Wall clock time and date at job start Tue Mar 31 2020 22:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39990 * 120.46213 * 313.71140 * 3 2 1 5 5 C 1.38219 * 118.36680 * 179.75685 * 4 3 2 6 6 C 1.39491 * 119.20656 * 0.50670 * 5 4 3 7 7 C 1.47987 * 119.57043 * 179.75483 * 6 5 4 8 8 O 1.21548 * 119.99878 * 359.72774 * 7 6 5 9 9 N 1.34772 * 120.00392 * 179.72589 * 7 6 5 10 10 C 1.46499 * 120.00331 * 179.97438 * 9 7 6 11 11 C 1.53003 * 115.55073 * 180.02562 * 10 9 7 12 12 C 1.53036 * 109.45910 * 34.41963 * 11 10 9 13 13 C 1.53189 * 109.31589 * 178.61253 * 12 11 10 14 14 N 1.46927 * 108.77499 * 54.63666 * 13 12 11 15 15 C 1.36932 * 120.63177 * 126.41632 * 14 13 12 16 16 H 1.08004 * 120.00038 * 207.66728 * 15 14 13 17 17 C 1.38814 * 119.99982 * 27.66313 * 15 14 13 18 18 N 1.31612 * 120.00200 * 17.37133 * 17 15 14 19 19 Si 1.86798 * 119.99944 * 197.36766 * 17 15 14 20 20 H 1.48503 * 109.47280 * 59.99851 * 19 17 15 21 21 H 1.48501 * 109.47190 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47276 * 300.00228 * 19 17 15 23 23 C 1.46931 * 118.73618 * 306.39418 * 14 13 12 24 24 C 1.53039 * 109.46243 * 274.35322 * 11 10 9 25 25 C 1.52996 * 117.50349 * 325.67626 * 10 9 7 26 26 C 1.52999 * 117.49657 * 34.33988 * 10 9 7 27 27 N 1.32818 * 120.86002 * 359.47829 * 6 5 4 28 28 C 1.31294 * 121.78900 * 0.27442 * 27 6 5 29 29 H 4.52936 * 13.94738 * 0.02562 * 4 2 1 30 30 H 1.07998 * 120.81688 * 0.02562 * 4 3 2 31 31 H 1.07996 * 120.39467 * 180.26225 * 5 4 3 32 32 H 0.97000 * 119.99837 * 0.02562 * 9 7 6 33 33 H 1.09001 * 109.44702 * 154.38562 * 11 10 9 34 34 H 1.09004 * 109.50401 * 298.56806 * 12 11 10 35 35 H 1.09006 * 109.49890 * 58.66605 * 12 11 10 36 36 H 1.08996 * 109.59205 * 174.42339 * 13 12 11 37 37 H 1.09002 * 109.58857 * 294.85472 * 13 12 11 38 38 H 0.96996 * 120.00390 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.58954 * 293.81785 * 23 14 13 40 40 H 1.08999 * 109.58319 * 173.39833 * 23 14 13 41 41 H 1.08998 * 109.49975 * 301.34028 * 24 11 10 42 42 H 1.09001 * 109.49731 * 61.39982 * 24 11 10 43 43 H 1.09000 * 117.50041 * 215.00243 * 25 10 9 44 44 H 1.09002 * 117.49448 * 0.02562 * 25 10 9 45 45 H 1.09000 * 117.50000 * 359.97060 * 26 10 9 46 46 H 1.08996 * 117.50158 * 144.97575 * 26 10 9 47 47 H 1.08005 * 119.64927 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3161 -0.8329 0.8722 5 6 4.6973 -0.8011 0.8321 6 6 5.3327 0.0614 -0.0614 7 6 6.8112 0.1059 -0.1072 8 8 7.4638 -0.6025 0.6342 9 7 7.4341 0.9319 -0.9710 10 6 8.8977 0.9764 -1.0159 11 6 9.4974 1.9496 -2.0329 12 6 8.6015 3.1852 -2.1458 13 6 9.2228 4.1725 -3.1387 14 7 9.4564 3.4783 -4.4124 15 6 8.9630 3.9860 -5.5844 16 1 8.7319 3.3231 -6.4052 17 6 8.7596 5.3527 -5.7177 18 7 9.3411 6.1889 -4.8842 19 14 7.6609 6.0050 -7.0803 20 1 6.2918 5.4526 -6.9194 21 1 7.6088 7.4873 -7.0074 22 1 8.2088 5.5936 -8.3978 23 6 10.2301 2.2292 -4.4045 24 6 9.5975 1.2638 -3.3973 25 6 9.6514 0.7776 0.3006 26 6 9.6524 -0.3291 -0.7570 27 7 4.6280 0.8391 -0.8753 28 6 3.3151 0.8347 -0.8714 29 1 -1.0499 -0.0009 0.0002 30 1 2.7974 -1.4879 1.5565 31 1 5.2777 -1.4335 1.4875 32 1 6.9133 1.4975 -1.5624 33 1 10.4920 2.2509 -1.7040 34 1 7.6139 2.8877 -2.4982 35 1 8.5118 3.6600 -1.1686 36 1 8.5415 5.0083 -3.2978 37 1 10.1699 4.5405 -2.7441 38 1 9.1993 7.1439 -4.9775 39 1 11.2594 2.4387 -4.1131 40 1 10.2134 1.7829 -5.3988 41 1 10.2166 0.3708 -3.3111 42 1 8.6006 0.9838 -3.7378 43 1 10.5744 1.3399 0.4420 44 1 9.0582 0.6132 1.2002 45 1 9.0599 -1.2209 -0.5528 46 1 10.5759 -0.4950 -1.3116 47 1 2.7766 1.4812 -1.5486 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000314701.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:01 Heat of formation + Delta-G solvation = 90.589612 kcal Electronic energy + Delta-G solvation = -28920.545726 eV Core-core repulsion = 25070.706215 eV Total energy + Delta-G solvation = -3849.839511 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.01358 -40.90914 -39.30694 -37.43790 -35.50102 -34.57867 -34.03545 -33.30675 -32.17513 -31.57179 -31.31378 -27.44411 -26.39589 -24.76246 -24.44195 -24.01254 -23.01516 -22.50943 -21.23842 -20.21733 -20.12929 -19.42603 -18.69512 -17.77449 -16.96713 -16.68029 -16.47159 -16.32592 -16.29937 -15.69030 -15.32342 -15.21968 -15.02141 -14.86266 -14.75791 -14.60118 -14.37313 -14.21665 -13.90914 -13.57468 -13.14013 -12.93918 -12.70313 -12.60950 -12.52191 -12.36382 -12.13178 -11.99744 -11.91560 -11.88364 -11.78296 -11.49183 -11.22579 -11.11287 -10.95905 -10.88084 -10.57436 -10.49685 -9.94151 -9.55764 -8.65150 -7.84873 -5.29085 -0.79941 0.09242 1.32415 1.47838 1.50117 1.56882 1.68157 1.93731 2.15196 2.53392 2.83876 2.91500 3.01080 3.23509 3.28893 3.56032 3.61113 3.71278 3.74228 3.87727 3.91684 4.02059 4.11549 4.19786 4.34897 4.49657 4.53968 4.61394 4.69804 4.71236 4.75989 4.83446 4.88805 4.94686 5.01911 5.04790 5.06702 5.18716 5.24498 5.26764 5.37214 5.39406 5.41954 5.52973 5.58793 5.67507 5.78742 6.32295 6.41871 6.48353 6.65186 7.04941 7.17913 7.89964 8.41255 9.21247 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009685 B = 0.003222 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.489028 B = 8689.316887 C =11073.467046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.211 4.211 3 C -0.013 4.013 4 C -0.056 4.056 5 C -0.105 4.105 6 C 0.061 3.939 7 C 0.566 3.434 8 O -0.549 6.549 9 N -0.668 5.668 10 C 0.098 3.902 11 C -0.032 4.032 12 C -0.119 4.119 13 C 0.179 3.821 14 N -0.609 5.609 15 C -0.262 4.262 16 H 0.064 0.936 17 C -0.050 4.050 18 N -0.934 5.934 19 Si 0.964 3.036 20 H -0.279 1.279 21 H -0.294 1.294 22 H -0.276 1.276 23 C 0.140 3.860 24 C -0.111 4.111 25 C -0.172 4.172 26 C -0.166 4.166 27 N -0.473 5.473 28 C 0.113 3.887 29 H 0.265 0.735 30 H 0.176 0.824 31 H 0.163 0.837 32 H 0.416 0.584 33 H 0.084 0.916 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.053 0.947 37 H -0.002 1.002 38 H 0.249 0.751 39 H 0.017 0.983 40 H 0.052 0.948 41 H 0.081 0.919 42 H 0.049 0.951 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.110 0.890 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.989 -15.530 13.490 24.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.212 4.212 3 C -0.015 4.015 4 C -0.081 4.081 5 C -0.126 4.126 6 C -0.076 4.076 7 C 0.352 3.648 8 O -0.428 6.428 9 N -0.318 5.318 10 C 0.011 3.989 11 C -0.051 4.051 12 C -0.158 4.158 13 C 0.053 3.947 14 N -0.333 5.333 15 C -0.392 4.392 16 H 0.082 0.918 17 C -0.245 4.245 18 N -0.580 5.580 19 Si 0.792 3.208 20 H -0.205 1.205 21 H -0.220 1.220 22 H -0.202 1.202 23 C 0.015 3.985 24 C -0.150 4.150 25 C -0.211 4.211 26 C -0.204 4.204 27 N -0.184 5.184 28 C -0.047 4.047 29 H 0.281 0.719 30 H 0.194 0.806 31 H 0.181 0.819 32 H 0.254 0.746 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.016 0.984 38 H 0.058 0.942 39 H 0.035 0.965 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.068 0.932 43 H 0.125 0.875 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.129 0.871 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -13.001 -15.302 13.400 24.140 hybrid contribution -1.120 0.635 -0.548 1.399 sum -14.121 -14.667 12.852 24.076 Atomic orbital electron populations 1.25912 0.96453 0.95189 0.95226 1.19821 0.91862 1.04743 1.04745 1.17317 0.89051 0.97689 0.97454 1.21989 0.92795 0.96566 0.96751 1.22170 0.95253 0.97509 0.97622 1.21227 0.93656 0.96600 0.96133 1.18087 0.86501 0.79951 0.80291 1.90722 1.65905 1.43445 1.42698 1.45332 1.06141 1.41537 1.38741 1.20869 0.78653 1.00175 0.99196 1.20624 0.98704 0.92657 0.93072 1.21971 0.98530 0.96413 0.98881 1.20558 0.96486 0.93439 0.84207 1.44303 1.61042 1.24801 1.03143 1.19462 1.35708 0.90336 0.93695 0.91795 1.25746 1.01486 0.96505 1.00794 1.70171 1.44937 1.01685 1.41242 0.85394 0.79391 0.76539 0.79453 1.20469 1.22040 1.20220 1.21067 0.92992 0.86759 0.97673 1.21902 1.00916 0.97985 0.94216 1.23450 1.01781 1.02338 0.93493 1.23358 1.01893 0.93042 1.02099 1.67537 1.09467 1.20343 1.21045 1.23283 0.88474 0.96378 0.96598 0.71913 0.80649 0.81913 0.74579 0.89790 0.93093 0.91936 0.92826 0.98394 0.94160 0.96468 0.92914 0.90044 0.93226 0.87452 0.88717 0.88636 0.87145 0.80185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 19.25 74.32 1.43 0.39 16 2 C -0.21 -3.16 13.28 30.01 0.40 -2.76 16 3 C -0.01 -0.23 5.75 -21.20 -0.12 -0.35 16 4 C -0.06 -0.87 9.89 22.69 0.22 -0.64 16 5 C -0.10 -2.05 9.61 22.57 0.22 -1.83 16 6 C 0.06 1.54 6.75 41.88 0.28 1.82 16 7 C 0.57 16.34 7.51 86.83 0.65 16.99 16 8 O -0.55 -16.97 11.78 -3.87 -0.05 -17.01 16 9 N -0.67 -19.69 5.38 -425.62 -2.29 -21.97 16 10 C 0.10 2.83 2.48 3.60 0.01 2.84 16 11 C -0.03 -1.01 2.28 -10.77 -0.02 -1.03 16 12 C -0.12 -4.43 4.83 30.67 0.15 -4.28 16 13 C 0.18 8.62 5.31 86.36 0.46 9.07 16 14 N -0.61 -30.58 3.00 -699.10 -2.09 -32.67 16 15 C -0.26 -14.49 9.59 84.03 0.81 -13.68 16 16 H 0.06 3.46 7.89 -2.91 -0.02 3.44 16 17 C -0.05 -2.81 4.91 84.86 0.42 -2.39 16 18 N -0.93 -55.53 11.19 21.65 0.24 -55.29 16 19 Si 0.96 45.12 29.59 68.60 2.03 47.15 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 C 0.14 5.77 6.52 86.36 0.56 6.33 16 24 C -0.11 -3.68 5.22 30.67 0.16 -3.52 16 25 C -0.17 -4.65 9.37 30.62 0.29 -4.36 16 26 C -0.17 -4.39 8.91 30.62 0.27 -4.11 16 27 N -0.47 -12.10 9.51 -183.94 -1.75 -13.85 16 28 C 0.11 2.35 10.92 85.18 0.93 3.28 16 29 H 0.26 0.02 7.80 -4.42 -0.03 -0.02 16 30 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 31 H 0.16 2.80 7.63 -2.91 -0.02 2.78 16 32 H 0.42 12.72 5.97 -92.71 -0.55 12.16 16 33 H 0.08 2.65 7.90 -2.39 -0.02 2.63 16 34 H 0.05 1.94 6.50 -2.38 -0.02 1.92 16 35 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 36 H 0.05 2.94 6.04 -2.39 -0.01 2.93 16 37 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 38 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 39 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 41 H 0.08 2.25 7.25 -2.39 -0.02 2.24 16 42 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.11 2.58 8.05 -2.39 -0.02 2.56 16 44 H 0.09 2.79 6.37 -2.39 -0.02 2.77 16 45 H 0.10 2.76 6.37 -2.39 -0.02 2.75 16 46 H 0.11 2.55 7.60 -2.39 -0.02 2.53 16 47 H 0.18 3.04 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -68.97 384.40 3.64 -65.33 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 0.44 Total: 26.56 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 7.11 Total: 1.76 kcal Atomic # 7 Polarization: -117.89 SS G_CDS: -5.89 Total: -123.78 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.05 Total: -17.01 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -68.97 3.64 -65.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000314701.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.920 kcal (2) G-P(sol) polarization free energy of solvation -68.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds