Wall clock time and date at job start Tue Mar 31 2020 22:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39636 * 120.48850 * 289.97718 * 3 2 1 5 5 N 1.31755 * 120.87951 * 180.02562 * 4 3 2 6 6 C 1.31730 * 122.03794 * 0.02562 * 5 4 3 7 7 C 1.39599 * 120.88310 * 359.97168 * 6 5 4 8 8 C 1.47857 * 120.49018 * 180.02562 * 7 6 5 9 9 O 1.21551 * 120.00397 * 8.09575 * 8 7 6 10 10 N 1.34777 * 119.99764 * 188.09722 * 8 7 6 11 11 C 1.48902 * 125.69202 * 356.04109 * 10 8 7 12 12 C 1.52333 * 105.53590 * 177.03716 * 11 10 8 13 13 H 1.09000 * 109.87816 * 271.58791 * 12 11 10 14 14 C 1.51437 * 117.45070 * 145.05750 * 12 11 10 15 15 C 1.53846 * 107.04158 * 180.71787 * 14 12 11 16 16 C 1.52524 * 111.65628 * 57.20159 * 15 14 12 17 17 C 1.53825 * 111.70148 * 305.95438 * 16 15 14 18 18 H 1.09005 * 109.94026 * 298.07201 * 17 16 15 19 19 N 1.46505 * 109.93908 * 176.92159 * 17 16 15 20 20 C 1.36940 * 120.00201 * 84.99987 * 19 17 16 21 21 H 1.08000 * 120.00043 * 359.97438 * 20 19 17 22 22 C 1.38806 * 119.99957 * 179.97438 * 20 19 17 23 23 N 1.31623 * 120.00076 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 120.00036 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47118 * 89.99903 * 24 22 20 26 26 H 1.48497 * 109.47298 * 210.00048 * 24 22 20 27 27 H 1.48496 * 109.46957 * 329.99743 * 24 22 20 28 28 C 1.51607 * 107.02346 * 57.54066 * 17 16 15 29 29 H 1.09001 * 110.50740 * 55.20431 * 28 17 16 30 30 C 1.48661 * 125.78403 * 175.58465 * 10 8 7 31 31 C 1.39674 * 120.49039 * 110.24210 * 3 2 1 32 32 H 4.52737 * 13.92825 * 359.97438 * 4 2 1 33 33 H 1.08001 * 119.55934 * 0.02654 * 4 3 2 34 34 H 1.08001 * 119.55617 * 179.97438 * 6 5 4 35 35 H 1.08997 * 110.55266 * 57.92784 * 11 10 8 36 36 H 1.08994 * 110.10924 * 295.91388 * 11 10 8 37 37 H 1.09005 * 109.94121 * 61.33694 * 14 12 11 38 38 H 1.09001 * 110.01194 * 300.14020 * 14 12 11 39 39 H 1.09000 * 109.04007 * 296.64172 * 15 14 12 40 40 H 1.08997 * 108.98490 * 177.71989 * 15 14 12 41 41 H 1.09004 * 109.03486 * 185.38200 * 16 15 14 42 42 H 1.08997 * 109.03790 * 66.52244 * 16 15 14 43 43 H 0.96996 * 119.99625 * 264.99171 * 19 17 16 44 44 H 0.97001 * 119.99696 * 180.02562 * 23 22 20 45 45 H 1.08998 * 110.62701 * 37.13085 * 30 10 8 46 46 H 1.09001 * 110.62605 * 274.10702 * 30 10 8 47 47 H 1.07997 * 120.91810 * 359.97438 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3147 -0.4101 1.1309 5 7 4.6322 -0.4121 1.1395 6 6 5.3384 -0.0310 0.0949 7 6 4.7113 0.3948 -1.0773 8 6 5.5125 0.8203 -2.2449 9 8 6.7178 0.6635 -2.2446 10 7 4.9063 1.3820 -3.3096 11 6 3.4376 1.5579 -3.4802 12 6 3.2662 2.3018 -4.7985 13 1 3.3020 3.3772 -4.6246 14 6 2.0574 1.9567 -5.6428 15 6 2.1307 2.8243 -6.9111 16 6 3.4359 2.6043 -7.6690 17 6 4.6617 2.8136 -6.7635 18 1 4.6835 3.8407 -6.3990 19 7 5.8889 2.5219 -7.5086 20 6 6.4666 3.4922 -8.2833 21 1 6.0172 4.4723 -8.3454 22 6 7.6296 3.2160 -8.9888 23 7 8.1851 4.1487 -9.7331 24 14 8.4064 1.5204 -8.8821 25 1 7.8480 0.6520 -9.9495 26 1 9.8763 1.6374 -9.0576 27 1 8.1124 0.9240 -7.5543 28 6 4.5227 1.8526 -5.5992 29 1 4.4047 0.8307 -5.9596 30 6 5.5908 1.9384 -4.5062 31 6 3.3145 0.4174 -1.1293 32 1 -1.0500 0.0004 0.0004 33 1 2.7756 -0.7305 2.0102 34 1 6.4171 -0.0483 0.1460 35 1 3.0249 2.1459 -2.6605 36 1 2.9471 0.5859 -3.5306 37 1 1.1434 2.1797 -5.0922 38 1 2.0801 0.9009 -5.9129 39 1 2.0563 3.8744 -6.6284 40 1 1.2942 2.5714 -7.5626 41 1 3.4857 3.3052 -8.5023 42 1 3.4527 1.5871 -8.0603 43 1 6.2923 1.6416 -7.4531 44 1 8.9977 3.9555 -10.2264 45 1 6.4582 1.3328 -4.7686 46 1 5.8823 2.9746 -4.3346 47 1 2.7976 0.7449 -2.0191 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992793384.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:42 Heat of formation + Delta-G solvation = 91.541699 kcal Electronic energy + Delta-G solvation = -29165.097579 eV Core-core repulsion = 25315.299353 eV Total energy + Delta-G solvation = -3849.798225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.24781 -40.11943 -38.56770 -35.94190 -34.74165 -34.17419 -33.09388 -31.66042 -30.96566 -30.51180 -29.51130 -27.26765 -25.85090 -24.42627 -24.10243 -22.90421 -21.40809 -20.59384 -20.51194 -19.99142 -18.84785 -17.74449 -17.35125 -17.17991 -16.81093 -15.94395 -15.57719 -15.15401 -15.01681 -14.64299 -14.55312 -14.33301 -14.08313 -13.80966 -13.67235 -13.33263 -12.91120 -12.80087 -12.64498 -12.63840 -12.20453 -12.07570 -12.06739 -11.48536 -11.34046 -11.27548 -11.07943 -10.91340 -10.74238 -10.48646 -10.42186 -10.31204 -10.18596 -10.02997 -9.83887 -9.72378 -9.58498 -9.25636 -8.94823 -8.78802 -7.30986 -5.79358 -3.15662 0.13303 0.49010 2.19968 2.35238 2.66889 2.87289 3.37603 3.41144 3.46329 3.56394 3.61821 3.94060 4.11983 4.21677 4.35715 4.40645 4.53046 4.57950 4.69027 4.84199 4.96467 4.99036 5.04221 5.18001 5.28890 5.38639 5.42659 5.46259 5.49989 5.52073 5.56095 5.62317 5.67885 5.69637 5.81045 5.93931 5.96258 5.99043 6.03360 6.14371 6.28002 6.29924 6.38770 6.47005 6.73599 6.92155 6.98839 7.27432 7.42823 7.94239 7.95424 8.39498 9.17259 9.89991 10.08668 11.38770 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014523 B = 0.003079 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.498297 B = 9091.656978 C =10689.751245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.154 4.154 3 C -0.048 4.048 4 C 0.143 3.857 5 N -0.483 5.483 6 C 0.166 3.834 7 C -0.175 4.175 8 C 0.575 3.425 9 O -0.529 6.529 10 N -0.615 5.615 11 C 0.099 3.901 12 C -0.109 4.109 13 H 0.088 0.912 14 C -0.101 4.101 15 C -0.114 4.114 16 C -0.139 4.139 17 C 0.201 3.799 18 H 0.060 0.940 19 N -0.747 5.747 20 C -0.244 4.244 21 H 0.091 0.909 22 C 0.007 3.993 23 N -0.933 5.933 24 Si 0.881 3.119 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.276 1.276 28 C -0.107 4.107 29 H 0.082 0.918 30 C 0.123 3.877 31 C -0.057 4.057 32 H 0.228 0.772 33 H 0.164 0.836 34 H 0.174 0.826 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.361 0.639 44 H 0.260 0.740 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.928 -7.897 19.128 28.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.155 4.155 3 C -0.051 4.051 4 C -0.015 4.015 5 N -0.190 5.190 6 C 0.008 3.992 7 C -0.180 4.180 8 C 0.363 3.637 9 O -0.406 6.406 10 N -0.348 5.348 11 C -0.023 4.023 12 C -0.128 4.128 13 H 0.107 0.893 14 C -0.139 4.139 15 C -0.153 4.153 16 C -0.179 4.179 17 C 0.091 3.909 18 H 0.078 0.922 19 N -0.388 5.388 20 C -0.374 4.374 21 H 0.108 0.892 22 C -0.189 4.189 23 N -0.580 5.580 24 Si 0.712 3.288 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.202 1.202 28 C -0.127 4.127 29 H 0.101 0.899 30 C 0.002 3.998 31 C -0.082 4.082 32 H 0.244 0.756 33 H 0.182 0.818 34 H 0.191 0.809 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.194 0.806 44 H 0.070 0.930 45 H 0.103 0.897 46 H 0.098 0.902 47 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -17.669 -8.055 19.812 27.742 hybrid contribution -0.065 -0.934 -0.821 1.245 sum -17.735 -8.990 18.991 27.496 Atomic orbital electron populations 1.24954 0.95721 0.98503 0.98150 1.19588 0.91426 1.02079 1.02377 1.16866 0.88177 1.04121 0.95892 1.23208 0.89858 0.91943 0.96504 1.67853 1.07518 1.15100 1.28525 1.23175 1.01301 0.88491 0.86204 1.20933 0.93965 1.05995 0.97134 1.17607 0.86859 0.77840 0.81349 1.90827 1.13795 1.55463 1.80532 1.49251 1.07484 1.58999 1.19105 1.22347 0.81443 1.00134 0.98397 1.21942 0.96946 1.01002 0.92920 0.89333 1.21317 0.96129 1.00460 0.96007 1.21541 0.98354 0.99481 0.95881 1.22284 0.93943 1.01983 0.99727 1.19936 0.86443 0.96012 0.88493 0.92212 1.42770 1.26696 1.13019 1.56353 1.19030 1.05461 0.93668 1.19261 0.89170 1.24657 0.97856 0.97102 0.99264 1.69697 1.21980 1.32507 1.33830 0.86600 0.79049 0.85461 0.77729 1.21170 1.21719 1.20187 1.22438 0.93599 1.01383 0.95319 0.89933 1.22057 0.95975 0.99607 0.82167 1.23298 0.93409 0.92283 0.99185 0.75561 0.81845 0.80868 0.90237 0.90471 0.91899 0.91635 0.92248 0.92433 0.91390 0.92803 0.80572 0.93033 0.89654 0.90227 0.80897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.89 19.25 29.55 0.57 -0.32 16 2 C -0.15 -1.21 13.27 -38.83 -0.52 -1.73 16 3 C -0.05 -0.43 5.73 -106.91 -0.61 -1.05 16 4 C 0.14 1.27 10.91 -17.06 -0.19 1.08 16 5 N -0.48 -5.20 10.33 -12.59 -0.13 -5.33 16 6 C 0.17 1.87 10.75 -17.09 -0.18 1.69 16 7 C -0.18 -2.01 5.88 -104.87 -0.62 -2.63 16 8 C 0.58 8.18 7.83 -12.32 -0.10 8.08 16 9 O -0.53 -9.42 16.67 5.32 0.09 -9.33 16 10 N -0.61 -7.93 3.40 -172.21 -0.58 -8.52 16 11 C 0.10 0.92 4.59 -3.05 -0.01 0.90 16 12 C -0.11 -1.11 2.28 -90.36 -0.21 -1.31 16 13 H 0.09 0.91 7.92 -51.93 -0.41 0.50 16 14 C -0.10 -0.92 5.70 -27.08 -0.15 -1.07 16 15 C -0.11 -1.27 5.83 -26.53 -0.15 -1.42 16 16 C -0.14 -2.10 5.45 -26.55 -0.14 -2.25 16 17 C 0.20 3.41 2.51 -68.20 -0.17 3.24 16 18 H 0.06 1.06 7.94 -51.93 -0.41 0.65 16 19 N -0.75 -16.49 4.90 -53.69 -0.26 -16.75 16 20 C -0.24 -6.59 10.43 -15.06 -0.16 -6.75 16 21 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 22 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 23 N -0.93 -28.89 13.97 55.49 0.78 -28.12 16 24 Si 0.88 22.00 27.74 -169.99 -4.71 17.29 16 25 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 27 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 28 C -0.11 -1.48 2.01 -89.90 -0.18 -1.66 16 29 H 0.08 1.16 8.01 -51.93 -0.42 0.74 16 30 C 0.12 1.85 6.51 -2.81 -0.02 1.83 16 31 C -0.06 -0.54 8.44 -38.47 -0.32 -0.86 16 32 H 0.23 0.43 7.80 -54.09 -0.42 0.00 16 33 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.17 1.88 7.67 -52.49 -0.40 1.47 16 35 H 0.08 0.61 6.69 -51.93 -0.35 0.26 16 36 H 0.08 0.61 6.83 -51.93 -0.35 0.26 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.59 8.04 -51.93 -0.42 0.18 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.36 8.04 5.65 -40.82 -0.23 7.81 16 44 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 45 H 0.09 1.49 8.03 -51.93 -0.42 1.07 16 46 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 47 H 0.17 1.35 2.92 -53.54 -0.16 1.20 16 LS Contribution 381.40 15.07 5.75 5.75 Total: -1.00 -33.43 381.40 -8.88 -42.31 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.54 Total: 6.81 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -3.26 Total: -4.11 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -0.20 Total: -58.72 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.29 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.43 -8.88 -42.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992793384.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.854 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds