Wall clock time and date at job start Tue Mar 31 2020 22:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39728 * 119.58939 * 13.65209 * 3 2 1 5 5 C 1.37984 * 119.19719 * 179.72402 * 4 3 2 6 6 C 1.40239 * 118.39932 * 0.53228 * 5 4 3 7 7 C 1.47668 * 120.43763 * 179.75811 * 6 5 4 8 8 O 1.21574 * 120.00369 * 27.89549 * 7 6 5 9 9 N 1.34777 * 120.00096 * 207.89043 * 7 6 5 10 10 C 1.47228 * 120.90077 * 6.24037 * 9 7 6 11 11 C 1.53132 * 109.03336 * 126.60543 * 10 9 7 12 12 C 1.53146 * 109.61504 * 54.04354 * 11 10 9 13 13 C 1.52817 * 109.26639 * 299.14813 * 12 11 10 14 14 H 1.09009 * 109.47128 * 302.00283 * 13 12 11 15 15 C 1.53058 * 110.34206 * 181.46179 * 13 12 11 16 16 N 1.47065 * 108.37083 * 184.58381 * 15 13 12 17 17 C 1.36933 * 120.47179 * 233.27527 * 16 15 13 18 18 H 1.08002 * 120.00431 * 151.95748 * 17 16 15 19 19 C 1.38820 * 119.99917 * 331.95357 * 17 16 15 20 20 N 1.31621 * 119.99840 * 342.99170 * 19 17 16 21 21 Si 1.86799 * 119.99921 * 162.99516 * 19 17 16 22 22 H 1.48494 * 109.47458 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46832 * 120.00235 * 21 19 17 24 24 H 1.48506 * 109.47119 * 239.99549 * 21 19 17 25 25 C 1.46861 * 119.06183 * 53.29209 * 16 15 13 26 26 C 1.53320 * 109.10127 * 307.35394 * 25 16 15 27 27 C 1.46711 * 120.84882 * 186.32297 * 9 7 6 28 28 H 1.09003 * 109.70711 * 114.66368 * 27 9 7 29 29 C 1.39659 * 119.11848 * 359.48518 * 6 5 4 30 30 N 1.31477 * 120.71178 * 0.25578 * 29 6 5 31 31 H 4.51254 * 14.17764 * 0.02562 * 4 2 1 32 32 H 1.07990 * 120.40631 * 359.97438 * 4 3 2 33 33 H 1.07999 * 120.79576 * 180.27333 * 5 4 3 34 34 H 1.08999 * 109.50718 * 6.76537 * 10 9 7 35 35 H 1.08997 * 109.58434 * 246.49636 * 10 9 7 36 36 H 1.08998 * 109.44699 * 293.99654 * 11 10 9 37 37 H 1.09001 * 109.44141 * 174.08888 * 11 10 9 38 38 H 1.09000 * 109.50133 * 179.20992 * 12 11 10 39 39 H 1.08996 * 109.53813 * 59.10807 * 12 11 10 40 40 H 1.08997 * 109.69220 * 64.85217 * 15 13 12 41 41 H 1.09001 * 109.68885 * 304.31649 * 15 13 12 42 42 H 0.96998 * 119.99870 * 179.97438 * 20 19 17 43 43 H 1.08996 * 109.53171 * 67.23381 * 25 16 15 44 44 H 1.08994 * 109.53857 * 187.38861 * 25 16 15 45 45 H 1.09000 * 109.55868 * 173.94419 * 26 25 16 46 46 H 1.09009 * 109.55447 * 294.26100 * 26 25 16 47 47 H 1.07999 * 119.64021 * 180.22760 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.2964 -1.1798 -0.2868 5 6 4.6762 -1.1686 -0.2902 6 6 5.3343 0.0335 0.0076 7 6 6.8096 0.0950 0.0219 8 8 7.4565 -0.6633 -0.6741 9 7 7.4390 0.9920 0.8066 10 6 6.6849 1.8257 1.7573 11 6 7.2990 1.6732 3.1517 12 6 8.7978 1.9815 3.0899 13 6 9.4771 0.9941 2.1418 14 1 9.2979 -0.0240 2.4880 15 6 10.9839 1.2574 2.0895 16 7 11.5766 0.3605 1.0859 17 6 12.6319 -0.4480 1.4142 18 1 12.7797 -1.3818 0.8920 19 6 13.5119 -0.0674 2.4181 20 7 13.5477 1.1848 2.8219 21 14 14.6453 -1.3324 3.1957 22 1 14.4117 -2.6580 2.5687 23 1 16.0583 -0.9273 2.9841 24 1 14.3674 -1.4170 4.6520 25 6 11.0209 0.3445 -0.2734 26 6 9.5070 0.1154 -0.1939 27 6 8.8942 1.1644 0.7344 28 1 9.1282 2.1617 0.3619 29 6 4.5757 1.1729 0.2848 30 7 3.2619 1.1241 0.2732 31 1 -1.0500 -0.0010 -0.0007 32 1 2.7568 -2.0889 -0.5071 33 1 5.2359 -2.0651 -0.5127 34 1 5.6444 1.5017 1.7797 35 1 6.7364 2.8697 1.4484 36 1 7.1527 0.6517 3.5029 37 1 6.8140 2.3658 3.8395 38 1 9.2303 1.8860 4.0859 39 1 8.9462 2.9976 2.7246 40 1 11.4256 1.0588 3.0660 41 1 11.1659 2.2947 1.8083 42 1 14.1623 1.4507 3.5236 43 1 11.2198 1.2996 -0.7596 44 1 11.4827 -0.4594 -0.8465 45 1 9.0711 0.2090 -1.1885 46 1 9.3091 -0.8813 0.2007 47 1 5.0738 2.1039 0.5116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021712692.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:07 Heat of formation + Delta-G solvation = 112.099321 kcal Electronic energy + Delta-G solvation = -29703.705296 eV Core-core repulsion = 25854.798516 eV Total energy + Delta-G solvation = -3848.906780 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.24955 -39.85146 -37.70031 -36.00603 -34.36248 -33.06676 -32.84644 -32.68685 -31.09276 -30.11405 -29.11030 -25.99846 -25.72576 -24.28734 -23.96505 -22.60400 -22.26600 -20.57172 -19.78859 -19.52189 -19.34668 -17.36080 -16.88704 -16.68110 -16.40880 -15.68423 -15.18832 -14.98722 -14.70479 -14.58740 -14.25324 -14.06990 -13.88115 -13.55350 -13.45516 -13.26858 -12.85277 -12.73721 -12.41302 -12.17611 -12.09042 -11.68262 -11.56279 -11.26223 -11.03839 -10.98018 -10.87508 -10.74911 -10.62504 -10.30802 -10.23325 -10.14602 -10.00684 -9.91771 -9.75699 -9.46559 -9.13681 -8.95213 -8.43641 -8.30745 -6.62115 -5.76776 -3.18182 0.05374 0.83617 2.21627 2.24934 2.88002 3.05725 3.38326 3.46420 3.48819 3.49354 3.64557 4.20741 4.29265 4.48894 4.51864 4.65866 4.75193 4.77007 4.98692 5.08811 5.15160 5.29379 5.31124 5.39849 5.44935 5.51293 5.62562 5.68153 5.70260 5.71633 5.87419 5.94406 6.09605 6.14332 6.23806 6.29422 6.37944 6.43542 6.55953 6.63346 6.78634 6.93656 6.98049 7.00898 7.19245 7.33617 7.40229 7.51789 7.64616 7.83355 8.21219 8.47964 9.23953 9.87576 10.43726 11.31635 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023703 B = 0.002674 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.011409 B =10468.342515 C =10936.120511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.149 4.149 3 C 0.238 3.762 4 C -0.151 4.151 5 C -0.018 4.018 6 C -0.173 4.173 7 C 0.557 3.443 8 O -0.518 6.518 9 N -0.598 5.598 10 C 0.085 3.915 11 C -0.132 4.132 12 C -0.112 4.112 13 C -0.120 4.120 14 H 0.067 0.933 15 C 0.182 3.818 16 N -0.594 5.594 17 C -0.247 4.247 18 H 0.065 0.935 19 C 0.000 4.000 20 N -0.904 5.904 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.289 1.289 25 C 0.138 3.862 26 C -0.116 4.116 27 C 0.157 3.843 28 H 0.069 0.931 29 C 0.125 3.875 30 N -0.472 5.472 31 H 0.231 0.769 32 H 0.146 0.854 33 H 0.152 0.848 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.090 0.910 41 H 0.019 0.981 42 H 0.252 0.748 43 H 0.014 0.986 44 H 0.056 0.944 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.784 0.746 -2.712 23.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.150 4.150 3 C 0.104 3.896 4 C -0.171 4.171 5 C -0.044 4.044 6 C -0.178 4.178 7 C 0.344 3.656 8 O -0.395 6.395 9 N -0.330 5.330 10 C -0.038 4.038 11 C -0.171 4.171 12 C -0.151 4.151 13 C -0.142 4.142 14 H 0.085 0.915 15 C 0.056 3.944 16 N -0.316 5.316 17 C -0.377 4.377 18 H 0.083 0.917 19 C -0.198 4.198 20 N -0.549 5.549 21 Si 0.730 3.270 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.216 1.216 25 C 0.012 3.988 26 C -0.155 4.155 27 C 0.056 3.944 28 H 0.086 0.914 29 C -0.034 4.034 30 N -0.181 5.181 31 H 0.247 0.753 32 H 0.164 0.836 33 H 0.170 0.830 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.037 0.963 42 H 0.062 0.938 43 H 0.032 0.968 44 H 0.074 0.926 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -23.730 1.158 -2.799 23.922 hybrid contribution 0.876 -1.203 0.431 1.549 sum -22.854 -0.045 -2.368 22.977 Atomic orbital electron populations 1.24962 0.95638 0.98083 0.96767 1.19294 0.91038 1.01979 1.02691 1.16737 0.88157 0.89493 0.95234 1.22017 0.94405 0.98958 1.01729 1.21669 0.93556 0.97879 0.91295 1.21344 0.95673 0.96081 1.04691 1.17982 0.86040 0.80876 0.80660 1.90882 1.65474 1.40492 1.42634 1.48246 1.08884 1.37942 1.37911 1.22476 0.96276 0.95213 0.89822 1.21918 0.97333 1.02319 0.95504 1.21495 0.93474 0.99563 1.00531 1.22272 0.99773 0.99228 0.92886 0.91467 1.20759 0.85647 0.92255 0.95760 1.44113 1.35335 1.47408 1.04733 1.19253 1.02166 0.98504 1.17786 0.91679 1.25031 0.97450 0.95604 1.01702 1.70033 1.39094 1.14380 1.31416 0.86248 0.80358 0.81226 0.79137 1.20270 1.21770 1.21622 1.21130 0.91504 0.98276 0.87931 1.22470 0.96218 0.98275 0.98534 1.21402 0.75814 0.99632 0.97535 0.91355 1.23554 0.88613 0.98616 0.92630 1.67807 1.09657 1.27102 1.13515 0.75284 0.83641 0.82983 0.88962 0.90699 0.91694 0.90937 0.91460 0.91963 0.89199 0.96262 0.93761 0.96820 0.92586 0.91031 0.91136 0.80329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 19.25 29.55 0.57 -0.35 16 2 C -0.15 -1.44 13.43 -38.84 -0.52 -1.96 16 3 C 0.24 2.59 6.59 -84.91 -0.56 2.03 16 4 C -0.15 -1.41 9.77 -39.12 -0.38 -1.79 16 5 C -0.02 -0.19 9.71 -38.92 -0.38 -0.57 16 6 C -0.17 -2.08 5.52 -104.76 -0.58 -2.65 16 7 C 0.56 8.26 7.41 -12.41 -0.09 8.17 16 8 O -0.52 -9.24 12.27 5.30 0.07 -9.18 16 9 N -0.60 -8.50 2.97 -166.36 -0.49 -8.99 16 10 C 0.08 0.91 4.70 -3.58 -0.02 0.90 16 11 C -0.13 -1.52 6.07 -26.59 -0.16 -1.68 16 12 C -0.11 -1.63 5.24 -26.75 -0.14 -1.77 16 13 C -0.12 -2.21 2.21 -90.54 -0.20 -2.41 16 14 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 15 C 0.18 4.22 4.63 -3.70 -0.02 4.21 16 16 N -0.59 -15.00 3.00 -172.27 -0.52 -15.52 16 17 C -0.25 -6.87 9.57 -15.06 -0.14 -7.01 16 18 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 19 C 0.00 0.01 4.91 -17.43 -0.09 -0.08 16 20 N -0.90 -26.06 11.19 55.49 0.62 -25.44 16 21 Si 0.90 21.86 29.59 -169.99 -5.03 16.83 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 C 0.14 3.04 6.50 -3.68 -0.02 3.02 16 26 C -0.12 -2.24 3.79 -26.62 -0.10 -2.34 16 27 C 0.16 2.70 2.64 -67.73 -0.18 2.52 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 29 C 0.12 1.35 8.61 -17.17 -0.15 1.20 16 30 N -0.47 -5.55 10.26 -10.79 -0.11 -5.66 16 31 H 0.23 0.54 7.80 -54.09 -0.42 0.12 16 32 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.15 1.50 7.95 -52.49 -0.42 1.08 16 34 H 0.09 0.87 4.10 -51.93 -0.21 0.66 16 35 H 0.07 0.68 8.01 -51.93 -0.42 0.27 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 1.23 7.92 -51.93 -0.41 0.82 16 45 H 0.07 1.37 6.48 -51.93 -0.34 1.03 16 46 H 0.07 1.51 7.12 -51.92 -0.37 1.14 16 47 H 0.18 1.61 5.27 -52.49 -0.28 1.33 16 LS Contribution 371.28 15.07 5.60 5.60 Total: -1.00 -32.59 371.28 -9.56 -42.15 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.53 Total: 0.80 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -3.16 Total: -0.59 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.50 Total: -55.61 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.07 Total: -9.18 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.59 -9.56 -42.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021712692.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.245 kcal (2) G-P(sol) polarization free energy of solvation -32.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds