Wall clock time and date at job start Tue Mar 31 2020 22:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39637 * 120.48945 * 128.29563 * 3 2 1 5 5 N 1.31752 * 120.88208 * 179.97438 * 4 3 2 6 6 C 1.31731 * 122.03739 * 359.64834 * 5 4 3 7 7 C 1.39597 * 120.87818 * 0.63624 * 6 5 4 8 8 C 1.47860 * 120.48962 * 179.67592 * 7 6 5 9 9 O 1.21547 * 119.99994 * 187.55451 * 8 7 6 10 10 N 1.34777 * 120.00144 * 7.55587 * 8 7 6 11 11 C 1.47619 * 125.72988 * 174.87062 * 10 8 7 12 12 C 1.55841 * 104.47342 * 204.90226 * 11 10 8 13 13 H 1.08999 * 113.42931 * 201.16529 * 12 11 10 14 14 C 1.52982 * 106.36742 * 77.05715 * 12 11 10 15 15 C 1.52627 * 110.93042 * 198.10553 * 14 12 11 16 16 C 1.53295 * 108.50389 * 62.20698 * 15 14 12 17 17 C 1.52836 * 108.25498 * 296.19090 * 16 15 14 18 18 H 1.09004 * 109.06392 * 179.61327 * 17 16 15 19 19 N 1.46496 * 109.06142 * 298.53238 * 17 16 15 20 20 C 1.36939 * 120.00262 * 275.00380 * 19 17 16 21 21 H 1.07995 * 120.00045 * 0.02562 * 20 19 17 22 22 C 1.38812 * 119.99803 * 179.97438 * 20 19 17 23 23 N 1.31615 * 120.00340 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99992 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47283 * 89.99889 * 24 22 20 26 26 H 1.48503 * 109.47068 * 210.00252 * 24 22 20 27 27 H 1.48506 * 109.46755 * 329.99719 * 24 22 20 28 28 C 1.50975 * 111.52008 * 59.02888 * 17 16 15 29 29 H 1.09001 * 108.30609 * 186.71984 * 28 17 16 30 30 C 1.47436 * 125.72535 * 354.91085 * 10 8 7 31 31 C 1.39670 * 120.49166 * 308.26419 * 3 2 1 32 32 H 4.52735 * 13.92815 * 0.02562 * 4 2 1 33 33 H 1.08006 * 119.55636 * 359.96851 * 4 3 2 34 34 H 1.08001 * 119.55732 * 180.31908 * 6 5 4 35 35 H 1.09008 * 110.43060 * 86.15412 * 11 10 8 36 36 H 1.08994 * 110.43532 * 323.65330 * 11 10 8 37 37 H 1.09001 * 109.18388 * 77.73496 * 14 12 11 38 38 H 1.08998 * 109.18807 * 318.47882 * 14 12 11 39 39 H 1.09003 * 109.62835 * 302.50335 * 15 14 12 40 40 H 1.08995 * 109.62930 * 181.91456 * 15 14 12 41 41 H 1.09005 * 109.71254 * 55.89289 * 16 15 14 42 42 H 1.08998 * 109.71612 * 176.48246 * 16 15 14 43 43 H 0.97000 * 119.99748 * 94.99937 * 19 17 16 44 44 H 0.97007 * 120.00651 * 180.02562 * 23 22 20 45 45 H 1.08997 * 110.04436 * 60.03090 * 30 10 8 46 46 H 1.08997 * 110.04456 * 298.56302 * 30 10 8 47 47 H 1.08007 * 120.91792 * 0.04464 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3142 0.7467 -0.9444 5 7 4.6316 0.7532 -0.9511 6 6 5.3384 0.0703 -0.0740 7 6 4.7117 -0.7073 0.9014 8 6 5.5135 -1.4761 1.8773 9 8 4.9670 -2.2556 2.6330 10 7 6.8503 -1.3125 1.9290 11 6 7.7568 -1.9297 2.9172 12 6 8.9875 -0.9749 2.9664 13 1 9.8890 -1.4495 3.3539 14 6 8.5611 0.2356 3.7990 15 6 9.4929 1.4198 3.5563 16 6 9.3958 1.8206 2.0799 17 6 9.9088 0.6563 1.2330 18 1 9.8391 0.9250 0.1789 19 7 11.3121 0.4026 1.5684 20 6 12.3035 1.1206 0.9546 21 1 12.0509 1.8743 0.2235 22 6 13.6331 0.8805 1.2729 23 7 13.9409 -0.0370 2.1650 24 14 14.9855 1.8604 0.4361 25 1 15.2747 3.0821 1.2292 26 1 16.2127 1.0296 0.3415 27 1 14.5441 2.2485 -0.9277 28 6 9.1087 -0.6005 1.4769 29 1 9.5889 -1.4209 0.9435 30 6 7.6527 -0.4864 1.0085 31 6 3.3150 -0.7444 0.9450 32 1 -1.0500 0.0000 0.0008 33 1 2.7746 1.3259 -1.6791 34 1 6.4170 0.1085 -0.1131 35 1 8.0591 -2.9237 2.5875 36 1 7.2761 -1.9816 3.8941 37 1 8.5867 -0.0297 4.8559 38 1 7.5443 0.5180 3.5259 39 1 10.5179 1.1333 3.7914 40 1 9.1907 2.2581 4.1840 41 1 8.3576 2.0322 1.8238 42 1 10.0067 2.7048 1.8980 43 1 11.5390 -0.2741 2.2254 44 1 14.8701 -0.2046 2.3877 45 1 7.3250 0.5521 1.0564 46 1 7.5573 -0.8621 -0.0103 47 1 2.7984 -1.3325 1.6892 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992793381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:38 Heat of formation + Delta-G solvation = 72.660222 kcal Electronic energy + Delta-G solvation = -29383.325485 eV Core-core repulsion = 25532.708497 eV Total energy + Delta-G solvation = -3850.616988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.30084 -41.06083 -39.64356 -37.06906 -35.50206 -35.02885 -33.73222 -33.08520 -32.17185 -31.37692 -30.79949 -28.01796 -26.85206 -25.63487 -25.02430 -24.27363 -23.15738 -22.32866 -21.42005 -19.95559 -19.54897 -19.15058 -18.34513 -17.87979 -17.36232 -17.17355 -16.70160 -16.51852 -16.10580 -15.64843 -15.43168 -15.26465 -15.17687 -15.02979 -14.63529 -14.56300 -14.26259 -14.02216 -13.79480 -13.60163 -13.03364 -12.95553 -12.73930 -12.69860 -12.64743 -12.54900 -12.41082 -12.13568 -12.01425 -11.81286 -11.76830 -11.45834 -11.26323 -11.12611 -10.97191 -10.83939 -10.65292 -10.56150 -9.91513 -9.77677 -8.89683 -7.86534 -5.11865 -0.62490 -0.23051 1.51211 1.51873 1.53199 1.59325 1.60388 1.80224 2.08355 2.61291 2.84627 3.03063 3.20722 3.31045 3.46926 3.50242 3.59128 3.66642 3.68219 3.78884 4.08199 4.11843 4.15590 4.25291 4.30805 4.34591 4.40233 4.48621 4.53203 4.67108 4.75871 4.77167 4.82812 4.83382 4.86059 4.90694 4.97416 5.08542 5.10936 5.14748 5.27319 5.38698 5.44082 5.49077 5.59406 5.66658 5.73383 6.28495 6.36540 6.48468 6.68144 6.88832 7.43836 8.21628 8.43892 9.36710 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019009 B = 0.002670 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.605822 B =10484.730580 C =11312.665592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.207 4.207 3 C -0.046 4.046 4 C 0.146 3.854 5 N -0.492 5.492 6 C 0.107 3.893 7 C -0.190 4.190 8 C 0.579 3.421 9 O -0.573 6.573 10 N -0.601 5.601 11 C 0.113 3.887 12 C -0.084 4.084 13 H 0.094 0.906 14 C -0.099 4.099 15 C -0.109 4.109 16 C -0.129 4.129 17 C 0.185 3.815 18 H 0.051 0.949 19 N -0.727 5.727 20 C -0.225 4.225 21 H 0.075 0.925 22 C -0.075 4.075 23 N -0.968 5.968 24 Si 0.961 3.039 25 H -0.293 1.293 26 H -0.302 1.302 27 H -0.270 1.270 28 C -0.090 4.090 29 H 0.075 0.925 30 C 0.096 3.904 31 C -0.006 4.006 32 H 0.265 0.735 33 H 0.191 0.809 34 H 0.205 0.795 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.044 0.956 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.042 0.958 43 H 0.374 0.626 44 H 0.247 0.753 45 H 0.097 0.903 46 H 0.102 0.898 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.139 0.374 -3.517 25.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.208 4.208 3 C -0.049 4.049 4 C -0.012 4.012 5 N -0.199 5.199 6 C -0.049 4.049 7 C -0.195 4.195 8 C 0.369 3.631 9 O -0.454 6.454 10 N -0.332 5.332 11 C -0.009 4.009 12 C -0.103 4.103 13 H 0.112 0.888 14 C -0.137 4.137 15 C -0.146 4.146 16 C -0.169 4.169 17 C 0.076 3.924 18 H 0.069 0.931 19 N -0.367 5.367 20 C -0.357 4.357 21 H 0.093 0.907 22 C -0.267 4.267 23 N -0.619 5.619 24 Si 0.792 3.208 25 H -0.221 1.221 26 H -0.229 1.229 27 H -0.195 1.195 28 C -0.110 4.110 29 H 0.094 0.906 30 C -0.026 4.026 31 C -0.032 4.032 32 H 0.281 0.719 33 H 0.208 0.792 34 H 0.221 0.779 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.061 0.939 43 H 0.207 0.793 44 H 0.056 0.944 45 H 0.114 0.886 46 H 0.120 0.880 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -24.951 0.558 -3.898 25.260 hybrid contribution 0.886 -0.385 0.754 1.226 sum -24.065 0.173 -3.143 24.270 Atomic orbital electron populations 1.25873 0.96421 0.95644 0.95609 1.19800 0.91834 1.04534 1.04633 1.16934 0.89087 1.00651 0.98186 1.23674 0.89658 0.92934 0.94908 1.67933 1.08131 1.20020 1.23847 1.24992 1.03616 0.88528 0.87792 1.20740 0.94616 1.03629 1.00506 1.17789 0.80623 0.81663 0.83016 1.90760 1.71179 1.38764 1.44686 1.48420 1.05065 1.47833 1.31915 1.22597 0.89205 0.96498 0.92571 1.22285 0.96862 0.95999 0.95192 0.88829 1.21395 0.98777 0.94180 0.99334 1.21314 0.99271 0.97452 0.96610 1.22099 0.99960 0.98779 0.96023 1.19786 0.83457 0.92108 0.97014 0.93083 1.42527 1.00418 1.44689 1.49069 1.19574 0.86925 1.13122 1.16107 0.90691 1.25379 0.99308 1.00955 1.01107 1.69787 1.17035 1.37280 1.37818 0.85312 0.79367 0.77621 0.78518 1.22097 1.22862 1.19527 1.21549 0.93749 0.99301 0.96373 0.90612 1.22586 0.90061 0.96286 0.93673 1.21842 0.92268 0.93444 0.95627 0.71906 0.79231 0.77904 0.90615 0.90207 0.91820 0.91868 0.93746 0.92397 0.90905 0.93940 0.79306 0.94419 0.88555 0.88006 0.83588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 19.25 74.32 1.43 0.20 16 2 C -0.21 -3.37 13.27 30.02 0.40 -2.98 16 3 C -0.05 -0.88 5.73 -21.35 -0.12 -1.00 16 4 C 0.15 2.55 10.91 85.04 0.93 3.47 16 5 N -0.49 -10.13 10.33 -193.75 -2.00 -12.13 16 6 C 0.11 2.18 9.81 85.04 0.83 3.01 16 7 C -0.19 -4.32 5.88 -20.03 -0.12 -4.44 16 8 C 0.58 15.32 7.82 86.79 0.68 16.00 16 9 O -0.57 -18.75 16.74 -3.86 -0.06 -18.82 16 10 N -0.60 -14.14 2.86 -822.09 -2.35 -16.49 16 11 C 0.11 2.71 6.16 87.15 0.54 3.24 16 12 C -0.08 -2.19 3.35 -9.46 -0.03 -2.23 16 13 H 0.09 2.71 7.92 -2.39 -0.02 2.69 16 14 C -0.10 -2.55 4.81 30.46 0.15 -2.40 16 15 C -0.11 -3.31 5.84 30.57 0.18 -3.13 16 16 C -0.13 -3.93 5.48 30.64 0.17 -3.76 16 17 C 0.18 6.13 2.51 44.28 0.11 6.24 16 18 H 0.05 1.70 8.06 -2.39 -0.02 1.68 16 19 N -0.73 -32.55 4.18 -326.35 -1.36 -33.92 16 20 C -0.23 -11.58 9.91 84.03 0.83 -10.75 16 21 H 0.08 3.72 7.83 -2.91 -0.02 3.70 16 22 C -0.08 -4.14 5.50 84.86 0.47 -3.67 16 23 N -0.97 -56.92 13.06 21.65 0.28 -56.64 16 24 Si 0.96 44.92 29.55 68.60 2.03 46.95 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 26 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 28 C -0.09 -2.40 2.21 -10.97 -0.02 -2.42 16 29 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 30 C 0.10 2.00 3.86 86.33 0.33 2.33 16 31 C -0.01 -0.12 9.43 22.99 0.22 0.09 16 32 H 0.26 0.23 7.80 -4.42 -0.03 0.20 16 33 H 0.19 2.16 8.06 -2.91 -0.02 2.14 16 34 H 0.21 3.60 2.77 -6.19 -0.02 3.58 16 35 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.08 1.95 7.93 -2.39 -0.02 1.93 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.06 1.53 7.17 -2.39 -0.02 1.52 16 39 H 0.04 1.68 7.38 -2.39 -0.02 1.67 16 40 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.07 1.80 6.75 -2.38 -0.02 1.78 16 42 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.37 18.22 7.20 -92.71 -0.67 17.55 16 44 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 45 H 0.10 1.83 5.07 -2.39 -0.01 1.82 16 46 H 0.10 1.78 6.82 -2.39 -0.02 1.76 16 47 H 0.15 3.17 7.75 -2.91 -0.02 3.15 16 Total: -1.00 -67.76 377.30 3.82 -63.94 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 0.33 Total: 29.31 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 6.96 Total: -2.19 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -5.44 Total: -119.19 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.06 Total: -18.82 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -67.76 3.82 -63.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992793381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.600 kcal (2) G-P(sol) polarization free energy of solvation -67.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds