Wall clock time and date at job start Tue Mar 31 2020 22:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39987 * 120.46211 * 324.47173 * 3 2 1 5 5 C 1.38219 * 118.37133 * 179.72569 * 4 3 2 6 6 C 1.39497 * 119.20136 * 0.49517 * 5 4 3 7 7 C 1.47997 * 119.56687 * 179.76999 * 6 5 4 8 8 O 1.21536 * 119.99872 * 359.72610 * 7 6 5 9 9 N 1.34767 * 119.99771 * 179.72724 * 7 6 5 10 10 C 1.48241 * 125.78758 * 0.04354 * 9 7 6 11 11 C 1.52327 * 105.86917 * 176.78312 * 10 9 7 12 12 H 1.09007 * 110.24146 * 272.17304 * 11 10 9 13 13 C 1.51436 * 117.45348 * 145.31667 * 11 10 9 14 14 C 1.53852 * 107.04052 * 181.22659 * 13 11 10 15 15 C 1.52530 * 111.65852 * 57.19594 * 14 13 11 16 16 C 1.53809 * 111.70314 * 305.95536 * 15 14 13 17 17 H 1.09002 * 109.94353 * 176.91598 * 16 15 14 18 18 N 1.46503 * 109.94282 * 298.16128 * 16 15 14 19 19 C 1.36936 * 119.99753 * 208.79089 * 18 16 15 20 20 H 1.07998 * 120.00271 * 0.02562 * 19 18 16 21 21 C 1.38815 * 119.99891 * 179.97438 * 19 18 16 22 22 N 1.31619 * 119.99743 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00056 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47070 * 60.00160 * 23 21 19 25 25 H 1.48498 * 109.47033 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47211 * 300.00587 * 23 21 19 27 27 C 1.51614 * 107.02296 * 57.53981 * 16 15 14 28 28 H 1.09001 * 111.26552 * 55.63532 * 27 16 15 29 29 C 1.48663 * 125.78354 * 179.97438 * 9 7 6 30 30 N 1.32815 * 120.86114 * 359.49183 * 6 5 4 31 31 C 1.31294 * 121.78988 * 0.25780 * 30 6 5 32 32 H 4.52928 * 13.94712 * 359.97438 * 4 2 1 33 33 H 1.08004 * 120.81627 * 359.97438 * 4 3 2 34 34 H 1.08004 * 120.40091 * 180.26522 * 5 4 3 35 35 H 1.08994 * 110.17291 * 57.67608 * 10 9 7 36 36 H 1.09009 * 110.16639 * 295.87835 * 10 9 7 37 37 H 1.08993 * 109.94625 * 61.84762 * 13 11 10 38 38 H 1.08998 * 109.93863 * 300.60708 * 13 11 10 39 39 H 1.08998 * 109.03891 * 296.63547 * 14 13 11 40 40 H 1.09001 * 108.98190 * 177.71951 * 14 13 11 41 41 H 1.09003 * 109.03165 * 66.52573 * 15 14 13 42 42 H 1.09000 * 109.03306 * 185.37907 * 15 14 13 43 43 H 0.96997 * 120.00118 * 28.78804 * 18 16 15 44 44 H 0.96999 * 119.99748 * 179.97438 * 22 21 19 45 45 H 1.09003 * 110.62563 * 37.17059 * 29 9 7 46 46 H 1.08994 * 110.62899 * 274.15057 * 29 9 7 47 47 H 1.08001 * 119.65063 * 179.97438 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3161 -0.9810 0.7012 5 6 4.6974 -0.9428 0.6671 6 6 5.3327 0.0709 -0.0504 7 6 6.8112 0.1225 -0.0881 8 8 7.4638 -0.7118 0.5079 9 7 7.4340 1.0948 -0.7832 10 6 6.7681 2.1731 -1.5523 11 6 7.8882 3.0577 -2.0844 12 1 8.1415 3.8259 -1.3537 13 6 7.6920 3.6884 -3.4472 14 6 8.9645 4.4954 -3.7579 15 6 10.2123 3.6194 -3.7102 16 6 10.3274 2.8657 -2.3744 17 1 11.1970 2.2087 -2.3919 18 7 10.4436 3.8212 -1.2699 19 6 11.1194 3.4724 -0.1311 20 1 11.5670 2.4931 -0.0473 21 6 11.2299 4.3779 0.9152 22 7 10.6848 5.5715 0.8129 23 14 12.1523 3.9024 2.4684 24 1 13.5600 3.5746 2.1274 25 1 12.1258 5.0365 3.4267 26 1 11.5040 2.7177 3.0861 27 6 9.0623 2.0451 -2.2173 28 1 8.9087 1.3876 -3.0731 29 6 8.9052 1.2685 -0.9074 30 7 4.6279 0.9869 -0.7047 31 6 3.3150 0.9822 -0.7012 32 1 -1.0499 -0.0004 0.0009 33 1 2.7975 -1.7519 1.2519 34 1 5.2779 -1.6865 1.1929 35 1 6.1115 2.7492 -0.9005 36 1 6.1993 1.7484 -2.3795 37 1 6.8269 4.3511 -3.4292 38 1 7.5513 2.9121 -4.1992 39 1 9.0646 5.2971 -3.0263 40 1 8.8738 4.9313 -4.7528 41 1 10.1699 2.8957 -4.5242 42 1 11.0931 4.2481 -3.8407 43 1 10.0419 4.7009 -1.3453 44 1 10.7618 6.2041 1.5441 45 1 9.4020 0.3005 -0.9731 46 1 9.2958 1.8457 -0.0694 47 1 2.7765 1.7443 -1.2450 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992853076.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:48 Heat of formation + Delta-G solvation = 60.525533 kcal Electronic energy + Delta-G solvation = -29507.476560 eV Core-core repulsion = 25656.333373 eV Total energy + Delta-G solvation = -3851.143187 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.96185 -41.03685 -39.59630 -36.90186 -35.42284 -35.30041 -33.35420 -33.06693 -32.20218 -31.20495 -30.49058 -28.24029 -26.77694 -25.65760 -24.74269 -24.58079 -22.15418 -22.06336 -21.10204 -20.12841 -20.11199 -19.12753 -18.50310 -17.95827 -17.03581 -16.65604 -16.55566 -16.50105 -15.89974 -15.81278 -15.63067 -15.46862 -15.12568 -14.82609 -14.54250 -14.25921 -14.08446 -13.91556 -13.61191 -13.45453 -13.21689 -13.07766 -12.82365 -12.66426 -12.65175 -12.61026 -12.39486 -12.16148 -11.87897 -11.78920 -11.60272 -11.38391 -11.32386 -11.10149 -10.94990 -10.86192 -10.60239 -10.43401 -9.95244 -9.60062 -8.92470 -7.90793 -5.14452 -0.78392 0.11418 1.37136 1.43839 1.46236 1.50601 1.70844 1.83319 2.18850 2.56816 2.88242 2.90874 3.24081 3.40095 3.45461 3.66605 3.74315 3.84224 3.89952 3.91141 4.11068 4.14333 4.30630 4.43598 4.47160 4.57457 4.63251 4.64877 4.69965 4.73360 4.74367 4.83408 4.89145 4.91155 5.01696 5.08204 5.11740 5.15629 5.19464 5.27348 5.42500 5.45453 5.47750 5.51982 5.58604 5.60429 5.79188 6.32720 6.41871 6.49496 6.59924 6.98323 7.40422 8.18751 8.41794 9.32188 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012024 B = 0.003294 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.120951 B = 8498.880238 C = 9637.660309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.209 4.209 3 C -0.012 4.012 4 C -0.056 4.056 5 C -0.110 4.110 6 C 0.067 3.933 7 C 0.566 3.434 8 O -0.581 6.581 9 N -0.598 5.598 10 C 0.143 3.857 11 C -0.104 4.104 12 H 0.060 0.940 13 C -0.087 4.087 14 C -0.111 4.111 15 C -0.114 4.114 16 C 0.180 3.820 17 H 0.046 0.954 18 N -0.720 5.720 19 C -0.220 4.220 20 H 0.069 0.931 21 C -0.070 4.070 22 N -0.964 5.964 23 Si 0.952 3.048 24 H -0.278 1.278 25 H -0.297 1.297 26 H -0.291 1.291 27 C -0.109 4.109 28 H 0.092 0.908 29 C 0.116 3.884 30 N -0.458 5.458 31 C 0.116 3.884 32 H 0.265 0.735 33 H 0.174 0.826 34 H 0.153 0.847 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.037 0.963 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.052 0.948 43 H 0.377 0.623 44 H 0.247 0.753 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.318 -10.002 -9.706 25.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.210 4.210 3 C -0.015 4.015 4 C -0.081 4.081 5 C -0.131 4.131 6 C -0.070 4.070 7 C 0.354 3.646 8 O -0.462 6.462 9 N -0.328 5.328 10 C 0.022 3.978 11 C -0.123 4.123 12 H 0.078 0.922 13 C -0.124 4.124 14 C -0.149 4.149 15 C -0.152 4.152 16 C 0.071 3.929 17 H 0.064 0.936 18 N -0.361 5.361 19 C -0.352 4.352 20 H 0.086 0.914 21 C -0.263 4.263 22 N -0.615 5.615 23 Si 0.783 3.217 24 H -0.204 1.204 25 H -0.223 1.223 26 H -0.218 1.218 27 C -0.130 4.130 28 H 0.111 0.889 29 C -0.006 4.006 30 N -0.169 5.169 31 C -0.045 4.045 32 H 0.281 0.719 33 H 0.192 0.808 34 H 0.170 0.830 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.056 0.944 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.071 0.929 43 H 0.211 0.789 44 H 0.056 0.944 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -20.350 -9.925 -9.703 24.633 hybrid contribution 0.372 -0.329 2.049 2.108 sum -19.978 -10.254 -7.654 23.724 Atomic orbital electron populations 1.25894 0.96402 0.95356 0.95042 1.19765 0.91734 1.04740 1.04742 1.17332 0.89117 0.96630 0.98380 1.21939 0.92336 0.97772 0.96074 1.22109 0.95530 0.97982 0.97516 1.20968 0.92800 0.94679 0.98513 1.18030 0.87034 0.80728 0.78812 1.90737 1.67141 1.41417 1.46933 1.49183 1.08206 1.27383 1.48058 1.21751 0.93989 0.86974 0.95113 1.21882 0.94232 0.97186 0.99038 0.92183 1.21213 0.97670 0.99495 0.94051 1.21447 0.94019 0.97869 1.01550 1.21728 0.98040 0.99226 0.96225 1.20154 0.93973 0.90655 0.88150 0.93558 1.42540 1.64261 1.15018 1.14258 1.19429 1.24446 0.97822 0.93535 0.91353 1.25274 1.03322 0.96615 1.01073 1.69762 1.51669 1.06960 1.33154 0.85526 0.79110 0.76249 0.80832 1.20434 1.22321 1.21799 1.22686 0.98783 0.96345 0.95232 0.88942 1.22063 0.79261 0.99289 0.99985 1.67801 1.09059 1.22771 1.17249 1.23460 0.88410 0.96981 0.95603 0.71882 0.80835 0.82976 0.91493 0.89354 0.90698 0.89900 0.94418 0.89994 0.89623 0.92907 0.78945 0.94365 0.92237 0.92170 0.79137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 19.25 74.32 1.43 0.46 16 2 C -0.21 -3.07 13.28 30.02 0.40 -2.67 16 3 C -0.01 -0.22 5.75 -21.20 -0.12 -0.35 16 4 C -0.06 -1.01 9.89 22.69 0.22 -0.79 16 5 C -0.11 -2.68 9.61 22.57 0.22 -2.46 16 6 C 0.07 2.00 6.72 41.89 0.28 2.28 16 7 C 0.57 21.38 7.85 86.83 0.68 22.06 16 8 O -0.58 -25.34 16.60 -3.83 -0.06 -25.40 16 9 N -0.60 -22.12 3.38 -816.07 -2.76 -24.88 16 10 C 0.14 4.44 5.09 85.82 0.44 4.88 16 11 C -0.10 -3.33 2.24 -10.63 -0.02 -3.35 16 12 H 0.06 2.48 6.54 -2.38 -0.02 2.46 16 13 C -0.09 -2.10 5.71 30.37 0.17 -1.93 16 14 C -0.11 -2.97 5.57 30.73 0.17 -2.80 16 15 C -0.11 -3.31 5.52 30.71 0.17 -3.14 16 16 C 0.18 6.64 3.01 44.81 0.13 6.77 16 17 H 0.05 1.78 8.06 -2.39 -0.02 1.76 16 18 N -0.72 -34.16 3.83 -323.80 -1.24 -35.40 16 19 C -0.22 -11.95 8.10 84.03 0.68 -11.27 16 20 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 21 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 22 N -0.96 -58.69 13.06 21.65 0.28 -58.41 16 23 Si 0.95 47.81 29.55 68.60 2.03 49.84 16 24 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 25 H -0.30 -15.02 7.11 99.48 0.71 -14.32 16 26 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 27 C -0.11 -3.65 2.34 -10.32 -0.02 -3.67 16 28 H 0.09 2.66 8.03 -2.39 -0.02 2.64 16 29 C 0.12 4.63 6.44 85.99 0.55 5.19 16 30 N -0.46 -12.00 6.85 -183.93 -1.26 -13.26 16 31 C 0.12 2.30 10.92 85.18 0.93 3.23 16 32 H 0.27 -0.15 7.80 -4.42 -0.03 -0.18 16 33 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 34 H 0.15 3.62 7.63 -2.91 -0.02 3.60 16 35 H 0.07 2.17 7.32 -2.39 -0.02 2.15 16 36 H 0.09 2.36 7.63 -2.38 -0.02 2.34 16 37 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.08 1.66 8.04 -2.39 -0.02 1.64 16 39 H 0.04 1.24 7.03 -2.39 -0.02 1.22 16 40 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.38 19.25 5.96 -92.71 -0.55 18.69 16 44 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 45 H 0.06 2.39 8.07 -2.39 -0.02 2.37 16 46 H 0.06 2.94 6.14 -2.39 -0.01 2.93 16 47 H 0.19 2.63 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -73.02 380.44 4.20 -68.82 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: 0.43 Total: 29.84 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 6.78 Total: 8.86 kcal Atomic # 7 Polarization: -126.97 SS G_CDS: -4.98 Total: -131.95 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.06 Total: -25.40 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.84 kcal Total: -73.02 4.20 -68.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992853076.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.346 kcal (2) G-P(sol) polarization free energy of solvation -73.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds