Wall clock time and date at job start Tue Mar 31 2020 22:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39729 * 119.58847 * 212.53123 * 3 2 1 5 5 C 1.37971 * 119.19777 * 179.72095 * 4 3 2 6 6 C 1.40243 * 118.39979 * 0.54568 * 5 4 3 7 7 C 1.47675 * 120.43935 * 179.75455 * 6 5 4 8 8 O 1.21571 * 120.00186 * 187.17451 * 7 6 5 9 9 N 1.34774 * 119.99967 * 7.16803 * 7 6 5 10 10 C 1.47324 * 125.74377 * 354.46450 * 9 7 6 11 11 C 1.55128 * 106.87449 * 180.26271 * 10 9 7 12 12 H 1.09003 * 112.68497 * 215.33010 * 11 10 9 13 13 C 1.52933 * 107.21506 * 91.72209 * 11 10 9 14 14 C 1.52255 * 110.24121 * 191.98356 * 13 11 10 15 15 C 1.51837 * 110.42987 * 61.75608 * 14 13 11 16 16 C 1.49284 * 112.64130 * 306.91677 * 15 14 13 17 17 H 1.09002 * 107.22085 * 164.46160 * 16 15 14 18 18 N 1.46502 * 108.02358 * 280.41013 * 16 15 14 19 19 C 1.36928 * 120.00083 * 282.77233 * 18 16 15 20 20 H 1.08000 * 120.00495 * 359.97438 * 19 18 16 21 21 C 1.38811 * 120.00015 * 180.02562 * 19 18 16 22 22 N 1.31619 * 120.00019 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 120.00141 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47175 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47044 * 119.99795 * 23 21 19 26 26 H 1.48497 * 109.46857 * 239.99526 * 23 21 19 27 27 C 1.49686 * 117.21127 * 42.76190 * 16 15 14 28 28 H 1.09002 * 109.18166 * 197.47947 * 27 16 15 29 29 C 1.47818 * 125.73910 * 174.76607 * 9 7 6 30 30 C 1.39655 * 119.11987 * 359.47888 * 6 5 4 31 31 N 1.31478 * 120.70952 * 0.25381 * 30 6 5 32 32 H 4.51262 * 14.17525 * 0.02562 * 4 2 1 33 33 H 1.08000 * 120.40004 * 0.02562 * 4 3 2 34 34 H 1.08002 * 120.80276 * 180.27256 * 5 4 3 35 35 H 1.09004 * 109.97355 * 299.61764 * 10 9 7 36 36 H 1.08995 * 109.98124 * 60.90701 * 10 9 7 37 37 H 1.08998 * 109.34177 * 312.22320 * 13 11 10 38 38 H 1.09005 * 109.33778 * 71.75269 * 13 11 10 39 39 H 1.09002 * 109.30685 * 182.04606 * 14 13 11 40 40 H 1.08998 * 109.31256 * 301.45193 * 14 13 11 41 41 H 1.08988 * 108.78767 * 67.72825 * 15 14 13 42 42 H 1.08997 * 108.77851 * 185.93622 * 15 14 13 43 43 H 0.97005 * 119.99343 * 102.76710 * 18 16 15 44 44 H 0.97006 * 120.00111 * 179.97438 * 22 21 19 45 45 H 1.08997 * 110.51678 * 322.75037 * 29 9 7 46 46 H 1.08996 * 110.51283 * 85.32984 * 29 9 7 47 47 H 1.08000 * 119.64498 * 180.23322 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2955 1.0254 0.6534 5 6 4.6752 1.0149 0.6533 6 6 5.3343 -0.0254 -0.0176 7 6 6.8097 -0.0778 -0.0508 8 8 7.3732 -0.9051 -0.7407 9 7 7.5316 0.7917 0.6836 10 6 6.9881 1.9130 1.4695 11 6 8.1964 2.6266 2.1310 12 1 7.9656 3.0099 3.1249 13 6 8.6424 3.7376 1.1793 14 6 9.9942 4.2895 1.6107 15 6 11.0523 3.2018 1.5573 16 6 10.6598 1.9804 2.3207 17 1 11.3230 1.1752 2.0043 18 7 10.9096 2.2343 3.7418 19 6 12.1862 2.1772 4.2335 20 1 13.0091 1.9446 3.5738 21 6 12.4227 2.4172 5.5800 22 7 11.4199 2.7002 6.3841 23 14 14.1644 2.3386 6.2510 24 1 15.1040 2.0036 5.1510 25 1 14.5309 3.6553 6.8320 26 1 14.2426 1.2941 7.3036 27 6 9.2480 1.5055 2.1736 28 1 9.0118 0.8253 2.9920 29 6 9.0024 0.7844 0.8309 30 6 4.5768 -1.0144 -0.6488 31 7 3.2629 -0.9733 -0.6221 32 1 -1.0500 -0.0010 -0.0001 33 1 2.7550 1.8134 1.1567 34 1 5.2342 1.7916 1.1540 35 1 6.4597 2.6055 0.8142 36 1 6.3120 1.5367 2.2371 37 1 8.7217 3.3370 0.1687 38 1 7.9046 4.5400 1.1903 39 1 10.2802 5.1036 0.9447 40 1 9.9197 4.6704 2.6293 41 1 11.2217 2.9277 0.5162 42 1 11.9812 3.5954 1.9700 43 1 10.1704 2.4429 4.3343 44 1 11.5851 2.8676 7.3252 45 1 9.3771 -0.2382 0.8724 46 1 9.4710 1.3289 0.0112 47 1 5.0756 -1.8216 -1.1646 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992862131.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:30 Heat of formation + Delta-G solvation = 73.326698 kcal Electronic energy + Delta-G solvation = -28971.745542 eV Core-core repulsion = 25121.157455 eV Total energy + Delta-G solvation = -3850.588087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.21650 -41.09969 -39.65652 -37.29042 -35.32128 -34.93730 -33.94174 -33.23890 -32.16336 -31.48419 -30.77587 -28.20576 -26.99448 -25.74562 -24.76295 -24.26277 -23.30575 -22.45138 -21.13370 -20.42030 -19.39805 -19.15571 -18.33042 -17.67614 -17.24561 -17.20369 -16.70705 -16.41493 -16.17673 -15.59018 -15.39108 -15.36243 -15.21832 -15.07013 -14.91063 -14.53423 -14.23584 -14.10445 -13.67044 -13.52894 -13.23607 -13.04258 -12.86270 -12.65801 -12.59674 -12.32909 -12.23173 -12.08994 -11.93737 -11.87565 -11.77635 -11.38731 -11.23439 -11.18647 -11.08928 -10.87857 -10.68359 -10.56804 -10.04675 -9.70812 -8.92889 -7.90643 -5.16033 -0.78552 0.09061 1.37222 1.46936 1.48451 1.56839 1.61051 1.74391 2.10920 2.57819 2.88313 2.90155 3.23016 3.39074 3.43405 3.52801 3.61446 3.71947 3.81273 3.90069 4.02039 4.11854 4.19333 4.22262 4.34709 4.37698 4.53844 4.56369 4.60239 4.62250 4.69448 4.73733 4.81889 4.83145 4.86748 4.94012 5.00304 5.09920 5.14093 5.16871 5.30084 5.43582 5.44845 5.53427 5.54948 5.70529 5.75965 6.31648 6.33961 6.44329 6.66595 6.91414 7.39845 8.16488 8.40654 9.32728 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019542 B = 0.002358 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.483791 B =11871.875196 C =12065.405165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.218 4.218 3 C 0.231 3.769 4 C -0.144 4.144 5 C -0.062 4.062 6 C -0.187 4.187 7 C 0.576 3.424 8 O -0.576 6.576 9 N -0.604 5.604 10 C 0.087 3.913 11 C -0.086 4.086 12 H 0.101 0.899 13 C -0.103 4.103 14 C -0.106 4.106 15 C -0.122 4.122 16 C 0.190 3.810 17 H 0.022 0.978 18 N -0.733 5.733 19 C -0.228 4.228 20 H 0.070 0.930 21 C -0.074 4.074 22 N -0.966 5.966 23 Si 0.961 3.039 24 H -0.270 1.270 25 H -0.295 1.295 26 H -0.298 1.298 27 C -0.084 4.084 28 H 0.064 0.936 29 C 0.122 3.878 30 C 0.156 3.844 31 N -0.502 5.502 32 H 0.272 0.728 33 H 0.179 0.821 34 H 0.201 0.799 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.042 0.958 41 H 0.060 0.940 42 H 0.040 0.960 43 H 0.374 0.626 44 H 0.248 0.752 45 H 0.063 0.937 46 H 0.082 0.918 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.099 2.150 -13.544 25.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.219 4.219 3 C 0.097 3.903 4 C -0.163 4.163 5 C -0.087 4.087 6 C -0.193 4.193 7 C 0.366 3.634 8 O -0.457 6.457 9 N -0.336 5.336 10 C -0.034 4.034 11 C -0.105 4.105 12 H 0.119 0.881 13 C -0.140 4.140 14 C -0.143 4.143 15 C -0.162 4.162 16 C 0.082 3.918 17 H 0.040 0.960 18 N -0.374 5.374 19 C -0.360 4.360 20 H 0.088 0.912 21 C -0.266 4.266 22 N -0.617 5.617 23 Si 0.792 3.208 24 H -0.195 1.195 25 H -0.223 1.223 26 H -0.225 1.225 27 C -0.104 4.104 28 H 0.083 0.917 29 C -0.001 4.001 30 C -0.004 4.004 31 N -0.210 5.210 32 H 0.288 0.712 33 H 0.197 0.803 34 H 0.217 0.783 35 H 0.132 0.868 36 H 0.115 0.885 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.206 0.794 44 H 0.057 0.943 45 H 0.081 0.919 46 H 0.100 0.900 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -21.081 0.969 -14.389 25.542 hybrid contribution 1.673 0.192 1.357 2.163 sum -19.408 1.161 -13.032 23.406 Atomic orbital electron populations 1.25996 0.96332 0.94470 0.93632 1.19661 0.91613 1.05134 1.05465 1.17266 0.89276 0.90888 0.92865 1.22397 0.94374 0.99591 0.99982 1.23439 0.95022 0.97163 0.93046 1.20896 0.93169 1.00179 1.05018 1.17885 0.86613 0.80025 0.78891 1.90777 1.72981 1.39307 1.42633 1.48478 1.07951 1.29883 1.47299 1.23182 0.96912 0.87862 0.95446 1.22172 0.93019 0.94946 1.00324 0.88114 1.21440 0.96758 0.97563 0.98256 1.20944 0.95135 0.97426 1.00808 1.21067 0.99074 0.97002 0.99049 1.18780 0.93262 0.95064 0.84670 0.96033 1.42695 1.05458 1.84563 1.04695 1.19551 0.86830 1.37359 0.92244 0.91248 1.25377 1.00301 1.04058 0.96894 1.69788 1.30892 1.56924 1.04107 0.85240 0.80966 0.76531 0.78069 1.19494 1.22260 1.22519 1.21311 0.95107 0.97595 0.96340 0.91728 1.22189 0.79745 1.00708 0.97433 1.22935 0.88064 0.96456 0.92965 1.67849 1.09723 1.24958 1.18512 0.71208 0.80337 0.78260 0.86798 0.88515 0.91428 0.89231 0.91430 0.93955 0.92188 0.94118 0.79386 0.94273 0.91859 0.90014 0.81416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.88 19.25 74.32 1.43 0.55 16 2 C -0.22 -3.80 13.43 30.02 0.40 -3.40 16 3 C 0.23 4.72 6.59 40.58 0.27 4.99 16 4 C -0.14 -2.08 9.77 22.57 0.22 -1.86 16 5 C -0.06 -0.94 8.69 22.69 0.20 -0.74 16 6 C -0.19 -4.10 5.89 -19.96 -0.12 -4.22 16 7 C 0.58 15.29 7.81 86.74 0.68 15.97 16 8 O -0.58 -19.63 16.70 -3.94 -0.07 -19.70 16 9 N -0.60 -13.92 3.34 -816.60 -2.73 -16.65 16 10 C 0.09 1.38 4.26 86.95 0.37 1.75 16 11 C -0.09 -1.83 3.50 -9.83 -0.03 -1.86 16 12 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 13 C -0.10 -1.99 4.72 30.33 0.14 -1.84 16 14 C -0.11 -2.79 5.89 29.97 0.18 -2.61 16 15 C -0.12 -3.92 5.34 29.03 0.16 -3.77 16 16 C 0.19 6.82 2.24 42.74 0.10 6.92 16 17 H 0.02 0.85 7.96 -2.39 -0.02 0.83 16 18 N -0.73 -34.16 4.99 -333.76 -1.67 -35.82 16 19 C -0.23 -12.15 9.33 84.03 0.78 -11.37 16 20 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 21 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 22 N -0.97 -57.13 13.06 21.65 0.28 -56.85 16 23 Si 0.96 45.66 29.55 68.60 2.03 47.69 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 25 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 26 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 27 C -0.08 -2.40 2.23 -11.13 -0.02 -2.43 16 28 H 0.06 2.15 8.07 -2.39 -0.02 2.13 16 29 C 0.12 3.22 5.82 86.59 0.50 3.73 16 30 C 0.16 3.73 10.75 85.09 0.91 4.64 16 31 N -0.50 -12.36 10.26 -188.03 -1.93 -14.29 16 32 H 0.27 -0.06 7.80 -4.42 -0.03 -0.09 16 33 H 0.18 1.34 8.06 -2.91 -0.02 1.31 16 34 H 0.20 1.90 2.90 -4.28 -0.01 1.88 16 35 H 0.11 1.12 6.41 -2.39 -0.02 1.10 16 36 H 0.10 1.26 6.71 -2.39 -0.02 1.24 16 37 H 0.07 1.24 7.00 -2.39 -0.02 1.23 16 38 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.04 1.56 7.53 -2.39 -0.02 1.54 16 43 H 0.37 18.56 7.73 -92.70 -0.72 17.84 16 44 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 45 H 0.06 1.89 8.11 -2.39 -0.02 1.87 16 46 H 0.08 2.04 7.44 -2.39 -0.02 2.02 16 47 H 0.17 4.00 7.67 -2.91 -0.02 3.97 16 Total: -1.00 -73.95 380.49 2.83 -71.12 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.28 Total: 23.71 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 6.63 Total: 0.78 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -6.04 Total: -123.61 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.07 Total: -19.70 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -73.95 2.83 -71.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992862131.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.445 kcal (2) G-P(sol) polarization free energy of solvation -73.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds