Wall clock time and date at job start Tue Mar 31 2020 22:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39636 * 120.49300 * 58.63788 * 3 2 1 5 5 N 1.31754 * 120.88221 * 180.02562 * 4 3 2 6 6 C 1.31731 * 122.03822 * 0.02562 * 5 4 3 7 7 C 1.39596 * 120.88002 * 0.25414 * 6 5 4 8 8 C 1.47860 * 120.48857 * 179.72533 * 7 6 5 9 9 O 1.21555 * 119.99911 * 147.68115 * 8 7 6 10 10 N 1.34777 * 120.00371 * 327.67597 * 8 7 6 11 11 C 1.47072 * 120.84112 * 1.46497 * 10 8 7 12 12 C 1.52662 * 109.30189 * 233.36850 * 11 10 8 13 13 C 1.53152 * 109.69233 * 306.24970 * 12 11 10 14 14 C 1.52824 * 109.25946 * 60.70979 * 13 12 11 15 15 H 1.08997 * 109.46493 * 57.99694 * 14 13 12 16 16 C 1.53031 * 110.51448 * 178.40648 * 14 13 12 17 17 N 1.47065 * 108.50261 * 175.22991 * 16 14 13 18 18 C 1.36944 * 120.47254 * 126.83032 * 17 16 14 19 19 H 1.08002 * 119.99383 * 328.20243 * 18 17 16 20 20 C 1.38807 * 120.00248 * 148.19945 * 18 17 16 21 21 N 1.31615 * 120.00317 * 165.81835 * 20 18 17 22 22 Si 1.86807 * 119.99851 * 345.81891 * 20 18 17 23 23 H 1.48500 * 109.46876 * 91.20873 * 22 20 18 24 24 H 1.48497 * 109.47019 * 211.20697 * 22 20 18 25 25 H 1.48498 * 109.47248 * 331.20794 * 22 20 18 26 26 C 1.46862 * 119.05633 * 306.80232 * 17 16 14 27 27 C 1.53320 * 109.10017 * 52.66102 * 26 17 16 28 28 C 1.46709 * 120.84874 * 181.74173 * 10 8 7 29 29 H 1.08998 * 109.53357 * 245.21236 * 28 10 8 30 30 C 1.39678 * 120.48805 * 238.66262 * 3 2 1 31 31 H 4.52733 * 13.93035 * 0.02562 * 4 2 1 32 32 H 1.07997 * 119.55738 * 0.02562 * 4 3 2 33 33 H 1.08007 * 119.55525 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.54186 * 353.28981 * 11 10 8 35 35 H 1.08996 * 109.53877 * 113.54861 * 11 10 8 36 36 H 1.09005 * 109.52149 * 186.11483 * 12 11 10 37 37 H 1.08995 * 109.29634 * 66.24550 * 12 11 10 38 38 H 1.09000 * 109.50584 * 300.77586 * 13 12 11 39 39 H 1.08996 * 109.50617 * 180.64717 * 13 12 11 40 40 H 1.09009 * 109.49985 * 55.52547 * 16 14 13 41 41 H 1.09002 * 109.74754 * 295.07814 * 16 14 13 42 42 H 0.96999 * 120.00447 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.53420 * 292.77417 * 26 17 16 44 44 H 1.08997 * 109.59414 * 172.57934 * 26 17 16 45 45 H 1.08997 * 109.55735 * 186.05549 * 27 26 17 46 46 H 1.08994 * 109.55790 * 65.73145 * 27 26 17 47 47 H 1.08003 * 120.91831 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3148 -0.6253 -1.0274 5 7 4.6323 -0.6298 -1.0348 6 6 5.3384 -0.0516 -0.0848 7 6 4.7111 0.5921 0.9832 8 6 5.5122 1.2330 2.0480 9 8 5.0940 2.2276 2.6079 10 7 6.7060 0.7144 2.3978 11 6 7.2442 -0.4694 1.7110 12 6 7.6045 -1.5327 2.7455 13 6 8.5391 -0.9315 3.7994 14 6 7.8278 0.2232 4.5040 15 1 6.9052 -0.1404 4.9564 16 6 8.7229 0.8204 5.5920 17 7 8.0454 1.9952 6.1610 18 6 7.8555 2.1002 7.5131 19 1 7.7068 1.2112 8.1081 20 6 7.8544 3.3491 8.1189 21 7 7.4018 3.4843 9.3474 22 14 8.4952 4.8381 7.1905 23 1 7.3741 5.4910 6.4679 24 1 9.0926 5.8006 8.1506 25 1 9.5282 4.4063 6.2149 26 6 7.5758 3.0544 5.2585 27 6 6.7079 2.4292 4.1600 28 6 7.4988 1.3128 3.4775 29 1 8.4237 1.7193 3.0683 30 6 3.3143 0.6270 1.0281 31 1 -1.0500 0.0001 -0.0008 32 1 2.7758 -1.1121 -1.8267 33 1 6.4171 -0.0800 -0.1306 34 1 6.4938 -0.8672 1.0278 35 1 8.1376 -0.1916 1.1517 36 1 8.1032 -2.3669 2.2519 37 1 6.6944 -1.8886 3.2282 38 1 9.4429 -0.5613 3.3157 39 1 8.8035 -1.6961 4.5299 40 1 9.6752 1.1214 5.1552 41 1 8.8952 0.0811 6.3742 42 1 7.4007 4.3571 9.7706 43 1 8.4324 3.5540 4.8060 44 1 6.9863 3.7787 5.8205 45 1 6.4439 3.1905 3.4260 46 1 5.8012 2.0163 4.6021 47 1 2.7972 1.1203 1.8378 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021669102.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:59 Heat of formation + Delta-G solvation = 118.870056 kcal Electronic energy + Delta-G solvation = -29879.124855 eV Core-core repulsion = 26030.511676 eV Total energy + Delta-G solvation = -3848.613179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.37360 -39.97142 -37.89428 -36.30711 -34.77640 -33.38734 -32.93053 -32.24456 -31.18236 -30.28181 -29.79025 -26.19302 -25.68843 -24.56052 -23.92578 -23.03869 -22.13486 -21.08835 -20.09573 -19.72324 -18.79876 -17.57607 -17.24511 -16.70000 -16.64163 -15.74870 -15.41092 -15.19063 -15.01042 -14.68627 -14.40238 -14.17553 -14.09658 -13.75666 -13.55093 -13.14913 -13.03354 -12.97435 -12.55124 -12.39806 -12.33126 -12.05874 -11.91530 -11.50737 -11.23484 -11.14524 -11.07385 -10.86465 -10.61892 -10.46104 -10.30784 -10.16679 -10.08306 -10.01220 -9.62866 -9.43184 -9.15627 -8.94771 -8.57931 -8.48057 -6.85714 -5.90030 -3.32553 0.14018 0.58900 2.26303 2.39213 2.74525 2.95129 3.38327 3.50915 3.53742 3.54620 3.69956 3.95912 4.20551 4.35671 4.43634 4.56886 4.61005 4.78505 4.81508 4.86337 5.00244 5.09018 5.13506 5.27020 5.32425 5.39137 5.42264 5.49419 5.59544 5.64517 5.69621 5.73446 5.86305 5.98296 6.04328 6.08285 6.14084 6.15903 6.22399 6.32570 6.52954 6.63177 6.74435 6.77065 6.86814 7.05967 7.10327 7.35808 7.39287 8.04869 8.12493 8.37822 8.98214 9.75687 10.13874 11.26074 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015358 B = 0.003226 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.721488 B = 8676.157188 C = 9698.970788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.155 4.155 3 C -0.044 4.044 4 C 0.140 3.860 5 N -0.482 5.482 6 C 0.120 3.880 7 C -0.174 4.174 8 C 0.559 3.441 9 O -0.514 6.514 10 N -0.598 5.598 11 C 0.077 3.923 12 C -0.133 4.133 13 C -0.114 4.114 14 C -0.116 4.116 15 H 0.074 0.926 16 C 0.159 3.841 17 N -0.608 5.608 18 C -0.260 4.260 19 H 0.083 0.917 20 C 0.024 3.976 21 N -0.914 5.914 22 Si 0.891 3.109 23 H -0.287 1.287 24 H -0.305 1.305 25 H -0.269 1.269 26 C 0.117 3.883 27 C -0.121 4.121 28 C 0.159 3.841 29 H 0.070 0.930 30 C 0.001 3.999 31 H 0.228 0.772 32 H 0.165 0.835 33 H 0.181 0.819 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.023 0.977 41 H 0.066 0.934 42 H 0.262 0.738 43 H 0.024 0.976 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.841 -11.470 -22.792 26.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.155 4.155 3 C -0.046 4.046 4 C -0.018 4.018 5 N -0.189 5.189 6 C -0.036 4.036 7 C -0.179 4.179 8 C 0.346 3.654 9 O -0.390 6.390 10 N -0.330 5.330 11 C -0.046 4.046 12 C -0.171 4.171 13 C -0.152 4.152 14 C -0.137 4.137 15 H 0.093 0.907 16 C 0.033 3.967 17 N -0.331 5.331 18 C -0.389 4.389 19 H 0.101 0.899 20 C -0.174 4.174 21 N -0.557 5.557 22 Si 0.722 3.278 23 H -0.215 1.215 24 H -0.233 1.233 25 H -0.194 1.194 26 C -0.008 4.008 27 C -0.161 4.161 28 C 0.057 3.943 29 H 0.088 0.912 30 C -0.025 4.025 31 H 0.245 0.755 32 H 0.182 0.818 33 H 0.198 0.802 34 H 0.118 0.882 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.041 0.959 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.041 0.959 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.089 0.911 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.609 -11.227 -22.998 26.199 hybrid contribution -0.345 1.208 0.300 1.292 sum -5.954 -10.019 -22.698 25.515 Atomic orbital electron populations 1.24956 0.95741 0.98335 0.98151 1.19569 0.91463 1.02164 1.02336 1.16829 0.88213 1.02237 0.97332 1.23122 0.89731 0.93283 0.95638 1.67787 1.07604 1.18068 1.25461 1.23707 1.01283 0.90389 0.88272 1.21095 0.94815 1.03194 0.98825 1.18019 0.80903 0.84134 0.82337 1.90894 1.70118 1.24733 1.53287 1.48145 1.18997 1.29518 1.36308 1.22524 0.99878 0.86276 0.95906 1.21825 1.00617 0.97444 0.97236 1.21520 0.98002 0.98015 0.97640 1.22087 1.00884 0.94442 0.96318 0.90711 1.20880 0.92296 0.89872 0.93684 1.44381 1.65680 1.19695 1.03356 1.18901 1.44227 0.94400 0.81357 0.89937 1.25368 0.98947 0.97879 0.95247 1.69776 1.48320 1.23843 1.13791 0.86850 0.79457 0.82962 0.78551 1.21472 1.23346 1.19420 1.21607 0.95483 0.92105 0.91651 1.22547 0.98324 0.97246 0.97949 1.21343 0.93518 0.93994 0.85440 0.91213 1.21789 0.92276 0.92004 0.96450 0.75538 0.81793 0.80226 0.88172 0.90632 0.90695 0.91562 0.91815 0.91364 0.95884 0.91535 0.92779 0.95861 0.90843 0.89867 0.91065 0.83215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 19.25 29.55 0.57 -0.56 16 2 C -0.15 -1.46 13.27 -38.84 -0.52 -1.97 16 3 C -0.04 -0.44 5.73 -106.91 -0.61 -1.06 16 4 C 0.14 1.25 10.91 -17.06 -0.19 1.06 16 5 N -0.48 -4.74 10.33 -12.78 -0.13 -4.87 16 6 C 0.12 1.16 8.63 -17.09 -0.15 1.01 16 7 C -0.17 -2.04 5.54 -104.87 -0.58 -2.62 16 8 C 0.56 8.11 7.39 -12.32 -0.09 8.02 16 9 O -0.51 -9.32 12.40 5.32 0.07 -9.25 16 10 N -0.60 -7.90 2.98 -166.70 -0.50 -8.40 16 11 C 0.08 0.71 4.88 -3.90 -0.02 0.69 16 12 C -0.13 -1.25 6.05 -26.83 -0.16 -1.41 16 13 C -0.11 -1.31 5.25 -26.74 -0.14 -1.45 16 14 C -0.12 -1.83 2.21 -90.55 -0.20 -2.03 16 15 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 16 C 0.16 3.06 5.86 -3.72 -0.02 3.04 16 17 N -0.61 -14.62 2.75 -172.27 -0.47 -15.09 16 18 C -0.26 -7.40 10.03 -15.06 -0.15 -7.55 16 19 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 20 C 0.02 0.72 5.31 -17.43 -0.09 0.63 16 21 N -0.91 -28.64 13.97 55.49 0.78 -27.87 16 22 Si 0.89 23.14 24.27 -169.99 -4.13 19.02 16 23 H -0.29 -7.32 6.65 56.52 0.38 -6.94 16 24 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 25 H -0.27 -6.77 6.34 56.52 0.36 -6.42 16 26 C 0.12 2.68 4.15 -3.68 -0.02 2.66 16 27 C -0.12 -2.39 3.81 -26.62 -0.10 -2.49 16 28 C 0.16 2.53 2.63 -67.73 -0.18 2.35 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 C 0.00 0.01 9.46 -38.46 -0.36 -0.35 16 31 H 0.23 0.74 7.80 -54.09 -0.42 0.32 16 32 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.18 1.36 5.30 -52.48 -0.28 1.08 16 34 H 0.10 0.80 3.59 -52.36 -0.19 0.62 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.02 0.43 8.14 -51.92 -0.42 0.00 16 41 H 0.07 1.28 7.94 -51.93 -0.41 0.87 16 42 H 0.26 7.81 8.31 -40.82 -0.34 7.48 16 43 H 0.02 0.52 6.72 -51.93 -0.35 0.18 16 44 H 0.07 1.86 4.67 -51.93 -0.24 1.62 16 45 H 0.08 1.65 6.23 -51.93 -0.32 1.33 16 46 H 0.07 1.56 7.35 -51.93 -0.38 1.18 16 47 H 0.15 1.76 8.01 -52.48 -0.42 1.34 16 LS Contribution 364.32 15.07 5.49 5.49 Total: -1.00 -34.24 364.32 -8.36 -42.60 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.45 Total: 0.39 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -3.01 Total: -2.03 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.33 Total: -56.22 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.07 Total: -9.25 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -4.13 Total: 19.02 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.24 -8.36 -42.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021669102.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.465 kcal (2) G-P(sol) polarization free energy of solvation -34.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds