Wall clock time and date at job start Tue Mar 31 2020 22:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39729 * 119.58847 * 212.53123 * 3 2 1 5 5 C 1.37971 * 119.19777 * 179.72095 * 4 3 2 6 6 C 1.40243 * 118.39979 * 0.54568 * 5 4 3 7 7 C 1.47675 * 120.43935 * 179.75455 * 6 5 4 8 8 O 1.21571 * 120.00186 * 187.17451 * 7 6 5 9 9 N 1.34774 * 119.99967 * 7.16803 * 7 6 5 10 10 C 1.47324 * 125.74377 * 354.46450 * 9 7 6 11 11 C 1.55128 * 106.87449 * 180.26271 * 10 9 7 12 12 H 1.09003 * 112.68497 * 215.33010 * 11 10 9 13 13 C 1.52933 * 107.21506 * 91.72209 * 11 10 9 14 14 C 1.52255 * 110.24121 * 191.98356 * 13 11 10 15 15 C 1.51837 * 110.42987 * 61.75608 * 14 13 11 16 16 C 1.49284 * 112.64130 * 306.91677 * 15 14 13 17 17 H 1.09002 * 107.22085 * 164.46160 * 16 15 14 18 18 N 1.46502 * 108.02358 * 280.41013 * 16 15 14 19 19 C 1.36928 * 120.00083 * 282.77233 * 18 16 15 20 20 H 1.08000 * 120.00495 * 359.97438 * 19 18 16 21 21 C 1.38811 * 120.00015 * 180.02562 * 19 18 16 22 22 N 1.31619 * 120.00019 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 120.00141 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47175 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47044 * 119.99795 * 23 21 19 26 26 H 1.48497 * 109.46857 * 239.99526 * 23 21 19 27 27 C 1.49686 * 117.21127 * 42.76190 * 16 15 14 28 28 H 1.09002 * 109.18166 * 197.47947 * 27 16 15 29 29 C 1.47818 * 125.73910 * 174.76607 * 9 7 6 30 30 C 1.39655 * 119.11987 * 359.47888 * 6 5 4 31 31 N 1.31478 * 120.70952 * 0.25381 * 30 6 5 32 32 H 4.51262 * 14.17525 * 0.02562 * 4 2 1 33 33 H 1.08000 * 120.40004 * 0.02562 * 4 3 2 34 34 H 1.08002 * 120.80276 * 180.27256 * 5 4 3 35 35 H 1.09004 * 109.97355 * 299.61764 * 10 9 7 36 36 H 1.08995 * 109.98124 * 60.90701 * 10 9 7 37 37 H 1.08998 * 109.34177 * 312.22320 * 13 11 10 38 38 H 1.09005 * 109.33778 * 71.75269 * 13 11 10 39 39 H 1.09002 * 109.30685 * 182.04606 * 14 13 11 40 40 H 1.08998 * 109.31256 * 301.45193 * 14 13 11 41 41 H 1.08988 * 108.78767 * 67.72825 * 15 14 13 42 42 H 1.08997 * 108.77851 * 185.93622 * 15 14 13 43 43 H 0.97005 * 119.99343 * 102.76710 * 18 16 15 44 44 H 0.97006 * 120.00111 * 179.97438 * 22 21 19 45 45 H 1.08997 * 110.51678 * 322.75037 * 29 9 7 46 46 H 1.08996 * 110.51283 * 85.32984 * 29 9 7 47 47 H 1.08000 * 119.64498 * 180.23322 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2955 1.0254 0.6534 5 6 4.6752 1.0149 0.6533 6 6 5.3343 -0.0254 -0.0176 7 6 6.8097 -0.0778 -0.0508 8 8 7.3732 -0.9051 -0.7407 9 7 7.5316 0.7917 0.6836 10 6 6.9881 1.9130 1.4695 11 6 8.1964 2.6266 2.1310 12 1 7.9656 3.0099 3.1249 13 6 8.6424 3.7376 1.1793 14 6 9.9942 4.2895 1.6107 15 6 11.0523 3.2018 1.5573 16 6 10.6598 1.9804 2.3207 17 1 11.3230 1.1752 2.0043 18 7 10.9096 2.2343 3.7418 19 6 12.1862 2.1772 4.2335 20 1 13.0091 1.9446 3.5738 21 6 12.4227 2.4172 5.5800 22 7 11.4199 2.7002 6.3841 23 14 14.1644 2.3386 6.2510 24 1 15.1040 2.0036 5.1510 25 1 14.5309 3.6553 6.8320 26 1 14.2426 1.2941 7.3036 27 6 9.2480 1.5055 2.1736 28 1 9.0118 0.8253 2.9920 29 6 9.0024 0.7844 0.8309 30 6 4.5768 -1.0144 -0.6488 31 7 3.2629 -0.9733 -0.6221 32 1 -1.0500 -0.0010 -0.0001 33 1 2.7550 1.8134 1.1567 34 1 5.2342 1.7916 1.1540 35 1 6.4597 2.6055 0.8142 36 1 6.3120 1.5367 2.2371 37 1 8.7217 3.3370 0.1687 38 1 7.9046 4.5400 1.1903 39 1 10.2802 5.1036 0.9447 40 1 9.9197 4.6704 2.6293 41 1 11.2217 2.9277 0.5162 42 1 11.9812 3.5954 1.9700 43 1 10.1704 2.4429 4.3343 44 1 11.5851 2.8676 7.3252 45 1 9.3771 -0.2382 0.8724 46 1 9.4710 1.3289 0.0112 47 1 5.0756 -1.8216 -1.1646 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992862131.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:30 Heat of formation + Delta-G solvation = 93.172463 kcal Electronic energy + Delta-G solvation = -28970.884965 eV Core-core repulsion = 25121.157455 eV Total energy + Delta-G solvation = -3849.727510 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.26997 -40.15188 -38.55873 -35.98876 -34.33371 -33.69712 -33.11629 -31.64023 -31.27703 -30.52545 -29.31670 -26.96646 -25.99933 -24.34428 -23.88236 -22.95274 -22.14775 -21.30875 -20.16341 -19.75968 -18.22304 -17.38264 -17.17510 -16.74533 -16.52768 -16.12245 -15.70081 -15.18241 -14.65420 -14.62858 -14.52089 -14.27403 -14.05294 -13.76355 -13.54321 -13.44637 -13.14215 -12.94102 -12.61870 -12.41580 -11.97283 -11.74042 -11.65258 -11.40884 -11.27901 -11.15857 -10.97140 -10.88203 -10.76625 -10.37972 -10.34923 -10.18035 -10.10375 -9.92161 -9.74470 -9.66426 -9.56354 -9.25379 -8.89875 -8.74300 -6.97961 -5.80175 -3.08073 -0.01689 0.81900 2.17346 2.20256 2.73240 2.93577 3.40626 3.47189 3.48456 3.48677 3.64844 4.09715 4.29683 4.35058 4.47443 4.53416 4.61409 4.63042 4.77961 4.83677 5.09438 5.15992 5.19212 5.28432 5.35348 5.43885 5.53984 5.56721 5.62051 5.63385 5.67924 5.71944 5.77561 5.85449 5.91640 6.00675 6.13453 6.16066 6.24366 6.30354 6.34012 6.45047 6.74116 6.76388 6.94412 6.99387 7.12463 7.30010 7.44522 7.67982 7.93395 8.38529 9.50384 10.06881 10.42254 11.42524 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019542 B = 0.002358 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.483791 B =11871.875196 C =12065.405165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.152 4.152 3 C 0.242 3.758 4 C -0.152 4.152 5 C -0.075 4.075 6 C -0.174 4.174 7 C 0.576 3.424 8 O -0.534 6.534 9 N -0.607 5.607 10 C 0.087 3.913 11 C -0.090 4.090 12 H 0.103 0.897 13 C -0.110 4.110 14 C -0.110 4.110 15 C -0.126 4.126 16 C 0.188 3.812 17 H 0.040 0.960 18 N -0.726 5.726 19 C -0.234 4.234 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.903 3.097 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.292 1.292 27 C -0.089 4.089 28 H 0.086 0.914 29 C 0.115 3.885 30 C 0.166 3.834 31 N -0.474 5.474 32 H 0.231 0.769 33 H 0.146 0.854 34 H 0.178 0.822 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.068 0.932 41 H 0.037 0.963 42 H 0.073 0.927 43 H 0.382 0.618 44 H 0.254 0.746 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.506 0.511 -12.650 22.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.153 4.153 3 C 0.108 3.892 4 C -0.172 4.172 5 C -0.100 4.100 6 C -0.179 4.179 7 C 0.365 3.635 8 O -0.412 6.412 9 N -0.340 5.340 10 C -0.036 4.036 11 C -0.109 4.109 12 H 0.121 0.879 13 C -0.147 4.147 14 C -0.147 4.147 15 C -0.166 4.166 16 C 0.078 3.922 17 H 0.058 0.942 18 N -0.368 5.368 19 C -0.366 4.366 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.735 3.265 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.108 4.108 28 H 0.104 0.896 29 C -0.007 4.007 30 C 0.006 3.994 31 N -0.182 5.182 32 H 0.248 0.752 33 H 0.164 0.836 34 H 0.194 0.806 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.056 0.944 42 H 0.092 0.908 43 H 0.216 0.784 44 H 0.063 0.937 45 H 0.099 0.901 46 H 0.092 0.908 47 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -18.487 -0.683 -13.461 22.879 hybrid contribution 0.977 0.737 1.140 1.672 sum -17.510 0.054 -12.321 21.411 Atomic orbital electron populations 1.24978 0.95647 0.97600 0.96919 1.19305 0.91062 1.02266 1.02620 1.16825 0.88224 0.90874 0.93303 1.22058 0.94558 0.99640 1.00922 1.23218 0.94760 0.97839 0.94206 1.21080 0.94650 0.98867 1.03338 1.17583 0.85781 0.80658 0.79500 1.90804 1.72070 1.37628 1.40722 1.48492 1.08620 1.29405 1.47446 1.22960 0.97603 0.88310 0.94689 1.22205 0.93264 0.95598 0.99813 0.87868 1.21454 0.97872 0.97034 0.98383 1.20989 0.94130 0.97817 1.01774 1.21209 0.99660 0.97226 0.98516 1.18605 0.91414 0.94899 0.87259 0.94178 1.42551 1.06838 1.84757 1.02676 1.19250 0.85468 1.39604 0.92241 0.91184 1.24703 0.97135 1.02791 0.96318 1.69660 1.29339 1.54866 1.04285 0.86169 0.84395 0.77139 0.78809 1.20601 1.21975 1.21967 1.21567 0.96229 0.96588 0.96463 0.89558 1.22390 0.78521 1.01775 0.98022 1.22981 0.87864 0.96103 0.92474 1.67868 1.09635 1.23553 1.17155 0.75236 0.83605 0.80571 0.90338 0.90425 0.92334 0.92341 0.93158 0.91353 0.94381 0.90849 0.78429 0.93650 0.90096 0.90826 0.80747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.90 19.25 29.55 0.57 -0.33 16 2 C -0.15 -1.47 13.43 -38.84 -0.52 -2.00 16 3 C 0.24 2.63 6.59 -84.91 -0.56 2.07 16 4 C -0.15 -1.32 9.77 -39.12 -0.38 -1.70 16 5 C -0.08 -0.68 8.69 -38.93 -0.34 -1.02 16 6 C -0.17 -1.99 5.89 -104.76 -0.62 -2.61 16 7 C 0.58 7.80 7.81 -12.41 -0.10 7.71 16 8 O -0.53 -8.88 16.70 5.30 0.09 -8.79 16 9 N -0.61 -7.47 3.34 -172.08 -0.57 -8.04 16 10 C 0.09 0.84 4.26 -2.47 -0.01 0.83 16 11 C -0.09 -1.06 3.50 -89.13 -0.31 -1.37 16 12 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 13 C -0.11 -1.25 4.72 -27.15 -0.13 -1.38 16 14 C -0.11 -1.54 5.89 -27.70 -0.16 -1.71 16 15 C -0.13 -2.05 5.34 -29.15 -0.16 -2.21 16 16 C 0.19 3.32 2.24 -71.40 -0.16 3.16 16 17 H 0.04 0.76 7.96 -51.93 -0.41 0.35 16 18 N -0.73 -16.50 4.99 -56.84 -0.28 -16.78 16 19 C -0.23 -6.13 9.33 -15.06 -0.14 -6.27 16 20 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -26.98 13.06 55.49 0.72 -26.26 16 23 Si 0.90 21.82 29.55 -169.99 -5.02 16.80 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 C -0.09 -1.29 2.23 -91.14 -0.20 -1.49 16 28 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 29 C 0.11 1.55 5.82 -2.60 -0.02 1.53 16 30 C 0.17 1.95 10.75 -17.17 -0.18 1.76 16 31 N -0.47 -5.83 10.26 -10.78 -0.11 -5.94 16 32 H 0.23 0.55 7.80 -54.09 -0.42 0.13 16 33 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.18 1.24 2.90 -53.94 -0.16 1.09 16 35 H 0.08 0.60 6.41 -51.93 -0.33 0.27 16 36 H 0.08 0.66 6.71 -51.93 -0.35 0.31 16 37 H 0.06 0.66 7.00 -51.93 -0.36 0.30 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.04 0.55 8.14 -51.94 -0.42 0.13 16 42 H 0.07 1.39 7.53 -51.93 -0.39 1.00 16 43 H 0.38 9.23 7.73 -40.82 -0.32 8.91 16 44 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.08 1.17 8.11 -51.93 -0.42 0.75 16 46 H 0.07 0.97 7.44 -51.93 -0.39 0.58 16 47 H 0.18 1.91 7.67 -52.49 -0.40 1.51 16 LS Contribution 380.49 15.07 5.73 5.73 Total: -1.00 -32.17 380.49 -9.42 -41.59 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -6.45 Total: 7.18 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -3.52 Total: -5.49 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: -0.24 Total: -57.02 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.09 Total: -8.79 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.17 -9.42 -41.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992862131.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.764 kcal (2) G-P(sol) polarization free energy of solvation -32.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds