Wall clock time and date at job start Tue Mar 31 2020 22:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39725 * 119.58598 * 148.35449 * 3 2 1 5 5 C 1.37979 * 119.19506 * 179.97438 * 4 3 2 6 6 C 1.40239 * 118.40500 * 359.97438 * 5 4 3 7 7 C 1.47669 * 120.44081 * 180.02562 * 6 5 4 8 8 O 1.21579 * 120.00084 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99908 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00103 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.73479 * 35.66027 * 10 9 7 12 12 C 1.53326 * 109.74013 * 275.00460 * 10 9 7 13 13 C 1.52594 * 108.40904 * 176.17869 * 12 10 9 14 14 C 1.53003 * 111.05528 * 62.35257 * 13 12 10 15 15 H 1.09003 * 112.55950 * 73.69857 * 14 13 12 16 16 C 1.55340 * 106.41899 * 197.20548 * 14 13 12 17 17 N 1.47174 * 106.96237 * 91.60456 * 16 14 13 18 18 C 1.36938 * 125.64923 * 181.00104 * 17 16 14 19 19 H 1.07998 * 120.00171 * 173.86666 * 18 17 16 20 20 C 1.38812 * 119.99870 * 353.86016 * 18 17 16 21 21 N 1.31614 * 119.99997 * 6.81943 * 20 18 17 22 22 Si 1.86798 * 119.99762 * 186.81244 * 20 18 17 23 23 H 1.48501 * 109.46981 * 94.99122 * 22 20 18 24 24 H 1.48501 * 109.46968 * 214.98558 * 22 20 18 25 25 H 1.48497 * 109.47444 * 334.99008 * 22 20 18 26 26 C 1.47822 * 108.70246 * 0.96122 * 17 16 14 27 27 C 1.53903 * 104.06200 * 23.34970 * 26 17 16 28 28 H 1.09000 * 109.20340 * 77.28837 * 27 26 17 29 29 C 1.50729 * 112.51231 * 198.79774 * 27 26 17 30 30 C 1.39655 * 119.11554 * 0.28133 * 6 5 4 31 31 N 1.31488 * 120.71394 * 359.39909 * 30 6 5 32 32 H 4.51255 * 14.17524 * 359.97438 * 4 2 1 33 33 H 1.07994 * 120.40434 * 0.02562 * 4 3 2 34 34 H 1.08003 * 120.79808 * 180.02562 * 5 4 3 35 35 H 0.97004 * 120.00155 * 0.02562 * 9 7 6 36 36 H 1.08997 * 109.67870 * 56.44361 * 12 10 9 37 37 H 1.09003 * 109.70413 * 295.92155 * 12 10 9 38 38 H 1.08996 * 109.16175 * 301.94696 * 13 12 10 39 39 H 1.09002 * 109.11727 * 182.73074 * 13 12 10 40 40 H 1.08997 * 109.96384 * 210.98100 * 16 14 13 41 41 H 1.08998 * 109.96184 * 332.22997 * 16 14 13 42 42 H 0.96999 * 120.00269 * 179.97438 * 21 20 18 43 43 H 1.09001 * 110.50811 * 264.70646 * 26 17 16 44 44 H 1.08999 * 110.51076 * 141.99292 * 26 17 16 45 45 H 1.09000 * 109.02679 * 186.05208 * 29 27 26 46 46 H 1.09001 * 109.02527 * 304.89572 * 29 27 26 47 47 H 1.07998 * 119.64430 * 179.69851 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2954 1.0354 -0.6375 5 6 4.6752 1.0282 -0.6321 6 6 5.3343 -0.0249 0.0184 7 6 6.8097 -0.0768 0.0522 8 8 7.4613 0.7974 -0.4858 9 7 7.4340 -1.0933 0.6794 10 6 8.8977 -1.1446 0.7135 11 1 9.2996 -0.1346 0.7945 12 6 9.4224 -1.8097 -0.5645 13 6 10.9475 -1.7614 -0.5416 14 6 11.5047 -2.5514 0.6443 15 1 11.4274 -3.6293 0.5021 16 6 12.9741 -2.0836 0.8320 17 7 12.9503 -0.9680 1.7916 18 6 14.0411 -0.2575 2.2166 19 1 13.9088 0.6086 2.8481 20 6 15.3168 -0.6504 1.8358 21 7 15.4726 -1.6211 0.9607 22 14 16.8123 0.1986 2.5652 23 1 17.3043 -0.5800 3.7302 24 1 17.8825 0.2838 1.5393 25 1 16.4390 1.5665 3.0061 26 6 11.5539 -0.7410 2.2201 27 6 10.8603 -2.0910 1.9651 28 1 11.1306 -2.7883 2.7581 29 6 9.3595 -1.9661 1.9027 30 6 4.5768 -1.0267 0.6291 31 7 3.2629 -0.9822 0.6081 32 1 -1.0500 -0.0011 0.0001 33 1 2.7549 1.8314 -1.1278 34 1 5.2341 1.8153 -1.1165 35 1 6.9141 -1.7910 1.1083 36 1 9.0512 -1.2721 -1.4370 37 1 9.0886 -2.8466 -0.6028 38 1 11.2714 -0.7236 -0.4641 39 1 11.3321 -2.1879 -1.4680 40 1 13.5773 -2.9011 1.2266 41 1 13.3817 -1.7461 -0.1209 42 1 16.3640 -1.8954 0.6942 43 1 11.0934 0.0442 1.6205 44 1 11.5160 -0.4861 3.2792 45 1 8.9228 -2.9621 1.8290 46 1 9.0042 -1.4905 2.8169 47 1 5.0756 -1.8442 1.1282 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980215384.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:07 Heat of formation + Delta-G solvation = 55.168817 kcal Electronic energy + Delta-G solvation = -28424.000399 eV Core-core repulsion = 24572.624927 eV Total energy + Delta-G solvation = -3851.375472 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.87005 -41.03652 -39.88159 -37.06073 -35.23592 -34.83074 -33.65009 -33.36480 -32.46041 -31.65645 -30.42394 -27.75812 -26.93270 -25.86923 -24.71785 -23.58709 -23.07500 -22.03591 -21.56856 -20.39655 -19.90841 -19.04937 -18.44589 -18.07812 -17.14579 -16.81802 -16.76095 -16.40773 -16.15940 -15.73464 -15.51691 -15.22433 -15.07262 -14.85297 -14.79926 -14.30716 -14.04479 -14.00378 -13.73747 -13.67026 -13.20804 -13.14733 -12.86243 -12.72029 -12.47232 -12.32470 -12.18419 -12.11986 -11.90665 -11.81844 -11.74494 -11.45741 -11.17894 -11.09604 -11.04174 -10.87577 -10.67497 -10.60145 -10.16257 -9.87551 -8.85071 -7.85440 -5.18948 -0.78965 0.09241 1.41558 1.43739 1.45553 1.54500 1.62258 1.99139 2.16302 2.49171 2.87321 2.91529 3.31856 3.47808 3.59459 3.66042 3.72447 3.74791 3.78368 3.92337 4.03169 4.05148 4.17507 4.23168 4.37102 4.49740 4.54876 4.57724 4.64571 4.69339 4.75245 4.79771 4.92819 4.94147 5.02973 5.05549 5.12992 5.17656 5.26114 5.34918 5.40115 5.44156 5.46839 5.52832 5.57512 5.75982 5.82808 6.21234 6.44284 6.47503 6.64619 7.11793 7.14392 7.79651 8.45343 9.25104 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030686 B = 0.001984 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.252750 B =14111.740811 C =14324.014238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.218 4.218 3 C 0.238 3.762 4 C -0.149 4.149 5 C -0.019 4.019 6 C -0.191 4.191 7 C 0.563 3.437 8 O -0.574 6.574 9 N -0.699 5.699 10 C 0.150 3.850 11 H 0.060 0.940 12 C -0.112 4.112 13 C -0.097 4.097 14 C -0.096 4.096 15 H 0.102 0.898 16 C 0.189 3.811 17 N -0.628 5.628 18 C -0.243 4.243 19 H 0.078 0.922 20 C -0.066 4.066 21 N -0.949 5.949 22 Si 0.976 3.024 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.270 1.270 26 C 0.132 3.868 27 C -0.076 4.076 28 H 0.077 0.923 29 C -0.099 4.099 30 C 0.150 3.850 31 N -0.496 5.496 32 H 0.271 0.729 33 H 0.170 0.830 34 H 0.155 0.845 35 H 0.417 0.583 36 H 0.051 0.949 37 H 0.092 0.908 38 H 0.030 0.970 39 H 0.060 0.940 40 H 0.005 0.995 41 H 0.003 0.997 42 H 0.246 0.754 43 H 0.015 0.985 44 H 0.039 0.961 45 H 0.103 0.897 46 H 0.082 0.918 47 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.529 -1.623 -1.687 31.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.219 4.219 3 C 0.103 3.897 4 C -0.168 4.168 5 C -0.045 4.045 6 C -0.196 4.196 7 C 0.350 3.650 8 O -0.455 6.455 9 N -0.351 5.351 10 C 0.046 3.954 11 H 0.078 0.922 12 C -0.151 4.151 13 C -0.135 4.135 14 C -0.115 4.115 15 H 0.120 0.880 16 C 0.064 3.936 17 N -0.354 5.354 18 C -0.372 4.372 19 H 0.095 0.905 20 C -0.259 4.259 21 N -0.598 5.598 22 Si 0.804 3.196 23 H -0.212 1.212 24 H -0.222 1.222 25 H -0.195 1.195 26 C 0.007 3.993 27 C -0.096 4.096 28 H 0.096 0.904 29 C -0.137 4.137 30 C -0.010 4.010 31 N -0.205 5.205 32 H 0.287 0.713 33 H 0.188 0.812 34 H 0.172 0.828 35 H 0.255 0.745 36 H 0.070 0.930 37 H 0.110 0.890 38 H 0.049 0.951 39 H 0.078 0.922 40 H 0.024 0.976 41 H 0.021 0.979 42 H 0.055 0.945 43 H 0.033 0.967 44 H 0.057 0.943 45 H 0.122 0.878 46 H 0.101 0.899 47 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -31.283 -1.662 -1.649 31.370 hybrid contribution 1.928 1.046 -0.141 2.198 sum -29.355 -0.616 -1.790 29.416 Atomic orbital electron populations 1.25997 0.96361 0.94510 0.93564 1.19643 0.91622 1.05113 1.05491 1.17095 0.89168 0.90659 0.92728 1.22242 0.93899 0.99942 1.00742 1.21857 0.94150 0.96129 0.92379 1.21045 0.93473 0.99770 1.05289 1.18227 0.87193 0.81498 0.78087 1.90818 1.67816 1.39919 1.46899 1.45769 1.07232 1.26253 1.55805 1.20656 0.78654 0.99979 0.96132 0.92164 1.21790 0.94361 1.01859 0.97060 1.21309 0.95363 0.99081 0.97734 1.22377 0.94683 0.99828 0.94631 0.88017 1.21244 0.92298 0.88869 0.91167 1.44894 1.02450 1.37821 1.50271 1.19454 0.85327 1.07343 1.25122 0.90456 1.25644 1.00144 0.99915 1.00213 1.70196 1.21026 1.33075 1.35501 0.85097 0.79075 0.78115 0.77306 1.21186 1.22161 1.19499 1.21720 0.84469 0.96224 0.96865 1.21265 0.94383 0.96525 0.97411 0.90422 1.20874 0.93648 1.01839 0.97344 1.23331 0.88336 0.96384 0.92980 1.67811 1.10211 1.24683 1.17758 0.71285 0.81238 0.82759 0.74462 0.93046 0.88968 0.95076 0.92176 0.97641 0.97882 0.94463 0.96699 0.94277 0.87819 0.89950 0.78842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.72 19.25 74.32 1.43 0.71 16 2 C -0.22 -3.33 13.43 30.02 0.40 -2.93 16 3 C 0.24 4.23 6.59 40.58 0.27 4.50 16 4 C -0.15 -2.19 9.77 22.57 0.22 -1.97 16 5 C -0.02 -0.33 9.70 22.69 0.22 -0.11 16 6 C -0.19 -3.50 5.89 -19.96 -0.12 -3.62 16 7 C 0.56 13.05 7.74 86.74 0.67 13.72 16 8 O -0.57 -18.77 16.09 -3.96 -0.06 -18.83 16 9 N -0.70 -12.67 5.06 -447.02 -2.26 -14.93 16 10 C 0.15 3.62 2.26 44.69 0.10 3.72 16 11 H 0.06 1.94 6.27 -2.39 -0.01 1.93 16 12 C -0.11 -2.86 5.53 30.57 0.17 -2.69 16 13 C -0.10 -3.22 4.62 30.46 0.14 -3.08 16 14 C -0.10 -3.37 3.61 -9.65 -0.03 -3.40 16 15 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 16 C 0.19 9.48 4.67 87.05 0.41 9.88 16 17 N -0.63 -33.20 3.41 -690.54 -2.35 -35.56 16 18 C -0.24 -14.18 10.27 84.03 0.86 -13.32 16 19 H 0.08 4.35 7.84 -2.91 -0.02 4.33 16 20 C -0.07 -3.89 5.48 84.86 0.47 -3.43 16 21 N -0.95 -58.70 10.37 21.65 0.22 -58.48 16 22 Si 0.98 47.24 29.56 68.60 2.03 49.27 16 23 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 24 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 25 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 26 C 0.13 5.45 6.17 86.43 0.53 5.98 16 27 C -0.08 -2.37 2.85 -10.89 -0.03 -2.41 16 28 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 29 C -0.10 -2.08 4.76 29.44 0.14 -1.94 16 30 C 0.15 2.26 10.70 85.09 0.91 3.17 16 31 N -0.50 -9.36 10.27 -188.03 -1.93 -11.29 16 32 H 0.27 -0.49 7.80 -4.42 -0.03 -0.53 16 33 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 34 H 0.15 2.62 7.73 -2.91 -0.02 2.60 16 35 H 0.42 4.14 6.65 -92.70 -0.62 3.53 16 36 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.03 1.27 7.15 -2.39 -0.02 1.25 16 39 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 40 H 0.01 0.30 7.37 -2.39 -0.02 0.29 16 41 H 0.00 0.17 7.15 -2.39 -0.02 0.15 16 42 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 43 H 0.02 0.65 6.15 -2.39 -0.01 0.63 16 44 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.19 1.48 6.40 -2.91 -0.02 1.47 16 Total: -1.00 -81.64 381.40 2.78 -78.86 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 0.37 Total: 8.17 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 6.76 Total: 2.80 kcal Atomic # 7 Polarization: -113.95 SS G_CDS: -6.32 Total: -120.26 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.06 Total: -18.83 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -81.64 2.78 -78.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980215384.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.026 kcal (2) G-P(sol) polarization free energy of solvation -81.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds