Wall clock time and date at job start Tue Mar 31 2020 22:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39636 * 120.48850 * 289.97718 * 3 2 1 5 5 N 1.31755 * 120.87951 * 180.02562 * 4 3 2 6 6 C 1.31730 * 122.03794 * 0.02562 * 5 4 3 7 7 C 1.39599 * 120.88310 * 359.97168 * 6 5 4 8 8 C 1.47857 * 120.49018 * 180.02562 * 7 6 5 9 9 O 1.21551 * 120.00397 * 8.09575 * 8 7 6 10 10 N 1.34777 * 119.99764 * 188.09722 * 8 7 6 11 11 C 1.48902 * 125.69202 * 356.04109 * 10 8 7 12 12 C 1.52333 * 105.53590 * 177.03716 * 11 10 8 13 13 H 1.09000 * 109.87816 * 271.58791 * 12 11 10 14 14 C 1.51437 * 117.45070 * 145.05750 * 12 11 10 15 15 C 1.53846 * 107.04158 * 180.71787 * 14 12 11 16 16 C 1.52524 * 111.65628 * 57.20159 * 15 14 12 17 17 C 1.53825 * 111.70148 * 305.95438 * 16 15 14 18 18 H 1.09005 * 109.94026 * 298.07201 * 17 16 15 19 19 N 1.46505 * 109.93908 * 176.92159 * 17 16 15 20 20 C 1.36940 * 120.00201 * 84.99987 * 19 17 16 21 21 H 1.08000 * 120.00043 * 359.97438 * 20 19 17 22 22 C 1.38806 * 119.99957 * 179.97438 * 20 19 17 23 23 N 1.31623 * 120.00076 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 120.00036 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47118 * 89.99903 * 24 22 20 26 26 H 1.48497 * 109.47298 * 210.00048 * 24 22 20 27 27 H 1.48496 * 109.46957 * 329.99743 * 24 22 20 28 28 C 1.51607 * 107.02346 * 57.54066 * 17 16 15 29 29 H 1.09001 * 110.50740 * 55.20431 * 28 17 16 30 30 C 1.48661 * 125.78403 * 175.58465 * 10 8 7 31 31 C 1.39674 * 120.49039 * 110.24210 * 3 2 1 32 32 H 4.52737 * 13.92825 * 359.97438 * 4 2 1 33 33 H 1.08001 * 119.55934 * 0.02654 * 4 3 2 34 34 H 1.08001 * 119.55617 * 179.97438 * 6 5 4 35 35 H 1.08997 * 110.55266 * 57.92784 * 11 10 8 36 36 H 1.08994 * 110.10924 * 295.91388 * 11 10 8 37 37 H 1.09005 * 109.94121 * 61.33694 * 14 12 11 38 38 H 1.09001 * 110.01194 * 300.14020 * 14 12 11 39 39 H 1.09000 * 109.04007 * 296.64172 * 15 14 12 40 40 H 1.08997 * 108.98490 * 177.71989 * 15 14 12 41 41 H 1.09004 * 109.03486 * 185.38200 * 16 15 14 42 42 H 1.08997 * 109.03790 * 66.52244 * 16 15 14 43 43 H 0.96996 * 119.99625 * 264.99171 * 19 17 16 44 44 H 0.97001 * 119.99696 * 180.02562 * 23 22 20 45 45 H 1.08998 * 110.62701 * 37.13085 * 30 10 8 46 46 H 1.09001 * 110.62605 * 274.10702 * 30 10 8 47 47 H 1.07997 * 120.91810 * 359.97438 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3147 -0.4101 1.1309 5 7 4.6322 -0.4121 1.1395 6 6 5.3384 -0.0310 0.0949 7 6 4.7113 0.3948 -1.0773 8 6 5.5125 0.8203 -2.2449 9 8 6.7178 0.6635 -2.2446 10 7 4.9063 1.3820 -3.3096 11 6 3.4376 1.5579 -3.4802 12 6 3.2662 2.3018 -4.7985 13 1 3.3020 3.3772 -4.6246 14 6 2.0574 1.9567 -5.6428 15 6 2.1307 2.8243 -6.9111 16 6 3.4359 2.6043 -7.6690 17 6 4.6617 2.8136 -6.7635 18 1 4.6835 3.8407 -6.3990 19 7 5.8889 2.5219 -7.5086 20 6 6.4666 3.4922 -8.2833 21 1 6.0172 4.4723 -8.3454 22 6 7.6296 3.2160 -8.9888 23 7 8.1851 4.1487 -9.7331 24 14 8.4064 1.5204 -8.8821 25 1 7.8480 0.6520 -9.9495 26 1 9.8763 1.6374 -9.0576 27 1 8.1124 0.9240 -7.5543 28 6 4.5227 1.8526 -5.5992 29 1 4.4047 0.8307 -5.9596 30 6 5.5908 1.9384 -4.5062 31 6 3.3145 0.4174 -1.1293 32 1 -1.0500 0.0004 0.0004 33 1 2.7756 -0.7305 2.0102 34 1 6.4171 -0.0483 0.1460 35 1 3.0249 2.1459 -2.6605 36 1 2.9471 0.5859 -3.5306 37 1 1.1434 2.1797 -5.0922 38 1 2.0801 0.9009 -5.9129 39 1 2.0563 3.8744 -6.6284 40 1 1.2942 2.5714 -7.5626 41 1 3.4857 3.3052 -8.5023 42 1 3.4527 1.5871 -8.0603 43 1 6.2923 1.6416 -7.4531 44 1 8.9977 3.9555 -10.2264 45 1 6.4582 1.3328 -4.7686 46 1 5.8823 2.9746 -4.3346 47 1 2.7976 0.7449 -2.0191 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992793384.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:41 Heat of formation + Delta-G solvation = 70.038426 kcal Electronic energy + Delta-G solvation = -29166.030031 eV Core-core repulsion = 25315.299353 eV Total energy + Delta-G solvation = -3850.730677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.16681 -41.03808 -39.66408 -37.21883 -35.72411 -35.31283 -33.95635 -33.48789 -31.66023 -31.44709 -30.96002 -28.39682 -26.86940 -25.40549 -25.15626 -24.34230 -22.39461 -21.69445 -21.55687 -21.15529 -19.76282 -19.43147 -18.25053 -17.96908 -17.66709 -17.02220 -16.71797 -16.51064 -16.07017 -15.77586 -15.48299 -15.39039 -15.19472 -14.93580 -14.77570 -14.65215 -14.31470 -13.94564 -13.89010 -13.60267 -13.46022 -13.23667 -12.90847 -12.89526 -12.64580 -12.45472 -12.33909 -11.91832 -11.85551 -11.77148 -11.76563 -11.55416 -11.46462 -11.27932 -11.00078 -10.92032 -10.88293 -10.54184 -10.00315 -9.76650 -9.29465 -8.02828 -5.34505 -0.61814 -0.21960 1.35159 1.37695 1.43939 1.52303 1.61409 1.77814 2.13174 2.46402 2.86674 2.97004 3.16989 3.28979 3.34106 3.40126 3.47327 3.63855 3.69292 3.77290 3.89100 4.08791 4.13264 4.21280 4.29537 4.31541 4.38877 4.45826 4.52515 4.61656 4.64007 4.68778 4.74477 4.76488 4.80048 4.85090 4.97924 5.05878 5.08963 5.24914 5.31717 5.35017 5.41889 5.42917 5.50975 5.66292 5.79068 6.22022 6.26553 6.54938 6.69422 6.87156 7.08365 7.85715 8.02377 9.18920 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014523 B = 0.003079 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.498297 B = 9091.656978 C =10689.751245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.206 4.206 3 C -0.040 4.040 4 C 0.141 3.859 5 N -0.498 5.498 6 C 0.153 3.847 7 C -0.185 4.185 8 C 0.572 3.428 9 O -0.579 6.579 10 N -0.612 5.612 11 C 0.097 3.903 12 C -0.094 4.094 13 H 0.090 0.910 14 C -0.093 4.093 15 C -0.109 4.109 16 C -0.131 4.131 17 C 0.194 3.806 18 H 0.047 0.953 19 N -0.752 5.752 20 C -0.219 4.219 21 H 0.060 0.940 22 C -0.062 4.062 23 N -0.984 5.984 24 Si 0.946 3.054 25 H -0.278 1.278 26 H -0.300 1.300 27 H -0.259 1.259 28 C -0.103 4.103 29 H 0.087 0.913 30 C 0.123 3.877 31 C -0.051 4.051 32 H 0.263 0.737 33 H 0.190 0.810 34 H 0.165 0.835 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.035 0.965 42 H 0.051 0.949 43 H 0.362 0.638 44 H 0.256 0.744 45 H 0.053 0.947 46 H 0.066 0.934 47 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.787 -9.700 21.309 33.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.207 4.207 3 C -0.042 4.042 4 C -0.017 4.017 5 N -0.205 5.205 6 C -0.004 4.004 7 C -0.190 4.190 8 C 0.361 3.639 9 O -0.460 6.460 10 N -0.345 5.345 11 C -0.023 4.023 12 C -0.113 4.113 13 H 0.108 0.892 14 C -0.130 4.130 15 C -0.147 4.147 16 C -0.171 4.171 17 C 0.086 3.914 18 H 0.065 0.935 19 N -0.394 5.394 20 C -0.350 4.350 21 H 0.078 0.922 22 C -0.254 4.254 23 N -0.635 5.635 24 Si 0.774 3.226 25 H -0.204 1.204 26 H -0.227 1.227 27 H -0.184 1.184 28 C -0.123 4.123 29 H 0.105 0.895 30 C 0.001 3.999 31 C -0.075 4.075 32 H 0.280 0.720 33 H 0.207 0.793 34 H 0.182 0.818 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.195 0.805 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.084 0.916 47 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -22.623 -9.874 22.030 33.086 hybrid contribution 1.251 -0.295 -1.419 1.914 sum -21.372 -10.169 20.612 31.385 Atomic orbital electron populations 1.25851 0.96343 0.95307 0.95332 1.19616 0.91487 1.04628 1.04947 1.16956 0.89251 1.02712 0.95257 1.23699 0.89258 0.91055 0.97648 1.67871 1.08667 1.15658 1.28307 1.23096 1.01249 0.89351 0.86734 1.20651 0.94783 1.07624 0.95931 1.18068 0.86549 0.77203 0.82041 1.90791 1.16057 1.57631 1.81539 1.49260 1.09106 1.58169 1.17920 1.22655 0.79092 1.01941 0.98650 1.21945 0.95433 1.01270 0.92689 0.89197 1.21316 0.96746 1.00395 0.94580 1.21495 0.95893 1.00455 0.96880 1.22120 0.95339 1.00871 0.98765 1.20186 0.85225 0.96391 0.89602 0.93466 1.42846 1.28422 1.11969 1.56203 1.19006 1.04556 0.93353 1.18082 0.92155 1.25384 0.99064 1.00875 1.00040 1.69865 1.22815 1.34853 1.35973 0.85541 0.77304 0.81165 0.78556 1.20388 1.22718 1.18396 1.22253 0.95462 1.00636 0.93959 0.89487 1.21846 0.95839 0.98288 0.83949 1.23442 0.92179 0.91784 1.00139 0.72048 0.79267 0.81787 0.87516 0.87843 0.88140 0.90781 0.91881 0.90689 0.94577 0.93000 0.80501 0.93523 0.92813 0.91605 0.79038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 19.25 74.32 1.43 0.78 16 2 C -0.21 -2.34 13.27 30.02 0.40 -1.94 16 3 C -0.04 -0.59 5.73 -21.35 -0.12 -0.71 16 4 C 0.14 2.20 10.91 85.04 0.93 3.13 16 5 N -0.50 -10.34 10.33 -193.76 -2.00 -12.34 16 6 C 0.15 3.50 10.75 85.04 0.91 4.41 16 7 C -0.18 -4.10 5.88 -20.03 -0.12 -4.22 16 8 C 0.57 16.38 7.83 86.79 0.68 17.06 16 9 O -0.58 -21.76 16.67 -3.87 -0.06 -21.82 16 10 N -0.61 -15.21 3.40 -817.02 -2.77 -17.99 16 11 C 0.10 1.43 4.59 85.69 0.39 1.82 16 12 C -0.09 -1.59 2.28 -10.62 -0.02 -1.61 16 13 H 0.09 1.56 7.92 -2.39 -0.02 1.54 16 14 C -0.09 -1.20 5.70 30.37 0.17 -1.03 16 15 C -0.11 -2.05 5.83 30.72 0.18 -1.87 16 16 C -0.13 -3.84 5.45 30.71 0.17 -3.68 16 17 C 0.19 6.59 2.51 44.81 0.11 6.71 16 18 H 0.05 1.72 7.94 -2.38 -0.02 1.70 16 19 N -0.75 -33.91 4.90 -323.78 -1.59 -35.49 16 20 C -0.22 -12.25 10.43 84.03 0.88 -11.38 16 21 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 22 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 23 N -0.98 -63.60 13.97 21.65 0.30 -63.30 16 24 Si 0.95 46.84 27.74 68.60 1.90 48.74 16 25 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 26 H -0.30 -15.25 7.11 99.48 0.71 -14.54 16 27 H -0.26 -11.92 6.52 99.48 0.65 -11.27 16 28 C -0.10 -2.72 2.01 -10.33 -0.02 -2.74 16 29 H 0.09 2.27 8.01 -2.39 -0.02 2.25 16 30 C 0.12 3.75 6.51 85.98 0.56 4.31 16 31 C -0.05 -0.81 8.44 22.99 0.19 -0.62 16 32 H 0.26 -0.78 7.80 -4.42 -0.03 -0.81 16 33 H 0.19 1.80 8.06 -2.91 -0.02 1.77 16 34 H 0.16 3.87 7.67 -2.91 -0.02 3.85 16 35 H 0.11 1.11 6.69 -2.39 -0.02 1.09 16 36 H 0.10 1.09 6.83 -2.39 -0.02 1.07 16 37 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.07 0.92 8.04 -2.39 -0.02 0.90 16 39 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 42 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.36 16.19 5.65 -92.71 -0.52 15.66 16 44 H 0.26 15.88 8.31 -92.71 -0.77 15.10 16 45 H 0.05 1.96 8.03 -2.39 -0.02 1.95 16 46 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 47 H 0.19 2.14 2.92 -3.90 -0.01 2.12 16 Total: -1.00 -79.01 381.40 3.37 -75.64 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.41 Total: 21.38 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 7.19 Total: 5.18 kcal Atomic # 7 Polarization: -123.06 SS G_CDS: -6.06 Total: -129.12 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.06 Total: -21.82 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 1.90 Total: 48.74 kcal Total: -79.01 3.37 -75.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992793384.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.678 kcal (2) G-P(sol) polarization free energy of solvation -79.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds