.14 -1.47 16 30 C 0.14 1.21 10.70 -17.17 -0.18 1.03 16 31 N -0.47 -4.83 10.27 -10.78 -0.11 -4.94 16 32 H 0.23 0.33 7.80 -54.09 -0.42 -0.09 16 33 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.16 1.29 7.73 -52.48 -0.41 0.88 16 35 H 0.40 2.80 6.65 -40.82 -0.27 2.53 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.37 7.15 -51.93 -0.37 0.99 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.04 1.10 7.37 -51.93 -0.38 0.72 16 41 H 0.04 1.19 7.15 -51.93 -0.37 0.82 16 42 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.02 0.41 6.15 -51.93 -0.32 0.10 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.17 0.92 6.40 -52.49 -0.34 0.59 16 LS Contribution 381.40 15.07 5.75 5.75 Total: -1.00 -34.49 381.40 -9.73 -44.22 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.56 Total: 0.49 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -3.59 Total: -4.22 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.39 Total: -55.25 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.09 Total: -8.33 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.49 -9.73 -44.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980215384.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.747 kcal (2) G-P(sol) polarization free energy of solvation -34.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds