Wall clock time and date at job start Tue Mar 31 2020 22:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39721 * 119.58921 * 337.47682 * 3 2 1 5 5 C 1.37974 * 119.19865 * 179.97438 * 4 3 2 6 6 C 1.40237 * 118.40333 * 359.97438 * 5 4 3 7 7 C 1.47668 * 120.44155 * 179.97438 * 6 5 4 8 8 O 1.21580 * 120.00067 * 134.68600 * 7 6 5 9 9 N 1.34773 * 120.00342 * 314.67983 * 7 6 5 10 10 C 1.46947 * 120.84763 * 4.03212 * 9 7 6 11 11 C 1.53150 * 109.02148 * 234.00453 * 10 9 7 12 12 C 1.53115 * 109.47929 * 305.92428 * 11 10 9 13 13 C 1.52861 * 109.34725 * 60.64466 * 12 11 10 14 14 H 1.08988 * 109.25583 * 57.51607 * 13 12 11 15 15 C 1.52778 * 110.20528 * 177.56894 * 13 12 11 16 16 N 1.46221 * 109.95697 * 66.79644 * 15 13 12 17 17 C 1.36940 * 120.97710 * 233.70331 * 16 15 13 18 18 H 1.07995 * 119.99952 * 148.71745 * 17 16 15 19 19 C 1.38813 * 119.99551 * 328.71838 * 17 16 15 20 20 N 1.31623 * 120.00205 * 349.54232 * 19 17 16 21 21 Si 1.86802 * 119.99801 * 169.53316 * 19 17 16 22 22 H 1.48500 * 109.46798 * 60.00513 * 21 19 17 23 23 H 1.48505 * 109.47106 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47383 * 300.00535 * 21 19 17 25 25 C 1.46978 * 118.25571 * 53.48432 * 16 15 13 26 26 C 1.53098 * 108.61456 * 305.90861 * 25 16 15 27 27 C 1.47311 * 120.84735 * 183.74097 * 9 7 6 28 28 H 1.08997 * 110.07387 * 4.93308 * 27 9 7 29 29 C 1.39653 * 119.11617 * 0.02562 * 6 5 4 30 30 N 1.31490 * 120.71259 * 359.97351 * 29 6 5 31 31 H 4.51256 * 14.17617 * 359.97438 * 4 2 1 32 32 H 1.08003 * 120.40419 * 0.27451 * 4 3 2 33 33 H 1.08001 * 120.79808 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.54503 * 353.86172 * 10 9 7 35 35 H 1.08998 * 109.55066 * 114.13821 * 10 9 7 36 36 H 1.08997 * 109.46651 * 65.92344 * 11 10 9 37 37 H 1.08994 * 109.46744 * 185.92496 * 11 10 9 38 38 H 1.08996 * 109.48868 * 180.60676 * 12 11 10 39 39 H 1.08999 * 109.49138 * 300.65790 * 12 11 10 40 40 H 1.08994 * 109.51796 * 187.26320 * 15 13 12 41 41 H 1.08999 * 109.51445 * 307.43105 * 15 13 12 42 42 H 0.97001 * 119.99685 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.60884 * 186.17546 * 25 16 15 44 44 H 1.08998 * 109.75798 * 65.73237 * 25 16 15 45 45 H 1.08994 * 109.45780 * 295.31390 * 26 25 16 46 46 H 1.09007 * 109.45269 * 175.37668 * 26 25 16 47 47 H 1.08004 * 119.64617 * 179.97438 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2964 -1.1214 0.4654 5 6 4.6761 -1.1123 0.4613 6 6 5.3343 0.0312 -0.0139 7 6 6.8096 0.0897 -0.0379 8 8 7.3854 0.5095 -1.0230 9 7 7.5179 -0.3222 1.0321 10 6 6.8466 -0.9141 2.1976 11 6 7.2659 -0.1497 3.4567 12 6 8.7938 -0.1212 3.5516 13 6 9.3642 0.5900 2.3246 14 1 8.9460 1.5947 2.2647 15 6 10.8856 0.6829 2.4283 16 7 11.4740 -0.6531 2.3458 17 6 12.3335 -1.1056 3.3111 18 1 12.3709 -2.1580 3.5505 19 6 13.1564 -0.2114 3.9820 20 7 13.2645 1.0297 3.5571 21 14 14.1102 -0.7694 5.4882 22 1 15.0194 -1.8822 5.1139 23 1 14.9082 0.3658 6.0173 24 1 13.1609 -1.2351 6.5309 25 6 11.1153 -1.5019 1.2008 26 6 9.5894 -1.6022 1.1259 27 6 8.9853 -0.1962 1.0607 28 1 9.3329 0.3310 0.1722 29 6 4.5758 1.1144 -0.4632 30 7 3.2619 1.0683 -0.4437 31 1 -1.0500 -0.0007 0.0008 32 1 2.7567 -1.9873 0.8196 33 1 5.2358 -1.9653 0.8156 34 1 5.7663 -0.8435 2.0710 35 1 7.1363 -1.9606 2.2928 36 1 6.8859 0.8706 3.4057 37 1 6.8565 -0.6464 4.3364 38 1 9.0923 0.4135 4.4533 39 1 9.1749 -1.1416 3.5909 40 1 11.2688 1.3016 1.6168 41 1 11.1589 1.1264 3.3857 42 1 13.8399 1.6543 4.0257 43 1 11.5411 -2.4963 1.3349 44 1 11.4986 -1.0608 0.2807 45 1 9.2155 -2.1173 2.0106 46 1 9.3057 -2.1608 0.2339 47 1 5.0738 1.9995 -0.8306 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021712690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:04 Heat of formation + Delta-G solvation = 90.034810 kcal Electronic energy + Delta-G solvation = -29698.427672 eV Core-core repulsion = 25848.564103 eV Total energy + Delta-G solvation = -3849.863569 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.13933 -39.85627 -38.00877 -35.71303 -34.31988 -33.33451 -32.62128 -32.30713 -31.04435 -30.24900 -29.41067 -25.96709 -25.69533 -24.36075 -24.03556 -22.46204 -22.06897 -21.45248 -19.89856 -19.77881 -17.94743 -17.43284 -16.96231 -16.60200 -16.55481 -15.96025 -15.16050 -14.92791 -14.78409 -14.51206 -14.32958 -14.15145 -13.85556 -13.60378 -13.43251 -13.15013 -12.97700 -12.65376 -12.48803 -12.36711 -12.26619 -11.66486 -11.58914 -11.25968 -11.13258 -10.98873 -10.79427 -10.70294 -10.51887 -10.29029 -10.19621 -10.10795 -10.10023 -9.96031 -9.77741 -9.63929 -9.41752 -9.16365 -8.54451 -8.33643 -6.64834 -5.81418 -3.29564 0.09917 0.80986 2.22098 2.28130 2.77841 3.02535 3.35114 3.41120 3.41281 3.51093 3.62248 4.20785 4.34775 4.42529 4.45336 4.64386 4.71507 4.86347 5.07410 5.12207 5.22330 5.35183 5.35531 5.41684 5.44257 5.48858 5.58546 5.61212 5.65703 5.71562 5.83704 6.01625 6.04294 6.13326 6.18618 6.28420 6.37981 6.42872 6.48296 6.65845 6.74997 6.84808 6.91987 6.99751 7.01550 7.30699 7.42114 7.50628 7.66483 7.75375 8.13405 8.45133 9.19965 9.80711 10.39305 11.26550 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027012 B = 0.002590 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.311027 B =10807.494138 C =11116.731070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.149 4.149 3 C 0.238 3.762 4 C -0.150 4.150 5 C -0.046 4.046 6 C -0.165 4.165 7 C 0.559 3.441 8 O -0.533 6.533 9 N -0.595 5.595 10 C 0.094 3.906 11 C -0.135 4.135 12 C -0.104 4.104 13 C -0.116 4.116 14 H 0.058 0.942 15 C 0.175 3.825 16 N -0.586 5.586 17 C -0.251 4.251 18 H 0.064 0.936 19 C 0.005 3.995 20 N -0.904 5.904 21 Si 0.904 3.096 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.145 3.855 26 C -0.140 4.140 27 C 0.154 3.846 28 H 0.097 0.903 29 C 0.158 3.842 30 N -0.470 5.470 31 H 0.231 0.769 32 H 0.146 0.854 33 H 0.151 0.849 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.019 0.981 41 H 0.094 0.906 42 H 0.255 0.745 43 H 0.057 0.943 44 H 0.021 0.979 45 H 0.065 0.935 46 H 0.051 0.949 47 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.053 -4.630 -2.991 22.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.150 4.150 3 C 0.103 3.897 4 C -0.170 4.170 5 C -0.072 4.072 6 C -0.170 4.170 7 C 0.345 3.655 8 O -0.410 6.410 9 N -0.326 5.326 10 C -0.029 4.029 11 C -0.173 4.173 12 C -0.141 4.141 13 C -0.137 4.137 14 H 0.076 0.924 15 C 0.049 3.951 16 N -0.308 5.308 17 C -0.381 4.381 18 H 0.081 0.919 19 C -0.193 4.193 20 N -0.548 5.548 21 Si 0.734 3.266 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.018 3.982 26 C -0.180 4.180 27 C 0.053 3.947 28 H 0.115 0.885 29 C -0.002 4.002 30 N -0.178 5.178 31 H 0.247 0.753 32 H 0.164 0.836 33 H 0.168 0.832 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.037 0.963 41 H 0.112 0.888 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.039 0.961 45 H 0.084 0.916 46 H 0.070 0.930 47 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -22.038 -3.548 -3.729 22.631 hybrid contribution 0.762 -0.934 1.145 1.663 sum -21.276 -4.481 -2.584 21.896 Atomic orbital electron populations 1.24963 0.95637 0.97928 0.96904 1.19293 0.91041 1.02067 1.02620 1.16726 0.88188 0.90072 0.94704 1.21966 0.94300 0.99219 1.01546 1.21818 0.94113 0.97592 0.93631 1.21199 0.95415 0.97110 1.03302 1.18002 0.85858 0.78350 0.83274 1.90819 1.71068 1.46891 1.32251 1.48509 1.08414 1.59855 1.15813 1.22132 0.97248 0.97670 0.85862 1.21972 0.98577 1.00359 0.96404 1.21438 0.92042 1.02531 0.98094 1.22146 1.01097 0.97290 0.93128 0.92372 1.20621 0.85076 0.86983 1.02463 1.43804 1.51235 1.13537 1.22268 1.19074 1.13553 0.93230 1.12230 0.91865 1.25161 0.97416 0.96589 1.00165 1.69953 1.40415 1.04263 1.40136 0.86361 0.79809 0.77548 0.82929 1.20882 1.21643 1.21020 1.20883 0.90571 0.95601 0.91121 1.22397 0.99447 0.95428 1.00730 1.21581 0.75856 0.97324 0.99919 0.88541 1.22875 0.87929 0.97349 0.92009 1.67824 1.09648 1.25744 1.14556 0.75281 0.83625 0.83150 0.89845 0.90895 0.92108 0.91237 0.91955 0.90525 0.96251 0.88786 0.93489 0.92486 0.96138 0.91634 0.93047 0.81166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 19.25 29.55 0.57 -0.36 16 2 C -0.15 -1.46 13.43 -38.84 -0.52 -1.98 16 3 C 0.24 2.60 6.59 -84.91 -0.56 2.04 16 4 C -0.15 -1.30 9.77 -39.12 -0.38 -1.68 16 5 C -0.05 -0.42 7.44 -38.93 -0.29 -0.71 16 6 C -0.17 -1.98 5.22 -104.77 -0.55 -2.53 16 7 C 0.56 8.33 7.32 -12.41 -0.09 8.24 16 8 O -0.53 -9.86 16.46 5.30 0.09 -9.78 16 9 N -0.59 -8.48 2.66 -165.78 -0.44 -8.92 16 10 C 0.09 1.05 4.76 -3.72 -0.02 1.04 16 11 C -0.13 -1.66 6.08 -26.59 -0.16 -1.82 16 12 C -0.10 -1.68 4.86 -26.74 -0.13 -1.81 16 13 C -0.12 -2.09 2.52 -90.50 -0.23 -2.32 16 14 H 0.06 1.05 8.14 -51.94 -0.42 0.62 16 15 C 0.18 3.99 4.61 -4.31 -0.02 3.97 16 16 N -0.59 -13.83 2.64 -173.16 -0.46 -14.29 16 17 C -0.25 -6.53 9.59 -15.06 -0.14 -6.67 16 18 H 0.06 1.62 7.85 -52.49 -0.41 1.20 16 19 C 0.01 0.15 5.05 -17.43 -0.09 0.06 16 20 N -0.90 -25.43 11.05 55.49 0.61 -24.81 16 21 Si 0.90 21.03 29.57 -169.99 -5.03 16.01 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.15 2.93 6.51 -3.73 -0.02 2.91 16 26 C -0.14 -2.34 5.01 -26.60 -0.13 -2.48 16 27 C 0.15 2.63 2.65 -67.09 -0.18 2.45 16 28 H 0.10 1.87 7.07 -51.93 -0.37 1.50 16 29 C 0.16 1.92 10.85 -17.17 -0.19 1.73 16 30 N -0.47 -5.89 10.26 -10.79 -0.11 -6.00 16 31 H 0.23 0.56 7.80 -54.09 -0.42 0.14 16 32 H 0.15 0.84 8.06 -52.48 -0.42 0.42 16 33 H 0.15 1.10 6.60 -52.49 -0.35 0.75 16 34 H 0.08 0.77 4.19 -51.93 -0.22 0.56 16 35 H 0.07 0.76 7.23 -51.93 -0.38 0.39 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.08 1.35 6.15 -51.93 -0.32 1.03 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 2.41 6.02 -51.93 -0.31 2.09 16 42 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.06 1.12 7.94 -51.93 -0.41 0.71 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 1.07 5.31 -51.93 -0.28 0.79 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.17 1.93 8.06 -52.48 -0.42 1.51 16 LS Contribution 373.07 15.07 5.62 5.62 Total: -1.00 -31.43 373.07 -9.25 -40.68 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.40 Total: 1.42 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -3.13 Total: 0.07 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.39 Total: -54.02 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.43 -9.25 -40.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021712690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.714 kcal (2) G-P(sol) polarization free energy of solvation -31.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds