Wall clock time and date at job start Tue Mar 31 2020 22:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39637 * 120.48945 * 128.29563 * 3 2 1 5 5 N 1.31752 * 120.88208 * 179.97438 * 4 3 2 6 6 C 1.31731 * 122.03739 * 359.64834 * 5 4 3 7 7 C 1.39597 * 120.87818 * 0.63624 * 6 5 4 8 8 C 1.47860 * 120.48962 * 179.67592 * 7 6 5 9 9 O 1.21547 * 119.99994 * 187.55451 * 8 7 6 10 10 N 1.34777 * 120.00144 * 7.55587 * 8 7 6 11 11 C 1.47619 * 125.72988 * 174.87062 * 10 8 7 12 12 C 1.55841 * 104.47342 * 204.90226 * 11 10 8 13 13 H 1.08999 * 113.42931 * 201.16529 * 12 11 10 14 14 C 1.52982 * 106.36742 * 77.05715 * 12 11 10 15 15 C 1.52627 * 110.93042 * 198.10553 * 14 12 11 16 16 C 1.53295 * 108.50389 * 62.20698 * 15 14 12 17 17 C 1.52836 * 108.25498 * 296.19090 * 16 15 14 18 18 H 1.09004 * 109.06392 * 179.61327 * 17 16 15 19 19 N 1.46496 * 109.06142 * 298.53238 * 17 16 15 20 20 C 1.36939 * 120.00262 * 275.00380 * 19 17 16 21 21 H 1.07995 * 120.00045 * 0.02562 * 20 19 17 22 22 C 1.38812 * 119.99803 * 179.97438 * 20 19 17 23 23 N 1.31615 * 120.00340 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99992 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47283 * 89.99889 * 24 22 20 26 26 H 1.48503 * 109.47068 * 210.00252 * 24 22 20 27 27 H 1.48506 * 109.46755 * 329.99719 * 24 22 20 28 28 C 1.50975 * 111.52008 * 59.02888 * 17 16 15 29 29 H 1.09001 * 108.30609 * 186.71984 * 28 17 16 30 30 C 1.47436 * 125.72535 * 354.91085 * 10 8 7 31 31 C 1.39670 * 120.49166 * 308.26419 * 3 2 1 32 32 H 4.52735 * 13.92815 * 0.02562 * 4 2 1 33 33 H 1.08006 * 119.55636 * 359.96851 * 4 3 2 34 34 H 1.08001 * 119.55732 * 180.31908 * 6 5 4 35 35 H 1.09008 * 110.43060 * 86.15412 * 11 10 8 36 36 H 1.08994 * 110.43532 * 323.65330 * 11 10 8 37 37 H 1.09001 * 109.18388 * 77.73496 * 14 12 11 38 38 H 1.08998 * 109.18807 * 318.47882 * 14 12 11 39 39 H 1.09003 * 109.62835 * 302.50335 * 15 14 12 40 40 H 1.08995 * 109.62930 * 181.91456 * 15 14 12 41 41 H 1.09005 * 109.71254 * 55.89289 * 16 15 14 42 42 H 1.08998 * 109.71612 * 176.48246 * 16 15 14 43 43 H 0.97000 * 119.99748 * 94.99937 * 19 17 16 44 44 H 0.97007 * 120.00651 * 180.02562 * 23 22 20 45 45 H 1.08997 * 110.04436 * 60.03090 * 30 10 8 46 46 H 1.08997 * 110.04456 * 298.56302 * 30 10 8 47 47 H 1.08007 * 120.91792 * 0.04464 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3142 0.7467 -0.9444 5 7 4.6316 0.7532 -0.9511 6 6 5.3384 0.0703 -0.0740 7 6 4.7117 -0.7073 0.9014 8 6 5.5135 -1.4761 1.8773 9 8 4.9670 -2.2556 2.6330 10 7 6.8503 -1.3125 1.9290 11 6 7.7568 -1.9297 2.9172 12 6 8.9875 -0.9749 2.9664 13 1 9.8890 -1.4495 3.3539 14 6 8.5611 0.2356 3.7990 15 6 9.4929 1.4198 3.5563 16 6 9.3958 1.8206 2.0799 17 6 9.9088 0.6563 1.2330 18 1 9.8391 0.9250 0.1789 19 7 11.3121 0.4026 1.5684 20 6 12.3035 1.1206 0.9546 21 1 12.0509 1.8743 0.2235 22 6 13.6331 0.8805 1.2729 23 7 13.9409 -0.0370 2.1650 24 14 14.9855 1.8604 0.4361 25 1 15.2747 3.0821 1.2292 26 1 16.2127 1.0296 0.3415 27 1 14.5441 2.2485 -0.9277 28 6 9.1087 -0.6005 1.4769 29 1 9.5889 -1.4209 0.9435 30 6 7.6527 -0.4864 1.0085 31 6 3.3150 -0.7444 0.9450 32 1 -1.0500 0.0000 0.0008 33 1 2.7746 1.3259 -1.6791 34 1 6.4170 0.1085 -0.1131 35 1 8.0591 -2.9237 2.5875 36 1 7.2761 -1.9816 3.8941 37 1 8.5867 -0.0297 4.8559 38 1 7.5443 0.5180 3.5259 39 1 10.5179 1.1333 3.7914 40 1 9.1907 2.2581 4.1840 41 1 8.3576 2.0322 1.8238 42 1 10.0067 2.7048 1.8980 43 1 11.5390 -0.2741 2.2254 44 1 14.8701 -0.2046 2.3877 45 1 7.3250 0.5521 1.0564 46 1 7.5573 -0.8621 -0.0103 47 1 2.7984 -1.3325 1.6892 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992793381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:39 Heat of formation + Delta-G solvation = 89.962284 kcal Electronic energy + Delta-G solvation = -29382.575211 eV Core-core repulsion = 25532.708497 eV Total energy + Delta-G solvation = -3849.866714 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.30996 -40.09491 -38.52406 -35.74692 -34.73736 -33.55003 -32.72204 -31.71973 -31.19289 -30.29580 -29.39831 -26.75306 -25.76856 -24.40244 -23.99792 -22.94040 -21.94106 -21.15588 -20.48843 -19.14596 -18.30555 -17.49955 -17.27879 -16.96974 -16.43456 -16.22826 -15.64610 -15.06856 -14.82917 -14.55433 -14.40039 -14.02766 -13.86438 -13.67113 -13.54287 -13.41066 -13.30983 -12.90266 -12.48412 -12.40198 -12.03206 -11.67013 -11.65181 -11.38733 -11.28056 -11.17729 -10.94942 -10.87713 -10.82886 -10.41562 -10.18292 -10.14570 -10.12108 -9.80305 -9.71550 -9.61118 -9.52752 -9.18728 -8.90207 -8.74337 -7.00366 -5.80819 -3.09230 0.16790 0.58155 2.25017 2.39308 2.74267 2.88115 3.41050 3.46948 3.48066 3.61914 3.72090 3.99863 4.21088 4.39791 4.46795 4.49718 4.63102 4.67151 4.87415 4.89917 5.05848 5.14174 5.28674 5.32943 5.47120 5.52454 5.54252 5.58957 5.63558 5.65127 5.69860 5.76378 5.87066 5.90033 6.02903 6.07072 6.11186 6.17240 6.18889 6.33779 6.41649 6.46810 6.74993 6.79255 6.96890 7.04903 7.05529 7.31520 7.47188 7.67292 7.92512 8.37569 9.49591 10.05514 10.40543 11.41593 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019009 B = 0.002670 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.605822 B =10484.730580 C =11312.665592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.151 4.151 3 C -0.052 4.052 4 C 0.145 3.855 5 N -0.479 5.479 6 C 0.107 3.893 7 C -0.180 4.180 8 C 0.578 3.422 9 O -0.539 6.539 10 N -0.604 5.604 11 C 0.108 3.892 12 C -0.087 4.087 13 H 0.106 0.894 14 C -0.108 4.108 15 C -0.113 4.113 16 C -0.135 4.135 17 C 0.187 3.813 18 H 0.050 0.950 19 N -0.718 5.718 20 C -0.237 4.237 21 H 0.070 0.930 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.904 3.096 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.282 1.282 28 C -0.097 4.097 29 H 0.084 0.916 30 C 0.089 3.911 31 C 0.004 3.996 32 H 0.227 0.773 33 H 0.165 0.835 34 H 0.198 0.802 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.080 0.920 40 H 0.046 0.954 41 H 0.042 0.958 42 H 0.064 0.936 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.085 0.915 46 H 0.081 0.919 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.281 -0.564 -2.241 22.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.151 4.151 3 C -0.054 4.054 4 C -0.013 4.013 5 N -0.186 5.186 6 C -0.049 4.049 7 C -0.185 4.185 8 C 0.367 3.633 9 O -0.417 6.417 10 N -0.337 5.337 11 C -0.014 4.014 12 C -0.106 4.106 13 H 0.125 0.875 14 C -0.146 4.146 15 C -0.150 4.150 16 C -0.175 4.175 17 C 0.077 3.923 18 H 0.068 0.932 19 N -0.360 5.360 20 C -0.368 4.368 21 H 0.088 0.912 22 C -0.208 4.208 23 N -0.580 5.580 24 Si 0.736 3.264 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.208 1.208 28 C -0.117 4.117 29 H 0.103 0.897 30 C -0.033 4.033 31 C -0.022 4.022 32 H 0.244 0.756 33 H 0.182 0.818 34 H 0.213 0.787 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.083 0.917 43 H 0.218 0.782 44 H 0.065 0.935 45 H 0.102 0.898 46 H 0.099 0.901 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -22.059 -0.413 -2.589 22.214 hybrid contribution 0.203 -0.130 0.387 0.456 sum -21.856 -0.543 -2.202 21.973 Atomic orbital electron populations 1.24924 0.95710 0.98591 0.98460 1.19587 0.91449 1.02004 1.02101 1.16838 0.88166 1.01496 0.98870 1.23241 0.90023 0.93304 0.94769 1.67894 1.07323 1.19671 1.23682 1.24955 1.03285 0.88679 0.88026 1.20871 0.94486 1.02910 1.00242 1.17557 0.80529 0.82049 0.83198 1.90781 1.70583 1.37178 1.43170 1.48444 1.05226 1.48030 1.31986 1.22664 0.89805 0.96529 0.92361 1.22379 0.96897 0.95752 0.95581 0.87544 1.21475 0.99124 0.95206 0.98758 1.21392 1.00836 0.96177 0.96610 1.22202 0.98703 1.00476 0.96127 1.19595 0.85595 0.90265 0.96852 0.93204 1.42369 0.98660 1.45360 1.49586 1.19215 0.86182 1.14075 1.17347 0.91179 1.24706 0.97159 0.99314 0.99630 1.69644 1.17447 1.35206 1.35747 0.86234 0.82024 0.79233 0.78948 1.21818 1.21882 1.20791 1.21754 0.92608 1.01363 0.95941 0.89738 1.22569 0.92178 0.95548 0.93005 1.21771 0.92327 0.92980 0.95138 0.75592 0.81792 0.78664 0.91120 0.90206 0.92604 0.92787 0.90158 0.93491 0.93980 0.91750 0.78163 0.93540 0.89754 0.90120 0.83198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 19.25 29.55 0.57 -0.53 16 2 C -0.15 -1.38 13.27 -38.84 -0.52 -1.90 16 3 C -0.05 -0.52 5.73 -106.91 -0.61 -1.14 16 4 C 0.14 1.41 10.91 -17.06 -0.19 1.22 16 5 N -0.48 -5.41 10.33 -12.59 -0.13 -5.54 16 6 C 0.11 1.19 9.81 -17.09 -0.17 1.02 16 7 C -0.18 -2.15 5.88 -104.87 -0.62 -2.77 16 8 C 0.58 7.93 7.82 -12.32 -0.10 7.83 16 9 O -0.54 -8.89 16.74 5.32 0.09 -8.81 16 10 N -0.60 -7.56 2.86 -173.81 -0.50 -8.06 16 11 C 0.11 1.35 6.16 -1.91 -0.01 1.34 16 12 C -0.09 -1.16 3.35 -88.56 -0.30 -1.46 16 13 H 0.11 1.51 7.92 -51.93 -0.41 1.10 16 14 C -0.11 -1.45 4.81 -26.93 -0.13 -1.58 16 15 C -0.11 -1.75 5.84 -26.77 -0.16 -1.91 16 16 C -0.13 -2.14 5.48 -26.66 -0.15 -2.29 16 17 C 0.19 3.18 2.51 -69.03 -0.17 3.01 16 18 H 0.05 0.87 8.06 -51.93 -0.42 0.45 16 19 N -0.72 -15.92 4.18 -54.50 -0.23 -16.15 16 20 C -0.24 -6.08 9.91 -15.06 -0.15 -6.23 16 21 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 23 N -0.93 -26.69 13.06 55.49 0.72 -25.96 16 24 Si 0.90 21.57 29.55 -169.99 -5.02 16.55 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 C -0.10 -1.34 2.21 -90.89 -0.20 -1.54 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 C 0.09 1.03 3.86 -3.34 -0.01 1.01 16 31 C 0.00 0.04 9.43 -38.47 -0.36 -0.32 16 32 H 0.23 0.64 7.80 -54.09 -0.42 0.21 16 33 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 34 H 0.20 1.97 2.77 -55.98 -0.16 1.82 16 35 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 36 H 0.08 1.01 7.93 -51.93 -0.41 0.60 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.72 7.17 -51.93 -0.37 0.35 16 39 H 0.08 1.50 7.38 -51.93 -0.38 1.11 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.04 0.58 6.75 -51.93 -0.35 0.23 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.38 9.09 7.20 -40.82 -0.29 8.80 16 44 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.08 0.93 5.07 -51.93 -0.26 0.66 16 46 H 0.08 0.81 6.82 -51.93 -0.35 0.46 16 47 H 0.15 1.63 7.75 -52.48 -0.41 1.22 16 LS Contribution 377.30 15.07 5.69 5.69 Total: -1.00 -30.87 377.30 -9.07 -39.94 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -6.32 Total: 8.99 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -3.36 Total: -6.64 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.13 Total: -55.72 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.81 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.87 -9.07 -39.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992793381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.903 kcal (2) G-P(sol) polarization free energy of solvation -30.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds