Wall clock time and date at job start Tue Mar 31 2020 22:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39636 * 120.49300 * 58.63788 * 3 2 1 5 5 N 1.31754 * 120.88221 * 180.02562 * 4 3 2 6 6 C 1.31731 * 122.03822 * 0.02562 * 5 4 3 7 7 C 1.39596 * 120.88002 * 0.25414 * 6 5 4 8 8 C 1.47860 * 120.48857 * 179.72533 * 7 6 5 9 9 O 1.21555 * 119.99911 * 147.68115 * 8 7 6 10 10 N 1.34777 * 120.00371 * 327.67597 * 8 7 6 11 11 C 1.47072 * 120.84112 * 1.46497 * 10 8 7 12 12 C 1.52662 * 109.30189 * 233.36850 * 11 10 8 13 13 C 1.53152 * 109.69233 * 306.24970 * 12 11 10 14 14 C 1.52824 * 109.25946 * 60.70979 * 13 12 11 15 15 H 1.08997 * 109.46493 * 57.99694 * 14 13 12 16 16 C 1.53031 * 110.51448 * 178.40648 * 14 13 12 17 17 N 1.47065 * 108.50261 * 175.22991 * 16 14 13 18 18 C 1.36944 * 120.47254 * 126.83032 * 17 16 14 19 19 H 1.08002 * 119.99383 * 328.20243 * 18 17 16 20 20 C 1.38807 * 120.00248 * 148.19945 * 18 17 16 21 21 N 1.31615 * 120.00317 * 165.81835 * 20 18 17 22 22 Si 1.86807 * 119.99851 * 345.81891 * 20 18 17 23 23 H 1.48500 * 109.46876 * 91.20873 * 22 20 18 24 24 H 1.48497 * 109.47019 * 211.20697 * 22 20 18 25 25 H 1.48498 * 109.47248 * 331.20794 * 22 20 18 26 26 C 1.46862 * 119.05633 * 306.80232 * 17 16 14 27 27 C 1.53320 * 109.10017 * 52.66102 * 26 17 16 28 28 C 1.46709 * 120.84874 * 181.74173 * 10 8 7 29 29 H 1.08998 * 109.53357 * 245.21236 * 28 10 8 30 30 C 1.39678 * 120.48805 * 238.66262 * 3 2 1 31 31 H 4.52733 * 13.93035 * 0.02562 * 4 2 1 32 32 H 1.07997 * 119.55738 * 0.02562 * 4 3 2 33 33 H 1.08007 * 119.55525 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.54186 * 353.28981 * 11 10 8 35 35 H 1.08996 * 109.53877 * 113.54861 * 11 10 8 36 36 H 1.09005 * 109.52149 * 186.11483 * 12 11 10 37 37 H 1.08995 * 109.29634 * 66.24550 * 12 11 10 38 38 H 1.09000 * 109.50584 * 300.77586 * 13 12 11 39 39 H 1.08996 * 109.50617 * 180.64717 * 13 12 11 40 40 H 1.09009 * 109.49985 * 55.52547 * 16 14 13 41 41 H 1.09002 * 109.74754 * 295.07814 * 16 14 13 42 42 H 0.96999 * 120.00447 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.53420 * 292.77417 * 26 17 16 44 44 H 1.08997 * 109.59414 * 172.57934 * 26 17 16 45 45 H 1.08997 * 109.55735 * 186.05549 * 27 26 17 46 46 H 1.08994 * 109.55790 * 65.73145 * 27 26 17 47 47 H 1.08003 * 120.91831 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3148 -0.6253 -1.0274 5 7 4.6323 -0.6298 -1.0348 6 6 5.3384 -0.0516 -0.0848 7 6 4.7111 0.5921 0.9832 8 6 5.5122 1.2330 2.0480 9 8 5.0940 2.2276 2.6079 10 7 6.7060 0.7144 2.3978 11 6 7.2442 -0.4694 1.7110 12 6 7.6045 -1.5327 2.7455 13 6 8.5391 -0.9315 3.7994 14 6 7.8278 0.2232 4.5040 15 1 6.9052 -0.1404 4.9564 16 6 8.7229 0.8204 5.5920 17 7 8.0454 1.9952 6.1610 18 6 7.8555 2.1002 7.5131 19 1 7.7068 1.2112 8.1081 20 6 7.8544 3.3491 8.1189 21 7 7.4018 3.4843 9.3474 22 14 8.4952 4.8381 7.1905 23 1 7.3741 5.4910 6.4679 24 1 9.0926 5.8006 8.1506 25 1 9.5282 4.4063 6.2149 26 6 7.5758 3.0544 5.2585 27 6 6.7079 2.4292 4.1600 28 6 7.4988 1.3128 3.4775 29 1 8.4237 1.7193 3.0683 30 6 3.3143 0.6270 1.0281 31 1 -1.0500 0.0001 -0.0008 32 1 2.7758 -1.1121 -1.8267 33 1 6.4171 -0.0800 -0.1306 34 1 6.4938 -0.8672 1.0278 35 1 8.1376 -0.1916 1.1517 36 1 8.1032 -2.3669 2.2519 37 1 6.6944 -1.8886 3.2282 38 1 9.4429 -0.5613 3.3157 39 1 8.8035 -1.6961 4.5299 40 1 9.6752 1.1214 5.1552 41 1 8.8952 0.0811 6.3742 42 1 7.4007 4.3571 9.7706 43 1 8.4324 3.5540 4.8060 44 1 6.9863 3.7787 5.8205 45 1 6.4439 3.1905 3.4260 46 1 5.8012 2.0163 4.6021 47 1 2.7972 1.1203 1.8378 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021669102.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:58 Heat of formation + Delta-G solvation = 96.346817 kcal Electronic energy + Delta-G solvation = -29880.101536 eV Core-core repulsion = 26030.511676 eV Total energy + Delta-G solvation = -3849.589860 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.35611 -40.95624 -39.19965 -37.69493 -35.53134 -34.75526 -34.17450 -33.57083 -32.44697 -31.43386 -31.19690 -27.46159 -27.05889 -25.40222 -25.08770 -24.36025 -23.72037 -22.11477 -21.47641 -20.89257 -19.65472 -18.82679 -18.32775 -18.01625 -17.66174 -17.09847 -16.78645 -16.41860 -16.05934 -15.79754 -15.67873 -15.55217 -15.10862 -15.04021 -14.76590 -14.45267 -14.34918 -13.98251 -13.95750 -13.87157 -13.58734 -13.32302 -13.27123 -12.77182 -12.73377 -12.32875 -12.29205 -12.07684 -11.91302 -11.83190 -11.69402 -11.64328 -11.41660 -11.30604 -10.96679 -10.90110 -10.71595 -10.21895 -9.85058 -9.61277 -8.86268 -8.19700 -5.58050 -0.60289 -0.23809 1.29287 1.35667 1.46053 1.48646 1.62367 1.80724 2.05570 2.38793 2.79463 3.03533 3.05595 3.23633 3.29796 3.39802 3.59442 3.64889 3.74907 3.76440 3.87624 4.06973 4.08835 4.17932 4.22800 4.31281 4.36386 4.44002 4.57867 4.61971 4.69882 4.75362 4.79125 4.82387 4.83015 4.86852 4.96324 5.00727 5.09472 5.13021 5.23536 5.33785 5.34375 5.36251 5.51854 5.60222 5.86303 6.09824 6.31248 6.45694 6.63829 6.89598 7.02511 7.58177 7.99663 9.00332 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015358 B = 0.003226 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.721488 B = 8676.157188 C = 9698.970788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.208 4.208 3 C -0.045 4.045 4 C 0.148 3.852 5 N -0.485 5.485 6 C 0.131 3.869 7 C -0.185 4.185 8 C 0.555 3.445 9 O -0.564 6.564 10 N -0.594 5.594 11 C 0.071 3.929 12 C -0.128 4.128 13 C -0.107 4.107 14 C -0.105 4.105 15 H 0.042 0.958 16 C 0.154 3.846 17 N -0.623 5.623 18 C -0.248 4.248 19 H 0.049 0.951 20 C -0.036 4.036 21 N -0.963 5.963 22 Si 0.954 3.046 23 H -0.285 1.285 24 H -0.308 1.308 25 H -0.250 1.250 26 C 0.115 3.885 27 C -0.106 4.106 28 C 0.164 3.836 29 H 0.090 0.910 30 C -0.016 4.016 31 H 0.264 0.736 32 H 0.194 0.806 33 H 0.207 0.793 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.049 0.951 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.047 0.953 41 H 0.058 0.942 42 H 0.262 0.738 43 H 0.038 0.962 44 H 0.041 0.959 45 H 0.082 0.918 46 H 0.036 0.964 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.813 -13.311 -27.277 30.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.209 4.209 3 C -0.047 4.047 4 C -0.010 4.010 5 N -0.192 5.192 6 C -0.026 4.026 7 C -0.190 4.190 8 C 0.343 3.657 9 O -0.444 6.444 10 N -0.325 5.325 11 C -0.050 4.050 12 C -0.166 4.166 13 C -0.145 4.145 14 C -0.126 4.126 15 H 0.060 0.940 16 C 0.029 3.971 17 N -0.347 5.347 18 C -0.378 4.378 19 H 0.066 0.934 20 C -0.230 4.230 21 N -0.609 5.609 22 Si 0.783 3.217 23 H -0.212 1.212 24 H -0.237 1.237 25 H -0.174 1.174 26 C -0.010 4.010 27 C -0.145 4.145 28 C 0.061 3.939 29 H 0.108 0.892 30 C -0.042 4.042 31 H 0.280 0.720 32 H 0.211 0.789 33 H 0.223 0.777 34 H 0.134 0.866 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.068 0.932 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.100 0.900 46 H 0.055 0.945 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.553 -13.133 -27.551 30.859 hybrid contribution -0.841 1.650 1.678 2.500 sum -5.395 -11.483 -25.873 28.816 Atomic orbital electron populations 1.25889 0.96502 0.95762 0.95683 1.19882 0.92015 1.04409 1.04602 1.16925 0.88930 1.01826 0.96999 1.23593 0.89631 0.92136 0.95601 1.67906 1.07942 1.18170 1.25214 1.24007 1.02351 0.89137 0.87076 1.20837 0.94460 1.04690 0.99049 1.18458 0.81110 0.83640 0.82479 1.90858 1.71188 1.27059 1.55282 1.48154 1.18407 1.30439 1.35465 1.22911 1.01521 0.84549 0.95986 1.21829 0.99753 0.98374 0.96648 1.21506 0.98694 0.96173 0.98151 1.21900 0.99238 0.95962 0.95494 0.93953 1.21114 0.93529 0.87982 0.94489 1.44520 1.66717 1.21503 1.01972 1.18847 1.42410 0.93204 0.83370 0.93372 1.26043 0.99858 1.00950 0.96191 1.69919 1.50641 1.24494 1.15839 0.85824 0.79127 0.79320 0.77469 1.21203 1.23732 1.17395 1.21605 0.95909 0.91589 0.91902 1.22279 0.96714 0.98587 0.96914 1.21119 0.93701 0.92845 0.86240 0.89228 1.21775 0.92649 0.92877 0.96914 0.72008 0.78949 0.77652 0.86634 0.87221 0.86911 0.93201 0.89552 0.90846 0.93543 0.92315 0.92954 0.94388 0.94056 0.89993 0.94502 0.84984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 19.25 74.32 1.43 -0.07 16 2 C -0.21 -3.70 13.27 30.01 0.40 -3.30 16 3 C -0.04 -0.87 5.73 -21.35 -0.12 -0.99 16 4 C 0.15 2.29 10.91 85.04 0.93 3.22 16 5 N -0.49 -8.07 10.33 -194.35 -2.01 -10.08 16 6 C 0.13 2.17 8.63 85.04 0.73 2.90 16 7 C -0.19 -4.21 5.54 -20.03 -0.11 -4.32 16 8 C 0.55 16.07 7.39 86.79 0.64 16.71 16 9 O -0.56 -21.44 12.40 -3.89 -0.05 -21.49 16 10 N -0.59 -14.63 2.98 -799.60 -2.38 -17.01 16 11 C 0.07 1.01 4.88 86.16 0.42 1.43 16 12 C -0.13 -1.88 6.05 30.53 0.18 -1.70 16 13 C -0.11 -2.09 5.25 30.59 0.16 -1.93 16 14 C -0.10 -3.20 2.21 -10.75 -0.02 -3.23 16 15 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 16 C 0.15 5.80 5.86 86.28 0.51 6.31 16 17 N -0.62 -30.51 2.75 -698.95 -1.92 -32.42 16 18 C -0.25 -14.75 10.03 84.03 0.84 -13.90 16 19 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 20 C -0.04 -2.21 5.31 84.86 0.45 -1.75 16 21 N -0.96 -63.16 13.97 21.65 0.30 -62.86 16 22 Si 0.95 49.17 24.27 68.60 1.66 50.84 16 23 H -0.28 -14.43 6.65 99.48 0.66 -13.77 16 24 H -0.31 -15.94 7.11 99.48 0.71 -15.23 16 25 H -0.25 -11.96 6.34 99.48 0.63 -11.33 16 26 C 0.12 5.32 4.15 86.42 0.36 5.67 16 27 C -0.11 -4.27 3.81 30.67 0.12 -4.15 16 28 C 0.16 4.98 2.63 45.01 0.12 5.10 16 29 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 30 C -0.02 -0.38 9.46 22.99 0.22 -0.16 16 31 H 0.26 0.79 7.80 -4.42 -0.03 0.75 16 32 H 0.19 1.77 8.06 -2.91 -0.02 1.75 16 33 H 0.21 2.20 5.30 -2.91 -0.02 2.18 16 34 H 0.12 1.36 3.59 -2.79 -0.01 1.35 16 35 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 41 H 0.06 2.27 7.94 -2.39 -0.02 2.25 16 42 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 43 H 0.04 1.65 6.72 -2.39 -0.02 1.64 16 44 H 0.04 2.16 4.67 -2.39 -0.01 2.14 16 45 H 0.08 3.34 6.23 -2.39 -0.01 3.32 16 46 H 0.04 1.71 7.35 -2.39 -0.02 1.69 16 47 H 0.13 3.44 8.01 -2.91 -0.02 3.42 16 Total: -1.00 -81.11 364.32 3.73 -77.38 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 0.86 Total: 9.79 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 7.25 Total: 5.86 kcal Atomic # 7 Polarization: -116.37 SS G_CDS: -6.01 Total: -122.38 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.05 Total: -21.49 kcal Atomic # 14 Polarization: 49.17 SS G_CDS: 1.66 Total: 50.84 kcal Total: -81.11 3.73 -77.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021669102.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.726 kcal (2) G-P(sol) polarization free energy of solvation -81.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds