Wall clock time and date at job start Tue Mar 31 2020 22:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39716 * 119.58974 * 137.52520 * 3 2 1 5 5 C 1.37976 * 119.20220 * 180.02562 * 4 3 2 6 6 C 1.40246 * 118.39725 * 359.97438 * 5 4 3 7 7 C 1.47670 * 120.43997 * 180.02562 * 6 5 4 8 8 O 1.21566 * 120.00167 * 154.69490 * 7 6 5 9 9 N 1.34775 * 119.99830 * 334.68962 * 7 6 5 10 10 C 1.47073 * 125.44662 * 3.97722 * 9 7 6 11 11 C 1.55062 * 105.85855 * 199.56286 * 10 9 7 12 12 H 1.09000 * 111.61585 * 209.09469 * 11 10 9 13 13 C 1.52899 * 107.38319 * 85.78813 * 11 10 9 14 14 C 1.52854 * 109.62395 * 193.23062 * 13 11 10 15 15 C 1.52650 * 108.65397 * 64.95045 * 14 13 11 16 16 C 1.51493 * 110.89796 * 300.20148 * 15 14 13 17 17 H 1.08997 * 108.16014 * 285.59504 * 16 15 14 18 18 N 1.46498 * 108.30341 * 168.54460 * 16 15 14 19 19 C 1.36935 * 119.99987 * 79.21401 * 18 16 15 20 20 H 1.07997 * 120.00175 * 359.97438 * 19 18 16 21 21 C 1.38816 * 120.00099 * 180.02562 * 19 18 16 22 22 N 1.31620 * 119.99556 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00106 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47433 * 59.99934 * 23 21 19 25 25 H 1.48497 * 109.47241 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47243 * 299.99841 * 23 21 19 27 27 C 1.49682 * 115.37143 * 47.01649 * 16 15 14 28 28 H 1.09007 * 107.25824 * 200.79788 * 27 16 15 29 29 C 1.47139 * 125.44094 * 183.66585 * 9 7 6 30 30 C 1.39655 * 119.11720 * 0.02562 * 6 5 4 31 31 N 1.31477 * 120.71356 * 359.97438 * 30 6 5 32 32 H 4.51253 * 14.17570 * 359.97438 * 4 2 1 33 33 H 1.08001 * 120.40301 * 359.97438 * 4 3 2 34 34 H 1.08001 * 120.80346 * 179.97438 * 5 4 3 35 35 H 1.09002 * 110.16968 * 318.65714 * 10 9 7 36 36 H 1.09000 * 110.17248 * 80.38483 * 10 9 7 37 37 H 1.08995 * 109.44381 * 313.28183 * 13 11 10 38 38 H 1.09004 * 109.44356 * 73.18196 * 13 11 10 39 39 H 1.09006 * 109.60899 * 305.20662 * 14 13 11 40 40 H 1.08996 * 109.60970 * 184.70452 * 14 13 11 41 41 H 1.08999 * 109.19553 * 179.83669 * 15 14 13 42 42 H 1.09002 * 109.15304 * 60.53848 * 15 14 13 43 43 H 0.96998 * 119.99840 * 259.21413 * 18 16 15 44 44 H 0.97002 * 119.99412 * 179.97438 * 22 21 19 45 45 H 1.08995 * 109.98008 * 299.88764 * 29 9 7 46 46 H 1.09001 * 109.97914 * 61.17496 * 29 9 7 47 47 H 1.07998 * 119.64038 * 180.27523 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2955 0.8971 -0.8204 5 6 4.6752 0.8904 -0.8145 6 6 5.3343 -0.0225 0.0216 7 6 6.8097 -0.0680 0.0639 8 8 7.3768 -0.4843 1.0553 9 7 7.5275 0.3518 -0.9967 10 6 6.9718 0.9519 -2.2191 11 6 8.0704 0.8003 -3.3028 12 1 8.0166 1.5981 -4.0435 13 6 7.9034 -0.5831 -3.9322 14 6 9.1403 -0.9212 -4.7642 15 6 10.3415 -1.0354 -3.8292 16 6 10.5753 0.2653 -3.0886 17 1 11.0102 0.9804 -3.7868 18 7 11.5479 0.0186 -2.0212 19 6 12.8837 -0.0496 -2.3144 20 1 13.2203 0.0782 -3.3326 21 6 13.8053 -0.2839 -1.3031 22 7 13.3949 -0.4411 -0.0624 23 14 15.6274 -0.3776 -1.7032 24 1 16.0698 0.9079 -2.3007 25 1 16.3949 -0.6354 -0.4583 26 1 15.8662 -1.4803 -2.6686 27 6 9.3563 0.8848 -2.4797 28 1 9.5748 1.9409 -2.3215 29 6 8.9928 0.2889 -1.1141 30 6 4.5766 -0.8880 0.8137 31 7 3.2628 -0.8517 0.7806 32 1 -1.0500 -0.0008 0.0001 33 1 2.7551 1.5864 -1.4523 34 1 5.2343 1.5718 -1.4387 35 1 6.0694 0.4207 -2.5218 36 1 6.7491 2.0059 -2.0527 37 1 7.7808 -1.3273 -3.1453 38 1 7.0224 -0.5858 -4.5740 39 1 9.3181 -0.1305 -5.4932 40 1 8.9865 -1.8693 -5.2796 41 1 11.2286 -1.2794 -4.4136 42 1 10.1582 -1.8310 -3.1070 43 1 11.2455 -0.0966 -1.1067 44 1 14.0389 -0.6053 0.6442 45 1 9.4556 0.8704 -0.3168 46 1 9.3265 -0.7474 -1.0616 47 1 5.0754 -1.5913 1.4640 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992862129.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:27 Heat of formation + Delta-G solvation = 82.483894 kcal Electronic energy + Delta-G solvation = -29191.148030 eV Core-core repulsion = 25340.957029 eV Total energy + Delta-G solvation = -3850.191001 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.17407 -40.11474 -38.42318 -35.73659 -34.29198 -34.01447 -33.10435 -31.67801 -31.24523 -30.51882 -28.87788 -26.93379 -25.92316 -24.23732 -23.80885 -23.47422 -21.68134 -21.01458 -20.09814 -19.77027 -18.46115 -17.64620 -17.00968 -16.63495 -16.51097 -16.08863 -15.62558 -15.17866 -14.70663 -14.62353 -14.48508 -14.07759 -13.93757 -13.74560 -13.48738 -13.31961 -13.02723 -12.84238 -12.68884 -12.41917 -11.98000 -11.85000 -11.66637 -11.36202 -11.26401 -11.06684 -10.98963 -10.88466 -10.81044 -10.34870 -10.28267 -10.24451 -10.19133 -9.92606 -9.70815 -9.67363 -9.55815 -9.20359 -8.86664 -8.56896 -6.97054 -5.75426 -3.05582 0.04756 0.83037 2.21325 2.24255 2.84342 2.99824 3.43956 3.48457 3.50041 3.50506 3.65829 4.16529 4.30514 4.36419 4.48635 4.55399 4.63362 4.66781 4.74292 4.85106 5.11689 5.19121 5.22908 5.32998 5.37538 5.38703 5.53341 5.55938 5.61849 5.65607 5.68565 5.70058 5.78526 5.89459 6.01722 6.08720 6.14867 6.19899 6.29670 6.35120 6.39276 6.44568 6.57902 6.70230 6.90033 7.00611 7.13573 7.41133 7.51108 7.69797 8.09198 8.42251 9.53242 10.08969 10.42907 11.46698 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020167 B = 0.002597 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.085995 B =10779.638228 C =11720.167310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.150 4.150 3 C 0.240 3.760 4 C -0.152 4.152 5 C -0.057 4.057 6 C -0.168 4.168 7 C 0.571 3.429 8 O -0.523 6.523 9 N -0.605 5.605 10 C 0.090 3.910 11 C -0.088 4.088 12 H 0.096 0.904 13 C -0.110 4.110 14 C -0.116 4.116 15 C -0.131 4.131 16 C 0.191 3.809 17 H 0.044 0.956 18 N -0.730 5.730 19 C -0.241 4.241 20 H 0.069 0.931 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.287 1.287 27 C -0.088 4.088 28 H 0.071 0.929 29 C 0.118 3.882 30 C 0.164 3.836 31 N -0.472 5.472 32 H 0.231 0.769 33 H 0.145 0.855 34 H 0.160 0.840 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.385 0.615 44 H 0.256 0.744 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.287 4.305 -7.295 25.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.151 4.151 3 C 0.105 3.895 4 C -0.172 4.172 5 C -0.083 4.083 6 C -0.173 4.173 7 C 0.358 3.642 8 O -0.399 6.399 9 N -0.338 5.338 10 C -0.033 4.033 11 C -0.107 4.107 12 H 0.115 0.885 13 C -0.147 4.147 14 C -0.155 4.155 15 C -0.171 4.171 16 C 0.081 3.919 17 H 0.062 0.938 18 N -0.372 5.372 19 C -0.373 4.373 20 H 0.087 0.913 21 C -0.208 4.208 22 N -0.578 5.578 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.108 4.108 28 H 0.090 0.910 29 C -0.003 4.003 30 C 0.005 3.995 31 N -0.180 5.180 32 H 0.247 0.753 33 H 0.163 0.837 34 H 0.177 0.823 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.221 0.779 44 H 0.066 0.934 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -24.245 3.494 -6.191 25.266 hybrid contribution 1.311 0.487 -0.384 1.450 sum -22.934 3.981 -6.574 24.187 Atomic orbital electron populations 1.24966 0.95638 0.97446 0.97304 1.19303 0.91053 1.02325 1.02401 1.16780 0.88206 0.91946 0.92543 1.21989 0.94403 1.00201 1.00593 1.22394 0.94335 0.96396 0.95140 1.21130 0.94862 1.00481 1.00851 1.17589 0.85681 0.78503 0.82418 1.90863 1.71626 1.46412 1.31040 1.48323 1.08581 1.60594 1.16302 1.22831 0.97785 0.97548 0.85095 1.22007 0.93695 0.98838 0.96206 0.88550 1.21521 0.98036 0.95934 0.99257 1.21431 0.95356 1.00686 0.97988 1.21885 0.96584 1.00476 0.98167 1.19060 0.87728 0.94028 0.91090 0.93819 1.42679 1.02450 1.86453 1.05662 1.19153 0.82975 1.41583 0.93549 0.91257 1.24751 0.97932 1.02713 0.95433 1.69652 1.33353 1.55539 0.99275 0.86294 0.85465 0.77752 0.76799 1.21327 1.21741 1.21328 1.21106 0.94750 1.01304 0.93635 0.91031 1.21915 0.77494 1.03020 0.97883 1.22974 0.87847 0.95037 0.93692 1.67862 1.09634 1.20989 1.19481 0.75267 0.83676 0.82325 0.90221 0.91137 0.91828 0.92397 0.92291 0.92643 0.92115 0.92429 0.77937 0.93380 0.90365 0.90213 0.80785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 19.25 29.55 0.57 -0.34 16 2 C -0.15 -1.45 13.43 -38.84 -0.52 -1.98 16 3 C 0.24 2.62 6.59 -84.91 -0.56 2.06 16 4 C -0.15 -1.29 9.77 -39.13 -0.38 -1.67 16 5 C -0.06 -0.52 8.11 -38.92 -0.32 -0.83 16 6 C -0.17 -2.04 5.75 -104.76 -0.60 -2.64 16 7 C 0.57 8.67 7.66 -12.41 -0.10 8.58 16 8 O -0.52 -10.12 16.95 5.31 0.09 -10.03 16 9 N -0.60 -8.37 3.31 -172.38 -0.57 -8.94 16 10 C 0.09 0.88 4.34 -2.64 -0.01 0.86 16 11 C -0.09 -0.94 3.40 -89.63 -0.30 -1.25 16 12 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 13 C -0.11 -1.22 4.89 -26.86 -0.13 -1.35 16 14 C -0.12 -1.45 5.94 -26.99 -0.16 -1.61 16 15 C -0.13 -2.20 5.30 -27.67 -0.15 -2.35 16 16 C 0.19 3.47 2.51 -70.33 -0.18 3.30 16 17 H 0.04 0.82 8.06 -51.93 -0.42 0.40 16 18 N -0.73 -17.46 4.91 -55.79 -0.27 -17.73 16 19 C -0.24 -6.51 9.80 -15.06 -0.15 -6.66 16 20 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16 23 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 C -0.09 -1.31 2.34 -92.12 -0.22 -1.52 16 28 H 0.07 1.07 8.12 -51.92 -0.42 0.64 16 29 C 0.12 1.98 4.85 -3.50 -0.02 1.97 16 30 C 0.16 2.04 10.75 -17.17 -0.18 1.86 16 31 N -0.47 -5.97 10.26 -10.79 -0.11 -6.08 16 32 H 0.23 0.54 7.80 -54.09 -0.42 0.11 16 33 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.16 1.08 4.36 -52.49 -0.23 0.85 16 35 H 0.08 0.64 6.07 -51.93 -0.32 0.33 16 36 H 0.07 0.54 7.05 -51.93 -0.37 0.17 16 37 H 0.06 0.82 7.94 -51.93 -0.41 0.41 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.39 9.88 5.70 -40.82 -0.23 9.65 16 44 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.08 1.49 8.02 -51.93 -0.42 1.07 16 46 H 0.08 1.55 7.41 -51.93 -0.39 1.17 16 47 H 0.18 2.08 7.85 -52.49 -0.41 1.67 16 LS Contribution 380.98 15.07 5.74 5.74 Total: -1.00 -33.85 380.98 -9.46 -43.31 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -6.54 Total: 7.86 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -3.50 Total: -4.01 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.23 Total: -60.13 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.85 -9.46 -43.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992862129.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.791 kcal (2) G-P(sol) polarization free energy of solvation -33.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds