Wall clock time and date at job start Tue Mar 31 2020 22:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39987 * 120.46211 * 324.47173 * 3 2 1 5 5 C 1.38219 * 118.37133 * 179.72569 * 4 3 2 6 6 C 1.39497 * 119.20136 * 0.49517 * 5 4 3 7 7 C 1.47997 * 119.56687 * 179.76999 * 6 5 4 8 8 O 1.21536 * 119.99872 * 359.72610 * 7 6 5 9 9 N 1.34767 * 119.99771 * 179.72724 * 7 6 5 10 10 C 1.48241 * 125.78758 * 0.04354 * 9 7 6 11 11 C 1.52327 * 105.86917 * 176.78312 * 10 9 7 12 12 H 1.09007 * 110.24146 * 272.17304 * 11 10 9 13 13 C 1.51436 * 117.45348 * 145.31667 * 11 10 9 14 14 C 1.53852 * 107.04052 * 181.22659 * 13 11 10 15 15 C 1.52530 * 111.65852 * 57.19594 * 14 13 11 16 16 C 1.53809 * 111.70314 * 305.95536 * 15 14 13 17 17 H 1.09002 * 109.94353 * 176.91598 * 16 15 14 18 18 N 1.46503 * 109.94282 * 298.16128 * 16 15 14 19 19 C 1.36936 * 119.99753 * 208.79089 * 18 16 15 20 20 H 1.07998 * 120.00271 * 0.02562 * 19 18 16 21 21 C 1.38815 * 119.99891 * 179.97438 * 19 18 16 22 22 N 1.31619 * 119.99743 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00056 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47070 * 60.00160 * 23 21 19 25 25 H 1.48498 * 109.47033 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47211 * 300.00587 * 23 21 19 27 27 C 1.51614 * 107.02296 * 57.53981 * 16 15 14 28 28 H 1.09001 * 111.26552 * 55.63532 * 27 16 15 29 29 C 1.48663 * 125.78354 * 179.97438 * 9 7 6 30 30 N 1.32815 * 120.86114 * 359.49183 * 6 5 4 31 31 C 1.31294 * 121.78988 * 0.25780 * 30 6 5 32 32 H 4.52928 * 13.94712 * 359.97438 * 4 2 1 33 33 H 1.08004 * 120.81627 * 359.97438 * 4 3 2 34 34 H 1.08004 * 120.40091 * 180.26522 * 5 4 3 35 35 H 1.08994 * 110.17291 * 57.67608 * 10 9 7 36 36 H 1.09009 * 110.16639 * 295.87835 * 10 9 7 37 37 H 1.08993 * 109.94625 * 61.84762 * 13 11 10 38 38 H 1.08998 * 109.93863 * 300.60708 * 13 11 10 39 39 H 1.08998 * 109.03891 * 296.63547 * 14 13 11 40 40 H 1.09001 * 108.98190 * 177.71951 * 14 13 11 41 41 H 1.09003 * 109.03165 * 66.52573 * 15 14 13 42 42 H 1.09000 * 109.03306 * 185.37907 * 15 14 13 43 43 H 0.96997 * 120.00118 * 28.78804 * 18 16 15 44 44 H 0.96999 * 119.99748 * 179.97438 * 22 21 19 45 45 H 1.09003 * 110.62563 * 37.17059 * 29 9 7 46 46 H 1.08994 * 110.62899 * 274.15057 * 29 9 7 47 47 H 1.08001 * 119.65063 * 179.97438 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3161 -0.9810 0.7012 5 6 4.6974 -0.9428 0.6671 6 6 5.3327 0.0709 -0.0504 7 6 6.8112 0.1225 -0.0881 8 8 7.4638 -0.7118 0.5079 9 7 7.4340 1.0948 -0.7832 10 6 6.7681 2.1731 -1.5523 11 6 7.8882 3.0577 -2.0844 12 1 8.1415 3.8259 -1.3537 13 6 7.6920 3.6884 -3.4472 14 6 8.9645 4.4954 -3.7579 15 6 10.2123 3.6194 -3.7102 16 6 10.3274 2.8657 -2.3744 17 1 11.1970 2.2087 -2.3919 18 7 10.4436 3.8212 -1.2699 19 6 11.1194 3.4724 -0.1311 20 1 11.5670 2.4931 -0.0473 21 6 11.2299 4.3779 0.9152 22 7 10.6848 5.5715 0.8129 23 14 12.1523 3.9024 2.4684 24 1 13.5600 3.5746 2.1274 25 1 12.1258 5.0365 3.4267 26 1 11.5040 2.7177 3.0861 27 6 9.0623 2.0451 -2.2173 28 1 8.9087 1.3876 -3.0731 29 6 8.9052 1.2685 -0.9074 30 7 4.6279 0.9869 -0.7047 31 6 3.3150 0.9822 -0.7012 32 1 -1.0499 -0.0004 0.0009 33 1 2.7975 -1.7519 1.2519 34 1 5.2779 -1.6865 1.1929 35 1 6.1115 2.7492 -0.9005 36 1 6.1993 1.7484 -2.3795 37 1 6.8269 4.3511 -3.4292 38 1 7.5513 2.9121 -4.1992 39 1 9.0646 5.2971 -3.0263 40 1 8.8738 4.9313 -4.7528 41 1 10.1699 2.8957 -4.5242 42 1 11.0931 4.2481 -3.8407 43 1 10.0419 4.7009 -1.3453 44 1 10.7618 6.2041 1.5441 45 1 9.4020 0.3005 -0.9731 46 1 9.2958 1.8457 -0.0694 47 1 2.7765 1.7443 -1.2450 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992853076.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:48 Heat of formation + Delta-G solvation = 78.251147 kcal Electronic energy + Delta-G solvation = -29506.707920 eV Core-core repulsion = 25656.333373 eV Total energy + Delta-G solvation = -3850.374547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.83106 -39.81892 -38.24637 -35.42749 -34.62091 -33.61740 -32.50326 -31.37411 -31.14047 -30.05153 -28.82352 -26.80684 -25.64459 -24.06805 -23.82641 -23.08894 -20.88934 -20.72843 -19.80615 -19.44172 -18.68115 -17.31627 -17.10363 -16.91376 -15.92312 -15.66334 -15.34097 -14.85129 -14.69501 -14.46739 -14.32433 -13.93142 -13.74243 -13.65190 -13.43739 -12.99004 -12.77559 -12.52999 -12.30223 -12.17441 -11.88625 -11.77415 -11.52046 -11.36280 -11.15547 -11.08268 -10.82820 -10.72056 -10.33554 -10.24056 -10.14990 -10.11988 -10.05078 -9.86018 -9.47583 -9.44870 -9.28485 -9.07706 -8.85346 -8.17493 -6.96111 -5.77143 -3.04795 0.12428 0.94939 2.28789 2.36226 3.11398 3.15600 3.46624 3.51010 3.52902 3.74529 3.81300 4.04290 4.46456 4.51027 4.60834 4.81071 4.83255 4.96961 5.16223 5.22711 5.38355 5.46658 5.52238 5.56602 5.65697 5.69581 5.77442 5.79953 5.84479 5.90721 6.02000 6.07439 6.09962 6.15555 6.18967 6.27674 6.31716 6.42873 6.44957 6.58498 6.70225 6.71933 6.82212 6.91309 6.94605 7.05853 7.17463 7.49589 7.71476 7.83542 8.34794 8.41926 9.53849 10.10850 10.45837 11.44992 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012024 B = 0.003294 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.120951 B = 8498.880238 C = 9637.660309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.152 4.152 3 C -0.028 4.028 4 C -0.060 4.060 5 C -0.112 4.112 6 C 0.099 3.901 7 C 0.573 3.427 8 O -0.543 6.543 9 N -0.592 5.592 10 C 0.134 3.866 11 C -0.113 4.113 12 H 0.103 0.897 13 C -0.096 4.096 14 C -0.114 4.114 15 C -0.121 4.121 16 C 0.189 3.811 17 H 0.054 0.946 18 N -0.715 5.715 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.009 4.009 22 N -0.931 5.931 23 Si 0.901 3.099 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.285 1.285 27 C -0.120 4.120 28 H 0.064 0.936 29 C 0.114 3.886 30 N -0.446 5.446 31 C 0.123 3.877 32 H 0.227 0.773 33 H 0.144 0.856 34 H 0.154 0.846 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.062 0.938 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.065 0.935 46 H 0.105 0.895 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.865 -8.956 -7.560 21.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.152 4.152 3 C -0.030 4.030 4 C -0.086 4.086 5 C -0.132 4.132 6 C -0.039 4.039 7 C 0.359 3.641 8 O -0.421 6.421 9 N -0.322 5.322 10 C 0.011 3.989 11 C -0.132 4.132 12 H 0.121 0.879 13 C -0.133 4.133 14 C -0.152 4.152 15 C -0.160 4.160 16 C 0.078 3.922 17 H 0.072 0.928 18 N -0.357 5.357 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.206 4.206 22 N -0.579 5.579 23 Si 0.732 3.268 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.212 1.212 27 C -0.142 4.142 28 H 0.083 0.917 29 C -0.006 4.006 30 N -0.156 5.156 31 C -0.038 4.038 32 H 0.244 0.756 33 H 0.162 0.838 34 H 0.172 0.828 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.220 0.780 44 H 0.065 0.935 45 H 0.084 0.916 46 H 0.123 0.877 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -16.901 -8.852 -7.516 20.506 hybrid contribution -0.472 -0.556 1.404 1.581 sum -17.372 -9.407 -6.113 20.680 Atomic orbital electron populations 1.24936 0.95731 0.98548 0.98494 1.19702 0.91587 1.01979 1.01957 1.17161 0.87965 0.97711 1.00200 1.21645 0.93475 0.97150 0.96283 1.22064 0.94383 0.98738 0.98041 1.21418 0.94763 0.92345 0.95339 1.17400 0.85344 0.81485 0.79865 1.90786 1.65777 1.40024 1.45486 1.49079 1.08826 1.26728 1.47617 1.21739 0.94421 0.87742 0.94972 1.21988 0.94541 0.98486 0.98225 0.87906 1.21224 0.97573 0.98863 0.95690 1.21466 0.94172 0.98749 1.00795 1.21804 0.97724 0.98815 0.97648 1.19886 0.93599 0.90982 0.87751 0.92772 1.42438 1.64794 1.14558 1.13881 1.19174 1.26461 0.98550 0.92790 0.91167 1.24689 1.01214 0.96163 0.98499 1.69636 1.49351 1.06103 1.32797 0.86364 0.79779 0.77208 0.83484 1.21286 1.21811 1.21162 1.22838 0.99344 0.96296 0.95717 0.91738 1.22314 0.77960 1.00034 1.00281 1.67936 1.07754 1.22966 1.16960 1.23025 0.89310 0.96114 0.95325 0.75636 0.83774 0.82814 0.90832 0.91622 0.92295 0.92529 0.91433 0.92972 0.92889 0.91930 0.77963 0.93509 0.91622 0.87681 0.81664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 19.25 29.55 0.57 -0.51 16 2 C -0.15 -1.37 13.28 -38.84 -0.52 -1.88 16 3 C -0.03 -0.28 5.75 -106.68 -0.61 -0.90 16 4 C -0.06 -0.59 9.89 -38.93 -0.39 -0.98 16 5 C -0.11 -1.35 9.61 -39.12 -0.38 -1.73 16 6 C 0.10 1.46 6.72 -82.97 -0.56 0.91 16 7 C 0.57 10.36 7.85 -12.26 -0.10 10.26 16 8 O -0.54 -11.17 16.60 5.33 0.09 -11.08 16 9 N -0.59 -10.59 3.38 -171.90 -0.58 -11.17 16 10 C 0.13 2.09 5.09 -3.43 -0.02 2.07 16 11 C -0.11 -1.83 2.24 -90.36 -0.20 -2.03 16 12 H 0.10 2.04 6.54 -51.93 -0.34 1.70 16 13 C -0.10 -1.29 5.71 -27.08 -0.15 -1.45 16 14 C -0.11 -1.64 5.57 -26.53 -0.15 -1.79 16 15 C -0.12 -1.87 5.52 -26.55 -0.15 -2.02 16 16 C 0.19 3.48 3.01 -68.21 -0.21 3.27 16 17 H 0.05 1.03 8.06 -51.93 -0.42 0.61 16 18 N -0.72 -16.34 3.83 -53.70 -0.21 -16.54 16 19 C -0.24 -6.23 8.10 -15.06 -0.12 -6.35 16 20 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 21 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 22 N -0.93 -27.13 13.06 55.49 0.72 -26.41 16 23 Si 0.90 22.34 29.55 -169.99 -5.02 17.31 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 27 C -0.12 -2.03 2.34 -89.88 -0.21 -2.24 16 28 H 0.06 1.01 8.03 -51.93 -0.42 0.59 16 29 C 0.11 2.19 6.44 -2.80 -0.02 2.17 16 30 N -0.45 -5.98 6.85 -9.49 -0.07 -6.04 16 31 C 0.12 1.32 10.92 -17.15 -0.19 1.13 16 32 H 0.23 0.62 7.80 -54.09 -0.42 0.19 16 33 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 34 H 0.15 1.77 7.63 -52.48 -0.40 1.37 16 35 H 0.07 1.18 7.32 -51.93 -0.38 0.80 16 36 H 0.07 0.94 7.63 -51.92 -0.40 0.55 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.70 8.04 -51.93 -0.42 0.29 16 39 H 0.07 1.12 7.03 -51.93 -0.36 0.75 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.39 9.41 5.96 -40.82 -0.24 9.16 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 46 H 0.11 2.39 6.14 -51.93 -0.32 2.07 16 47 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 380.44 15.07 5.73 5.73 Total: -1.00 -31.18 380.44 -9.43 -40.61 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -6.62 Total: 9.99 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -3.48 Total: -2.41 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -0.13 Total: -60.16 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.18 -9.43 -40.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992853076.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.860 kcal (2) G-P(sol) polarization free energy of solvation -31.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds