Wall clock time and date at job start Tue Mar 31 2020 22:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39636 * 120.49230 * 323.64176 * 3 2 1 5 5 N 1.31755 * 120.88525 * 180.02562 * 4 3 2 6 6 C 1.31735 * 122.03799 * 359.67617 * 5 4 3 7 7 C 1.39607 * 120.87645 * 0.59369 * 6 5 4 8 8 C 1.47857 * 120.48862 * 179.72666 * 7 6 5 9 9 O 1.21557 * 119.99815 * 134.55323 * 8 7 6 10 10 N 1.34771 * 120.00087 * 314.54474 * 8 7 6 11 11 C 1.46945 * 120.84543 * 4.04637 * 10 8 7 12 12 C 1.53148 * 109.02425 * 233.99947 * 11 10 8 13 13 C 1.53117 * 109.47377 * 305.92399 * 12 11 10 14 14 C 1.52848 * 109.35447 * 60.64703 * 13 12 11 15 15 H 1.09001 * 108.58776 * 57.11868 * 14 13 12 16 16 C 1.52765 * 110.21446 * 176.76266 * 14 13 12 17 17 N 1.46891 * 109.19498 * 67.37039 * 16 14 13 18 18 C 1.36938 * 120.77225 * 233.31289 * 17 16 14 19 19 H 1.08004 * 119.99259 * 149.00664 * 18 17 16 20 20 C 1.38811 * 120.00127 * 329.01044 * 18 17 16 21 21 N 1.31615 * 119.99703 * 349.51655 * 20 18 17 22 22 Si 1.86797 * 119.99954 * 169.51623 * 20 18 17 23 23 H 1.48501 * 109.47274 * 180.02562 * 22 20 18 24 24 H 1.48504 * 109.47287 * 300.00071 * 22 20 18 25 25 H 1.48502 * 109.47224 * 59.99768 * 22 20 18 26 26 C 1.46981 * 118.45519 * 53.59409 * 17 16 14 27 27 C 1.52020 * 108.53951 * 305.77081 * 26 17 16 28 28 C 1.47314 * 120.84524 * 184.01878 * 10 8 7 29 29 H 1.09003 * 110.06705 * 4.94995 * 28 10 8 30 30 C 1.39680 * 120.48810 * 143.66773 * 3 2 1 31 31 H 4.52729 * 13.92956 * 359.97438 * 4 2 1 32 32 H 1.07998 * 119.55740 * 0.02562 * 4 3 2 33 33 H 1.07994 * 119.56542 * 180.31648 * 6 5 4 34 34 H 1.09000 * 109.54783 * 353.86104 * 11 10 8 35 35 H 1.08997 * 109.54672 * 114.04110 * 11 10 8 36 36 H 1.09001 * 109.46760 * 65.91706 * 12 11 10 37 37 H 1.08995 * 109.47382 * 185.92194 * 12 11 10 38 38 H 1.09003 * 109.49134 * 300.67937 * 13 12 11 39 39 H 1.08999 * 109.49031 * 180.61452 * 13 12 11 40 40 H 1.08995 * 109.51897 * 307.45370 * 16 14 13 41 41 H 1.09005 * 109.51755 * 187.28061 * 16 14 13 42 42 H 0.97001 * 119.99501 * 179.97438 * 21 20 18 43 43 H 1.08999 * 109.61459 * 65.16332 * 26 17 16 44 44 H 1.08997 * 109.61484 * 185.69399 * 26 17 16 45 45 H 1.08998 * 108.58655 * 295.00959 * 27 26 17 46 46 H 1.09007 * 109.55645 * 175.52161 * 27 26 17 47 47 H 1.07993 * 120.91857 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3149 -0.9680 0.7133 5 7 4.6325 -0.9744 0.7191 6 6 5.3385 -0.0821 0.0553 7 6 4.7110 0.9253 -0.6798 8 6 5.5120 1.9260 -1.4168 9 8 5.2175 2.2182 -2.5594 10 7 6.5684 2.5144 -0.8218 11 6 6.9945 2.1122 0.5259 12 6 7.0578 3.3535 1.4206 13 6 7.9481 4.4117 0.7633 14 6 7.3547 4.8034 -0.5898 15 1 6.3362 5.1587 -0.4328 16 6 8.1839 5.9167 -1.2274 17 7 9.5079 5.3894 -1.5834 18 6 10.6490 6.0126 -1.1536 19 1 11.5409 5.4342 -0.9625 20 6 10.6594 7.3876 -0.9636 21 7 9.6502 8.1182 -1.3879 22 14 12.1056 8.2010 -0.1056 23 1 11.8748 9.6659 -0.0276 24 1 12.2422 7.6482 1.2659 25 1 13.3493 7.9354 -0.8724 26 6 9.5795 4.1808 -2.4168 27 6 8.7558 3.0878 -1.7550 28 6 7.3258 3.5766 -1.5060 29 1 6.8463 3.8277 -2.4522 30 6 3.3142 0.9706 -0.7131 31 1 -1.0500 -0.0004 0.0009 32 1 2.7761 -1.7221 1.2677 33 1 6.4171 -0.1278 0.0836 34 1 6.2779 1.4018 0.9381 35 1 7.9793 1.6480 0.4736 36 1 6.0538 3.7561 1.5550 37 1 7.4730 3.0812 2.3909 38 1 8.9490 4.0054 0.6176 39 1 8.0021 5.2911 1.4050 40 1 8.2972 6.7376 -0.5194 41 1 7.6816 6.2761 -2.1256 42 1 9.6573 9.0790 -1.2548 43 1 9.1711 4.3930 -3.4049 44 1 10.6172 3.8602 -2.5081 45 1 9.2218 2.8291 -0.8042 46 1 8.7320 2.2085 -2.3987 47 1 2.7970 1.7340 -1.2753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021669100.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:51 Heat of formation + Delta-G solvation = 69.959271 kcal Electronic energy + Delta-G solvation = -29762.792192 eV Core-core repulsion = 25912.058082 eV Total energy + Delta-G solvation = -3850.734110 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.20154 -40.94131 -39.37841 -37.19498 -35.44423 -34.53833 -34.05531 -33.35426 -32.07424 -31.48918 -30.99799 -27.39360 -26.94721 -25.36132 -25.29849 -23.84413 -23.52691 -22.88244 -21.49418 -19.79164 -19.41999 -18.60886 -18.33649 -18.09473 -17.40162 -17.19611 -16.93244 -16.16024 -15.95613 -15.88263 -15.42189 -15.25705 -15.07405 -14.95473 -14.67868 -14.36440 -14.21022 -14.03437 -13.86341 -13.64973 -13.48089 -13.21236 -12.85431 -12.72776 -12.58489 -12.51780 -12.20783 -11.96747 -11.91258 -11.83765 -11.80050 -11.50298 -11.42977 -11.28277 -11.01979 -10.93661 -10.54576 -10.51544 -9.85042 -9.64967 -8.62073 -7.84098 -5.34977 -0.56256 -0.20559 1.43119 1.49519 1.50514 1.57263 1.63563 1.80596 2.01585 2.52559 2.79849 3.05565 3.25451 3.32836 3.42633 3.60495 3.64327 3.66437 3.77411 3.90371 3.95857 4.05871 4.12299 4.21086 4.31697 4.38727 4.46696 4.52500 4.62291 4.73849 4.75608 4.81376 4.83561 4.91742 4.98821 5.00920 5.05494 5.10934 5.13422 5.22343 5.32937 5.37876 5.43566 5.53371 5.62781 5.67855 5.72535 6.30896 6.43079 6.48109 6.65935 6.94289 7.17347 7.85668 8.40906 9.22108 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024443 B = 0.002654 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.232624 B =10547.487696 C =10618.054223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.207 4.207 3 C -0.041 4.041 4 C 0.146 3.854 5 N -0.485 5.485 6 C 0.140 3.860 7 C -0.180 4.180 8 C 0.561 3.439 9 O -0.579 6.579 10 N -0.590 5.590 11 C 0.091 3.909 12 C -0.125 4.125 13 C -0.097 4.097 14 C -0.105 4.105 15 H 0.052 0.948 16 C 0.190 3.810 17 N -0.601 5.601 18 C -0.253 4.253 19 H 0.071 0.929 20 C -0.050 4.050 21 N -0.940 5.940 22 Si 0.967 3.033 23 H -0.299 1.299 24 H -0.274 1.274 25 H -0.277 1.277 26 C 0.143 3.857 27 C -0.124 4.124 28 C 0.164 3.836 29 H 0.065 0.935 30 C -0.016 4.016 31 H 0.264 0.736 32 H 0.194 0.806 33 H 0.188 0.812 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.063 0.937 41 H -0.017 1.017 42 H 0.248 0.752 43 H 0.004 0.996 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.120 -19.519 8.729 25.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.208 4.208 3 C -0.043 4.043 4 C -0.012 4.012 5 N -0.193 5.193 6 C -0.017 4.017 7 C -0.185 4.185 8 C 0.350 3.650 9 O -0.460 6.460 10 N -0.320 5.320 11 C -0.030 4.030 12 C -0.163 4.163 13 C -0.134 4.134 14 C -0.126 4.126 15 H 0.070 0.930 16 C 0.063 3.937 17 N -0.324 5.324 18 C -0.383 4.383 19 H 0.088 0.912 20 C -0.245 4.245 21 N -0.586 5.586 22 Si 0.795 3.205 23 H -0.225 1.225 24 H -0.200 1.200 25 H -0.203 1.203 26 C 0.017 3.983 27 C -0.163 4.163 28 C 0.061 3.939 29 H 0.083 0.917 30 C -0.042 4.042 31 H 0.280 0.720 32 H 0.210 0.790 33 H 0.205 0.795 34 H 0.125 0.875 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.119 0.881 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.001 0.999 42 H 0.058 0.942 43 H 0.022 0.978 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.089 0.911 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.794 -19.844 8.632 25.663 hybrid contribution 0.060 2.100 -0.770 2.237 sum -13.734 -17.744 7.863 23.776 Atomic orbital electron populations 1.25877 0.96458 0.95617 0.95700 1.19824 0.91902 1.04616 1.04465 1.16890 0.88968 0.97636 1.00781 1.23589 0.89442 0.95157 0.92983 1.67864 1.08140 1.23899 1.19352 1.23462 1.01702 0.87730 0.88781 1.20710 0.94593 0.99897 1.03301 1.18421 0.80094 0.80954 0.85566 1.90782 1.70618 1.65212 1.19347 1.48378 1.28863 1.36834 1.17899 1.22410 1.02379 0.97894 0.80295 1.21914 1.00107 0.94960 0.99351 1.21339 0.99452 0.98476 0.94153 1.21819 0.98610 0.95540 0.96656 0.93005 1.20425 0.84019 0.93556 0.95707 1.44202 1.01881 1.28924 1.57437 1.19439 0.91740 0.89461 1.37694 0.91173 1.25901 1.00001 0.97133 1.01434 1.70141 1.33438 1.04896 1.50105 0.85348 0.79486 0.76681 0.78942 1.22543 1.19965 1.20264 1.20813 0.98462 0.87045 0.92016 1.21989 0.93902 0.98352 1.02075 1.21005 0.91823 0.86163 0.94921 0.91661 1.21746 0.92157 0.96594 0.93742 0.71995 0.78955 0.79489 0.87480 0.88670 0.92232 0.88105 0.91445 0.93436 0.91839 0.99936 0.94242 0.97804 0.91524 0.90223 0.91118 0.84438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 19.25 74.32 1.43 0.11 16 2 C -0.21 -3.44 13.27 30.01 0.40 -3.04 16 3 C -0.04 -0.76 5.73 -21.35 -0.12 -0.88 16 4 C 0.15 2.31 10.91 85.04 0.93 3.23 16 5 N -0.49 -8.74 10.33 -193.75 -2.00 -10.75 16 6 C 0.14 2.60 8.51 85.04 0.72 3.32 16 7 C -0.18 -4.19 5.21 -20.02 -0.10 -4.29 16 8 C 0.56 16.87 7.33 86.79 0.64 17.50 16 9 O -0.58 -22.43 16.46 -3.89 -0.06 -22.50 16 10 N -0.59 -16.48 2.67 -797.30 -2.13 -18.61 16 11 C 0.09 1.85 4.76 86.34 0.41 2.26 16 12 C -0.13 -2.82 6.08 30.68 0.19 -2.63 16 13 C -0.10 -3.09 4.86 30.58 0.15 -2.94 16 14 C -0.11 -3.96 2.45 -10.87 -0.03 -3.99 16 15 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 16 C 0.19 9.19 4.64 86.23 0.40 9.59 16 17 N -0.60 -29.36 2.63 -702.11 -1.85 -31.21 16 18 C -0.25 -13.40 9.60 84.03 0.81 -12.59 16 19 H 0.07 3.57 7.85 -2.91 -0.02 3.54 16 20 C -0.05 -2.72 5.06 84.86 0.43 -2.29 16 21 N -0.94 -55.38 11.02 21.65 0.24 -55.14 16 22 Si 0.97 44.04 29.57 68.60 2.03 46.06 16 23 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 26 C 0.14 5.86 6.50 85.96 0.56 6.42 16 27 C -0.12 -4.08 4.98 30.32 0.15 -3.93 16 28 C 0.16 5.69 2.63 44.94 0.12 5.81 16 29 H 0.07 2.68 7.08 -2.39 -0.02 2.67 16 30 C -0.02 -0.37 9.57 22.99 0.22 -0.15 16 31 H 0.26 0.43 7.80 -4.42 -0.03 0.40 16 32 H 0.19 1.83 8.06 -2.91 -0.02 1.81 16 33 H 0.19 2.67 6.54 -2.91 -0.02 2.65 16 34 H 0.11 1.73 4.21 -2.39 -0.01 1.72 16 35 H 0.10 1.64 7.32 -2.39 -0.02 1.62 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.07 2.30 6.18 -2.39 -0.01 2.29 16 39 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.06 3.46 6.08 -2.39 -0.01 3.45 16 41 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 42 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 43 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 44 H 0.07 2.60 7.94 -2.39 -0.02 2.58 16 45 H 0.08 2.44 5.43 -2.39 -0.01 2.43 16 46 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 47 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -71.21 373.17 4.50 -66.71 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.99 Total: 13.91 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 7.29 Total: 11.52 kcal Atomic # 7 Polarization: -109.96 SS G_CDS: -5.74 Total: -115.70 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.06 Total: -22.50 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -71.21 4.50 -66.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021669100.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.668 kcal (2) G-P(sol) polarization free energy of solvation -71.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds