Wall clock time and date at job start Tue Mar 31 2020 22:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39721 * 119.58921 * 337.47682 * 3 2 1 5 5 C 1.37974 * 119.19865 * 179.97438 * 4 3 2 6 6 C 1.40237 * 118.40333 * 359.97438 * 5 4 3 7 7 C 1.47668 * 120.44155 * 179.97438 * 6 5 4 8 8 O 1.21580 * 120.00067 * 134.68600 * 7 6 5 9 9 N 1.34773 * 120.00342 * 314.67983 * 7 6 5 10 10 C 1.46947 * 120.84763 * 4.03212 * 9 7 6 11 11 C 1.53150 * 109.02148 * 234.00453 * 10 9 7 12 12 C 1.53115 * 109.47929 * 305.92428 * 11 10 9 13 13 C 1.52861 * 109.34725 * 60.64466 * 12 11 10 14 14 H 1.08988 * 109.25583 * 57.51607 * 13 12 11 15 15 C 1.52778 * 110.20528 * 177.56894 * 13 12 11 16 16 N 1.46221 * 109.95697 * 66.79644 * 15 13 12 17 17 C 1.36940 * 120.97710 * 233.70331 * 16 15 13 18 18 H 1.07995 * 119.99952 * 148.71745 * 17 16 15 19 19 C 1.38813 * 119.99551 * 328.71838 * 17 16 15 20 20 N 1.31623 * 120.00205 * 349.54232 * 19 17 16 21 21 Si 1.86802 * 119.99801 * 169.53316 * 19 17 16 22 22 H 1.48500 * 109.46798 * 60.00513 * 21 19 17 23 23 H 1.48505 * 109.47106 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47383 * 300.00535 * 21 19 17 25 25 C 1.46978 * 118.25571 * 53.48432 * 16 15 13 26 26 C 1.53098 * 108.61456 * 305.90861 * 25 16 15 27 27 C 1.47311 * 120.84735 * 183.74097 * 9 7 6 28 28 H 1.08997 * 110.07387 * 4.93308 * 27 9 7 29 29 C 1.39653 * 119.11617 * 0.02562 * 6 5 4 30 30 N 1.31490 * 120.71259 * 359.97351 * 29 6 5 31 31 H 4.51256 * 14.17617 * 359.97438 * 4 2 1 32 32 H 1.08003 * 120.40419 * 0.27451 * 4 3 2 33 33 H 1.08001 * 120.79808 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.54503 * 353.86172 * 10 9 7 35 35 H 1.08998 * 109.55066 * 114.13821 * 10 9 7 36 36 H 1.08997 * 109.46651 * 65.92344 * 11 10 9 37 37 H 1.08994 * 109.46744 * 185.92496 * 11 10 9 38 38 H 1.08996 * 109.48868 * 180.60676 * 12 11 10 39 39 H 1.08999 * 109.49138 * 300.65790 * 12 11 10 40 40 H 1.08994 * 109.51796 * 187.26320 * 15 13 12 41 41 H 1.08999 * 109.51445 * 307.43105 * 15 13 12 42 42 H 0.97001 * 119.99685 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.60884 * 186.17546 * 25 16 15 44 44 H 1.08998 * 109.75798 * 65.73237 * 25 16 15 45 45 H 1.08994 * 109.45780 * 295.31390 * 26 25 16 46 46 H 1.09007 * 109.45269 * 175.37668 * 26 25 16 47 47 H 1.08004 * 119.64617 * 179.97438 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2964 -1.1214 0.4654 5 6 4.6761 -1.1123 0.4613 6 6 5.3343 0.0312 -0.0139 7 6 6.8096 0.0897 -0.0379 8 8 7.3854 0.5095 -1.0230 9 7 7.5179 -0.3222 1.0321 10 6 6.8466 -0.9141 2.1976 11 6 7.2659 -0.1497 3.4567 12 6 8.7938 -0.1212 3.5516 13 6 9.3642 0.5900 2.3246 14 1 8.9460 1.5947 2.2647 15 6 10.8856 0.6829 2.4283 16 7 11.4740 -0.6531 2.3458 17 6 12.3335 -1.1056 3.3111 18 1 12.3709 -2.1580 3.5505 19 6 13.1564 -0.2114 3.9820 20 7 13.2645 1.0297 3.5571 21 14 14.1102 -0.7694 5.4882 22 1 15.0194 -1.8822 5.1139 23 1 14.9082 0.3658 6.0173 24 1 13.1609 -1.2351 6.5309 25 6 11.1153 -1.5019 1.2008 26 6 9.5894 -1.6022 1.1259 27 6 8.9853 -0.1962 1.0607 28 1 9.3329 0.3310 0.1722 29 6 4.5758 1.1144 -0.4632 30 7 3.2619 1.0683 -0.4437 31 1 -1.0500 -0.0007 0.0008 32 1 2.7567 -1.9873 0.8196 33 1 5.2358 -1.9653 0.8156 34 1 5.7663 -0.8435 2.0710 35 1 7.1363 -1.9606 2.2928 36 1 6.8859 0.8706 3.4057 37 1 6.8565 -0.6464 4.3364 38 1 9.0923 0.4135 4.4533 39 1 9.1749 -1.1416 3.5909 40 1 11.2688 1.3016 1.6168 41 1 11.1589 1.1264 3.3857 42 1 13.8399 1.6543 4.0257 43 1 11.5411 -2.4963 1.3349 44 1 11.4986 -1.0608 0.2807 45 1 9.2155 -2.1173 2.0106 46 1 9.3057 -2.1608 0.2339 47 1 5.0738 1.9995 -0.8306 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021712690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:03 Heat of formation + Delta-G solvation = 71.980978 kcal Electronic energy + Delta-G solvation = -29699.210545 eV Core-core repulsion = 25848.564103 eV Total energy + Delta-G solvation = -3850.646442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.16188 -40.93856 -39.35760 -37.19446 -35.14256 -34.44620 -34.05380 -33.52083 -32.04650 -31.60366 -30.98456 -27.38863 -27.03257 -25.54942 -24.94926 -23.84257 -23.53167 -22.87017 -21.07847 -20.50442 -19.51076 -18.56939 -18.34853 -17.68969 -17.44524 -16.99151 -16.86361 -16.16866 -15.90550 -15.81449 -15.33949 -15.24676 -15.09033 -15.03334 -14.72522 -14.44472 -14.23894 -14.07428 -13.69702 -13.62541 -13.51588 -13.19647 -12.84494 -12.58920 -12.54506 -12.38502 -12.18793 -11.97733 -11.88708 -11.85742 -11.79955 -11.49020 -11.37011 -11.26480 -11.06428 -10.86721 -10.56677 -10.51683 -9.96583 -9.60099 -8.61657 -7.84227 -5.35529 -0.68527 0.06642 1.38343 1.49362 1.50403 1.57255 1.62724 1.75232 2.02313 2.52304 2.86410 2.91421 3.28977 3.32548 3.57427 3.65688 3.69460 3.79322 3.89741 3.94982 3.97736 4.06306 4.08061 4.22199 4.38321 4.45694 4.53492 4.55126 4.62445 4.68305 4.73969 4.83509 4.87881 4.92942 4.99301 5.00871 5.05575 5.11311 5.14285 5.22657 5.33048 5.40942 5.45680 5.55315 5.63311 5.67932 5.73193 6.33648 6.43480 6.46367 6.67407 6.97967 7.18050 7.86694 8.41106 9.21817 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027012 B = 0.002590 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.311027 B =10807.494138 C =11116.731070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.216 4.216 3 C 0.230 3.770 4 C -0.137 4.137 5 C -0.034 4.034 6 C -0.179 4.179 7 C 0.561 3.439 8 O -0.579 6.579 9 N -0.591 5.591 10 C 0.091 3.909 11 C -0.126 4.126 12 C -0.096 4.096 13 C -0.105 4.105 14 H 0.052 0.948 15 C 0.187 3.813 16 N -0.599 5.599 17 C -0.253 4.253 18 H 0.071 0.929 19 C -0.050 4.050 20 N -0.939 5.939 21 Si 0.968 3.032 22 H -0.276 1.276 23 H -0.299 1.299 24 H -0.273 1.273 25 C 0.141 3.859 26 C -0.123 4.123 27 C 0.162 3.838 28 H 0.065 0.935 29 C 0.147 3.853 30 N -0.497 5.497 31 H 0.271 0.729 32 H 0.182 0.818 33 H 0.179 0.821 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.045 0.955 39 H 0.067 0.933 40 H -0.019 1.019 41 H 0.062 0.938 42 H 0.248 0.752 43 H 0.065 0.935 44 H 0.005 0.995 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.903 -7.691 -1.704 27.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.216 4.216 3 C 0.095 3.905 4 C -0.157 4.157 5 C -0.060 4.060 6 C -0.184 4.184 7 C 0.349 3.651 8 O -0.460 6.460 9 N -0.321 5.321 10 C -0.030 4.030 11 C -0.164 4.164 12 C -0.134 4.134 13 C -0.126 4.126 14 H 0.071 0.929 15 C 0.060 3.940 16 N -0.322 5.322 17 C -0.383 4.383 18 H 0.089 0.911 19 C -0.245 4.245 20 N -0.585 5.585 21 Si 0.796 3.204 22 H -0.202 1.202 23 H -0.226 1.226 24 H -0.199 1.199 25 C 0.015 3.985 26 C -0.162 4.162 27 C 0.059 3.941 28 H 0.084 0.916 29 C -0.012 4.012 30 N -0.206 5.206 31 H 0.287 0.713 32 H 0.199 0.801 33 H 0.197 0.803 34 H 0.130 0.870 35 H 0.113 0.887 36 H 0.076 0.924 37 H 0.120 0.880 38 H 0.064 0.936 39 H 0.086 0.914 40 H -0.001 1.001 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.083 0.917 44 H 0.023 0.977 45 H 0.100 0.900 46 H 0.089 0.911 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -25.927 -6.645 -2.433 26.875 hybrid contribution 1.822 0.040 0.673 1.943 sum -24.105 -6.605 -1.760 25.055 Atomic orbital electron populations 1.25981 0.96329 0.94817 0.93493 1.19627 0.91562 1.04962 1.05489 1.17184 0.89241 0.90192 0.93904 1.22306 0.93930 0.99398 1.00018 1.22095 0.94535 0.96991 0.92335 1.20900 0.93187 0.98617 1.05678 1.18408 0.87056 0.77116 0.82503 1.90795 1.72270 1.48839 1.34098 1.48428 1.07007 1.59850 1.16839 1.22446 0.98650 0.98237 0.83705 1.21922 0.95037 1.01064 0.98411 1.21332 0.95169 1.01044 0.95852 1.21908 0.97461 0.97899 0.95366 0.92911 1.20325 0.88281 0.86281 0.99133 1.43991 1.51302 1.13821 1.23076 1.19430 1.13129 0.93528 1.12254 0.91110 1.25922 0.98833 0.96695 1.03079 1.70148 1.41484 1.05399 1.41485 0.85338 0.78500 0.76741 0.79812 1.20224 1.22595 1.19909 1.21015 0.93263 0.95055 0.89212 1.22189 0.96401 0.95321 1.02311 1.21173 0.78168 0.97039 0.97673 0.91645 1.22793 0.88207 0.97612 0.92561 1.67810 1.09566 1.27304 1.15915 0.71277 0.80062 0.80332 0.86992 0.88685 0.92362 0.88040 0.93573 0.91404 1.00076 0.91985 0.94249 0.91671 0.97668 0.90032 0.91140 0.82002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 19.25 74.32 1.43 0.57 16 2 C -0.22 -3.65 13.43 30.02 0.40 -3.25 16 3 C 0.23 4.57 6.59 40.58 0.27 4.84 16 4 C -0.14 -1.86 9.77 22.57 0.22 -1.64 16 5 C -0.03 -0.51 7.44 22.69 0.17 -0.34 16 6 C -0.18 -4.07 5.22 -19.96 -0.10 -4.17 16 7 C 0.56 16.50 7.32 86.73 0.63 17.14 16 8 O -0.58 -22.25 16.46 -3.97 -0.07 -22.31 16 9 N -0.59 -16.04 2.66 -796.67 -2.12 -18.15 16 10 C 0.09 1.70 4.76 86.34 0.41 2.11 16 11 C -0.13 -2.73 6.08 30.68 0.19 -2.54 16 12 C -0.10 -3.03 4.86 30.59 0.15 -2.89 16 13 C -0.11 -3.94 2.52 -10.71 -0.03 -3.97 16 14 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 15 C 0.19 9.04 4.61 86.36 0.40 9.43 16 16 N -0.60 -29.12 2.64 -701.75 -1.85 -30.96 16 17 C -0.25 -13.34 9.59 84.03 0.81 -12.53 16 18 H 0.07 3.57 7.85 -2.91 -0.02 3.55 16 19 C -0.05 -2.74 5.05 84.86 0.43 -2.31 16 20 N -0.94 -55.36 11.05 21.65 0.24 -55.12 16 21 Si 0.97 43.87 29.57 68.60 2.03 45.90 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 C 0.14 5.73 6.51 86.32 0.56 6.29 16 26 C -0.12 -3.96 5.01 30.68 0.15 -3.80 16 27 C 0.16 5.57 2.65 45.09 0.12 5.69 16 28 H 0.07 2.68 7.07 -2.39 -0.02 2.66 16 29 C 0.15 3.62 10.85 85.09 0.92 4.54 16 30 N -0.50 -12.28 10.26 -188.03 -1.93 -14.21 16 31 H 0.27 -0.13 7.80 -4.42 -0.03 -0.17 16 32 H 0.18 1.14 8.06 -2.91 -0.02 1.11 16 33 H 0.18 1.64 6.60 -2.91 -0.02 1.62 16 34 H 0.11 1.54 4.19 -2.39 -0.01 1.53 16 35 H 0.10 1.47 7.23 -2.39 -0.02 1.45 16 36 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 2.27 6.15 -2.39 -0.01 2.26 16 40 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 41 H 0.06 3.39 6.02 -2.39 -0.01 3.38 16 42 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 43 H 0.06 2.52 7.94 -2.39 -0.02 2.50 16 44 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 45 H 0.08 2.41 5.31 -2.39 -0.01 2.40 16 46 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 47 H 0.16 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -74.38 373.07 4.43 -69.95 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.99 Total: 11.74 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 7.13 Total: 13.17 kcal Atomic # 7 Polarization: -112.79 SS G_CDS: -5.66 Total: -118.45 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.07 Total: -22.31 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -74.38 4.43 -69.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021712690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.936 kcal (2) G-P(sol) polarization free energy of solvation -74.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds