Wall clock time and date at job start Tue Mar 31 2020 22:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39990 * 120.46213 * 313.71140 * 3 2 1 5 5 C 1.38219 * 118.36680 * 179.75685 * 4 3 2 6 6 C 1.39491 * 119.20656 * 0.50670 * 5 4 3 7 7 C 1.47987 * 119.57043 * 179.75483 * 6 5 4 8 8 O 1.21548 * 119.99878 * 359.72774 * 7 6 5 9 9 N 1.34772 * 120.00392 * 179.72589 * 7 6 5 10 10 C 1.46499 * 120.00331 * 179.97438 * 9 7 6 11 11 C 1.53003 * 115.55073 * 180.02562 * 10 9 7 12 12 C 1.53036 * 109.45910 * 34.41963 * 11 10 9 13 13 C 1.53189 * 109.31589 * 178.61253 * 12 11 10 14 14 N 1.46927 * 108.77499 * 54.63666 * 13 12 11 15 15 C 1.36932 * 120.63177 * 126.41632 * 14 13 12 16 16 H 1.08004 * 120.00038 * 207.66728 * 15 14 13 17 17 C 1.38814 * 119.99982 * 27.66313 * 15 14 13 18 18 N 1.31612 * 120.00200 * 17.37133 * 17 15 14 19 19 Si 1.86798 * 119.99944 * 197.36766 * 17 15 14 20 20 H 1.48503 * 109.47280 * 59.99851 * 19 17 15 21 21 H 1.48501 * 109.47190 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47276 * 300.00228 * 19 17 15 23 23 C 1.46931 * 118.73618 * 306.39418 * 14 13 12 24 24 C 1.53039 * 109.46243 * 274.35322 * 11 10 9 25 25 C 1.52996 * 117.50349 * 325.67626 * 10 9 7 26 26 C 1.52999 * 117.49657 * 34.33988 * 10 9 7 27 27 N 1.32818 * 120.86002 * 359.47829 * 6 5 4 28 28 C 1.31294 * 121.78900 * 0.27442 * 27 6 5 29 29 H 4.52936 * 13.94738 * 0.02562 * 4 2 1 30 30 H 1.07998 * 120.81688 * 0.02562 * 4 3 2 31 31 H 1.07996 * 120.39467 * 180.26225 * 5 4 3 32 32 H 0.97000 * 119.99837 * 0.02562 * 9 7 6 33 33 H 1.09001 * 109.44702 * 154.38562 * 11 10 9 34 34 H 1.09004 * 109.50401 * 298.56806 * 12 11 10 35 35 H 1.09006 * 109.49890 * 58.66605 * 12 11 10 36 36 H 1.08996 * 109.59205 * 174.42339 * 13 12 11 37 37 H 1.09002 * 109.58857 * 294.85472 * 13 12 11 38 38 H 0.96996 * 120.00390 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.58954 * 293.81785 * 23 14 13 40 40 H 1.08999 * 109.58319 * 173.39833 * 23 14 13 41 41 H 1.08998 * 109.49975 * 301.34028 * 24 11 10 42 42 H 1.09001 * 109.49731 * 61.39982 * 24 11 10 43 43 H 1.09000 * 117.50041 * 215.00243 * 25 10 9 44 44 H 1.09002 * 117.49448 * 0.02562 * 25 10 9 45 45 H 1.09000 * 117.50000 * 359.97060 * 26 10 9 46 46 H 1.08996 * 117.50158 * 144.97575 * 26 10 9 47 47 H 1.08005 * 119.64927 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3161 -0.8329 0.8722 5 6 4.6973 -0.8011 0.8321 6 6 5.3327 0.0614 -0.0614 7 6 6.8112 0.1059 -0.1072 8 8 7.4638 -0.6025 0.6342 9 7 7.4341 0.9319 -0.9710 10 6 8.8977 0.9764 -1.0159 11 6 9.4974 1.9496 -2.0329 12 6 8.6015 3.1852 -2.1458 13 6 9.2228 4.1725 -3.1387 14 7 9.4564 3.4783 -4.4124 15 6 8.9630 3.9860 -5.5844 16 1 8.7319 3.3231 -6.4052 17 6 8.7596 5.3527 -5.7177 18 7 9.3411 6.1889 -4.8842 19 14 7.6609 6.0050 -7.0803 20 1 6.2918 5.4526 -6.9194 21 1 7.6088 7.4873 -7.0074 22 1 8.2088 5.5936 -8.3978 23 6 10.2301 2.2292 -4.4045 24 6 9.5975 1.2638 -3.3973 25 6 9.6514 0.7776 0.3006 26 6 9.6524 -0.3291 -0.7570 27 7 4.6280 0.8391 -0.8753 28 6 3.3151 0.8347 -0.8714 29 1 -1.0499 -0.0009 0.0002 30 1 2.7974 -1.4879 1.5565 31 1 5.2777 -1.4335 1.4875 32 1 6.9133 1.4975 -1.5624 33 1 10.4920 2.2509 -1.7040 34 1 7.6139 2.8877 -2.4982 35 1 8.5118 3.6600 -1.1686 36 1 8.5415 5.0083 -3.2978 37 1 10.1699 4.5405 -2.7441 38 1 9.1993 7.1439 -4.9775 39 1 11.2594 2.4387 -4.1131 40 1 10.2134 1.7829 -5.3988 41 1 10.2166 0.3708 -3.3111 42 1 8.6006 0.9838 -3.7378 43 1 10.5744 1.3399 0.4420 44 1 9.0582 0.6132 1.2002 45 1 9.0599 -1.2209 -0.5528 46 1 10.5759 -0.4950 -1.3116 47 1 2.7766 1.4812 -1.5486 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000314701.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:01 Heat of formation + Delta-G solvation = 107.906572 kcal Electronic energy + Delta-G solvation = -28919.794807 eV Core-core repulsion = 25070.706215 eV Total energy + Delta-G solvation = -3849.088591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.04649 -39.90626 -37.91411 -35.97300 -34.79516 -33.07653 -32.72664 -32.48944 -30.83536 -30.39487 -29.59928 -25.83582 -25.29058 -23.97728 -22.90866 -22.51884 -21.74573 -21.30408 -19.77709 -19.52695 -18.81005 -18.39059 -16.99422 -16.75717 -16.05146 -15.58318 -15.29716 -15.25763 -14.80026 -14.43543 -14.02338 -13.97320 -13.70222 -13.62887 -13.46403 -13.34217 -12.98771 -12.83514 -12.65980 -12.27863 -12.02137 -11.47654 -11.31162 -11.17309 -11.08289 -10.98502 -10.70392 -10.68932 -10.37311 -10.22476 -10.21125 -10.21081 -10.10093 -9.86063 -9.72692 -9.50672 -9.29636 -9.18632 -8.47383 -8.38171 -6.64220 -5.76143 -3.17681 -0.01809 0.82774 2.18228 2.22932 2.93248 2.97870 3.40090 3.45851 3.47262 3.63704 3.65329 3.92521 4.14859 4.36656 4.44576 4.52302 4.67385 4.81022 4.87637 5.06149 5.22759 5.30414 5.37768 5.39348 5.46290 5.56901 5.66565 5.69517 5.73569 5.79087 5.92417 6.02957 6.13185 6.14354 6.19303 6.35546 6.48133 6.54037 6.60132 6.64177 6.74705 6.77617 6.85836 6.99719 7.03540 7.30347 7.38948 7.62903 7.68404 7.82082 8.14577 8.48032 9.24448 9.88251 10.45020 11.32374 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009685 B = 0.003222 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.489028 B = 8689.316887 C =11073.467046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.156 4.156 3 C -0.022 4.022 4 C -0.061 4.061 5 C -0.110 4.110 6 C 0.089 3.911 7 C 0.566 3.434 8 O -0.533 6.533 9 N -0.664 5.664 10 C 0.105 3.895 11 C -0.041 4.041 12 C -0.135 4.135 13 C 0.172 3.828 14 N -0.592 5.592 15 C -0.251 4.251 16 H 0.064 0.936 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.901 3.099 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.283 1.283 23 C 0.145 3.855 24 C -0.125 4.125 25 C -0.178 4.178 26 C -0.176 4.176 27 N -0.451 5.451 28 C 0.128 3.872 29 H 0.228 0.772 30 H 0.146 0.854 31 H 0.155 0.845 32 H 0.419 0.581 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.088 0.912 37 H 0.018 0.982 38 H 0.254 0.746 39 H 0.017 0.983 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.093 0.907 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.094 0.906 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.075 -13.762 12.800 22.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.157 4.157 3 C -0.024 4.024 4 C -0.086 4.086 5 C -0.131 4.131 6 C -0.049 4.049 7 C 0.351 3.649 8 O -0.410 6.410 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.060 4.060 12 C -0.174 4.174 13 C 0.046 3.954 14 N -0.315 5.315 15 C -0.381 4.381 16 H 0.082 0.918 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.731 3.269 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.210 1.210 23 C 0.018 3.982 24 C -0.164 4.164 25 C -0.217 4.217 26 C -0.214 4.214 27 N -0.161 5.161 28 C -0.033 4.033 29 H 0.245 0.755 30 H 0.164 0.836 31 H 0.172 0.828 32 H 0.258 0.742 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.036 0.964 38 H 0.064 0.936 39 H 0.035 0.965 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.111 0.889 44 H 0.123 0.877 45 H 0.123 0.877 46 H 0.112 0.888 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -11.094 -13.498 12.704 21.603 hybrid contribution -1.592 0.118 -0.346 1.633 sum -12.685 -13.380 12.359 22.197 Atomic orbital electron populations 1.24974 0.95756 0.98121 0.98131 1.19653 0.91559 1.02248 1.02251 1.17172 0.88096 0.98718 0.98406 1.21666 0.93496 0.96682 0.96769 1.22040 0.94429 0.98245 0.98357 1.21383 0.94595 0.94657 0.94257 1.17818 0.85610 0.80563 0.80902 1.90747 1.65241 1.42868 1.42166 1.45324 1.06261 1.41269 1.38490 1.21033 0.78334 0.99788 0.99030 1.20780 0.98968 0.93464 0.92831 1.22221 0.98717 0.96504 0.99997 1.20766 0.98062 0.93159 0.83415 1.44051 1.60242 1.23701 1.03467 1.19143 1.36048 0.90029 0.92858 0.91798 1.25016 1.00050 0.96233 0.98356 1.70018 1.43477 1.01863 1.39425 0.86391 0.81051 0.77600 0.81858 1.21048 1.21681 1.20955 1.20909 0.93145 0.87670 0.96437 1.22065 1.01262 0.98001 0.95107 1.23444 1.01652 1.02286 0.94275 1.23356 1.01789 0.93918 1.02366 1.67633 1.08381 1.19692 1.20400 1.23014 0.88976 0.95544 0.95723 0.75540 0.83647 0.82766 0.74175 0.90230 0.92754 0.93035 0.89354 0.96395 0.93628 0.96514 0.92831 0.92927 0.92373 0.88863 0.87721 0.87713 0.88784 0.81356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 19.25 29.55 0.57 -0.41 16 2 C -0.16 -1.34 13.28 -38.84 -0.52 -1.86 16 3 C -0.02 -0.20 5.75 -106.68 -0.61 -0.82 16 4 C -0.06 -0.52 9.89 -38.93 -0.39 -0.90 16 5 C -0.11 -1.12 9.61 -39.12 -0.38 -1.49 16 6 C 0.09 1.12 6.75 -82.98 -0.56 0.56 16 7 C 0.57 8.17 7.51 -12.27 -0.09 8.08 16 8 O -0.53 -8.31 11.78 5.32 0.06 -8.24 16 9 N -0.66 -9.82 5.38 -48.50 -0.26 -10.08 16 10 C 0.11 1.57 2.48 -131.82 -0.33 1.25 16 11 C -0.04 -0.68 2.28 -90.58 -0.21 -0.89 16 12 C -0.13 -2.50 4.83 -26.61 -0.13 -2.63 16 13 C 0.17 4.02 5.31 -3.71 -0.02 4.00 16 14 N -0.59 -14.60 3.00 -172.32 -0.52 -15.12 16 15 C -0.25 -6.84 9.59 -15.06 -0.14 -6.99 16 16 H 0.06 1.72 7.89 -52.48 -0.41 1.30 16 17 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 18 N -0.90 -26.06 11.19 55.49 0.62 -25.44 16 19 Si 0.90 21.61 29.59 -169.99 -5.03 16.59 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C 0.14 3.00 6.52 -3.71 -0.02 2.97 16 24 C -0.13 -2.15 5.22 -26.61 -0.14 -2.29 16 25 C -0.18 -2.53 9.37 -26.69 -0.25 -2.78 16 26 C -0.18 -2.49 8.91 -26.69 -0.24 -2.73 16 27 N -0.45 -5.68 9.51 -9.49 -0.09 -5.77 16 28 C 0.13 1.34 10.92 -17.15 -0.19 1.15 16 29 H 0.23 0.55 7.80 -54.09 -0.42 0.13 16 30 H 0.15 0.85 8.06 -52.49 -0.42 0.42 16 31 H 0.15 1.40 7.63 -52.49 -0.40 1.00 16 32 H 0.42 6.33 5.97 -40.82 -0.24 6.08 16 33 H 0.08 1.32 7.90 -51.93 -0.41 0.91 16 34 H 0.05 1.02 6.50 -51.93 -0.34 0.68 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.09 2.33 6.04 -51.93 -0.31 2.01 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.05 1.10 7.93 -51.93 -0.41 0.68 16 41 H 0.05 0.80 7.25 -51.93 -0.38 0.42 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.09 1.22 8.05 -51.93 -0.42 0.80 16 44 H 0.10 1.59 6.37 -51.93 -0.33 1.26 16 45 H 0.10 1.58 6.37 -51.93 -0.33 1.25 16 46 H 0.09 1.22 7.60 -51.93 -0.39 0.83 16 47 H 0.17 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 384.40 15.07 5.79 5.79 Total: -1.00 -31.15 384.40 -9.62 -40.77 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.48 Total: 7.31 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -3.72 Total: -5.80 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.25 Total: -56.41 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.06 Total: -8.24 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.15 -9.62 -40.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000314701.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.680 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds