Wall clock time and date at job start Tue Mar 31 2020 22:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39728 * 119.58939 * 13.65209 * 3 2 1 5 5 C 1.37984 * 119.19719 * 179.72402 * 4 3 2 6 6 C 1.40239 * 118.39932 * 0.53228 * 5 4 3 7 7 C 1.47668 * 120.43763 * 179.75811 * 6 5 4 8 8 O 1.21574 * 120.00369 * 27.89549 * 7 6 5 9 9 N 1.34777 * 120.00096 * 207.89043 * 7 6 5 10 10 C 1.47228 * 120.90077 * 6.24037 * 9 7 6 11 11 C 1.53132 * 109.03336 * 126.60543 * 10 9 7 12 12 C 1.53146 * 109.61504 * 54.04354 * 11 10 9 13 13 C 1.52817 * 109.26639 * 299.14813 * 12 11 10 14 14 H 1.09009 * 109.47128 * 302.00283 * 13 12 11 15 15 C 1.53058 * 110.34206 * 181.46179 * 13 12 11 16 16 N 1.47065 * 108.37083 * 184.58381 * 15 13 12 17 17 C 1.36933 * 120.47179 * 233.27527 * 16 15 13 18 18 H 1.08002 * 120.00431 * 151.95748 * 17 16 15 19 19 C 1.38820 * 119.99917 * 331.95357 * 17 16 15 20 20 N 1.31621 * 119.99840 * 342.99170 * 19 17 16 21 21 Si 1.86799 * 119.99921 * 162.99516 * 19 17 16 22 22 H 1.48494 * 109.47458 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46832 * 120.00235 * 21 19 17 24 24 H 1.48506 * 109.47119 * 239.99549 * 21 19 17 25 25 C 1.46861 * 119.06183 * 53.29209 * 16 15 13 26 26 C 1.53320 * 109.10127 * 307.35394 * 25 16 15 27 27 C 1.46711 * 120.84882 * 186.32297 * 9 7 6 28 28 H 1.09003 * 109.70711 * 114.66368 * 27 9 7 29 29 C 1.39659 * 119.11848 * 359.48518 * 6 5 4 30 30 N 1.31477 * 120.71178 * 0.25578 * 29 6 5 31 31 H 4.51254 * 14.17764 * 0.02562 * 4 2 1 32 32 H 1.07990 * 120.40631 * 359.97438 * 4 3 2 33 33 H 1.07999 * 120.79576 * 180.27333 * 5 4 3 34 34 H 1.08999 * 109.50718 * 6.76537 * 10 9 7 35 35 H 1.08997 * 109.58434 * 246.49636 * 10 9 7 36 36 H 1.08998 * 109.44699 * 293.99654 * 11 10 9 37 37 H 1.09001 * 109.44141 * 174.08888 * 11 10 9 38 38 H 1.09000 * 109.50133 * 179.20992 * 12 11 10 39 39 H 1.08996 * 109.53813 * 59.10807 * 12 11 10 40 40 H 1.08997 * 109.69220 * 64.85217 * 15 13 12 41 41 H 1.09001 * 109.68885 * 304.31649 * 15 13 12 42 42 H 0.96998 * 119.99870 * 179.97438 * 20 19 17 43 43 H 1.08996 * 109.53171 * 67.23381 * 25 16 15 44 44 H 1.08994 * 109.53857 * 187.38861 * 25 16 15 45 45 H 1.09000 * 109.55868 * 173.94419 * 26 25 16 46 46 H 1.09009 * 109.55447 * 294.26100 * 26 25 16 47 47 H 1.07999 * 119.64021 * 180.22760 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.2964 -1.1798 -0.2868 5 6 4.6762 -1.1686 -0.2902 6 6 5.3343 0.0335 0.0076 7 6 6.8096 0.0950 0.0219 8 8 7.4565 -0.6633 -0.6741 9 7 7.4390 0.9920 0.8066 10 6 6.6849 1.8257 1.7573 11 6 7.2990 1.6732 3.1517 12 6 8.7978 1.9815 3.0899 13 6 9.4771 0.9941 2.1418 14 1 9.2979 -0.0240 2.4880 15 6 10.9839 1.2574 2.0895 16 7 11.5766 0.3605 1.0859 17 6 12.6319 -0.4480 1.4142 18 1 12.7797 -1.3818 0.8920 19 6 13.5119 -0.0674 2.4181 20 7 13.5477 1.1848 2.8219 21 14 14.6453 -1.3324 3.1957 22 1 14.4117 -2.6580 2.5687 23 1 16.0583 -0.9273 2.9841 24 1 14.3674 -1.4170 4.6520 25 6 11.0209 0.3445 -0.2734 26 6 9.5070 0.1154 -0.1939 27 6 8.8942 1.1644 0.7344 28 1 9.1282 2.1617 0.3619 29 6 4.5757 1.1729 0.2848 30 7 3.2619 1.1241 0.2732 31 1 -1.0500 -0.0010 -0.0007 32 1 2.7568 -2.0889 -0.5071 33 1 5.2359 -2.0651 -0.5127 34 1 5.6444 1.5017 1.7797 35 1 6.7364 2.8697 1.4484 36 1 7.1527 0.6517 3.5029 37 1 6.8140 2.3658 3.8395 38 1 9.2303 1.8860 4.0859 39 1 8.9462 2.9976 2.7246 40 1 11.4256 1.0588 3.0660 41 1 11.1659 2.2947 1.8083 42 1 14.1623 1.4507 3.5236 43 1 11.2198 1.2996 -0.7596 44 1 11.4827 -0.4594 -0.8465 45 1 9.0711 0.2090 -1.1885 46 1 9.3091 -0.8813 0.2007 47 1 5.0738 2.1039 0.5116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021712692.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:06 Heat of formation + Delta-G solvation = 92.863591 kcal Electronic energy + Delta-G solvation = -29704.539420 eV Core-core repulsion = 25854.798516 eV Total energy + Delta-G solvation = -3849.740904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.28008 -40.89817 -39.07393 -37.48148 -35.25316 -34.40044 -34.21342 -33.66075 -32.37286 -31.41587 -30.70420 -27.39624 -27.07201 -25.54442 -24.84893 -24.08913 -23.75654 -21.80922 -21.17440 -20.60126 -20.41322 -18.73026 -18.35804 -17.77824 -17.12978 -16.97272 -16.62759 -16.33659 -15.87227 -15.74593 -15.53900 -15.28388 -15.10068 -15.04776 -14.84526 -14.35345 -14.10354 -13.97583 -13.80230 -13.58202 -13.38080 -13.20877 -12.86613 -12.72897 -12.53574 -12.39680 -12.15255 -12.05325 -11.98620 -11.87721 -11.75339 -11.57605 -11.50361 -11.08364 -11.01974 -10.85139 -10.58845 -10.24950 -9.90049 -9.56466 -8.66426 -7.89023 -5.34257 -0.74955 0.06206 1.41375 1.43116 1.44980 1.55974 1.63323 1.79947 2.10254 2.49047 2.84891 2.90281 3.23592 3.31633 3.51231 3.61636 3.69382 3.81475 3.86450 3.90610 3.96637 4.05160 4.07595 4.27623 4.30561 4.43543 4.48963 4.58181 4.64072 4.66814 4.75092 4.82454 4.84921 4.90346 4.94488 5.01362 5.02433 5.10553 5.15784 5.27694 5.37829 5.40461 5.44124 5.51238 5.59108 5.65592 5.76221 6.35033 6.39252 6.45670 6.62924 7.05923 7.13495 7.83749 8.34974 9.16633 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023703 B = 0.002674 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.011409 B =10468.342515 C =10936.120511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.216 4.216 3 C 0.235 3.765 4 C -0.146 4.146 5 C -0.021 4.021 6 C -0.189 4.189 7 C 0.556 3.444 8 O -0.558 6.558 9 N -0.597 5.597 10 C 0.081 3.919 11 C -0.125 4.125 12 C -0.109 4.109 13 C -0.107 4.107 14 H 0.041 0.959 15 C 0.191 3.809 16 N -0.613 5.613 17 C -0.264 4.264 18 H 0.058 0.942 19 C -0.047 4.047 20 N -0.930 5.930 21 Si 0.965 3.035 22 H -0.272 1.272 23 H -0.289 1.289 24 H -0.287 1.287 25 C 0.136 3.864 26 C -0.095 4.095 27 C 0.165 3.835 28 H 0.076 0.924 29 C 0.132 3.868 30 N -0.491 5.491 31 H 0.272 0.728 32 H 0.172 0.828 33 H 0.154 0.846 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.054 0.946 37 H 0.108 0.892 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.005 0.995 42 H 0.251 0.749 43 H 0.016 0.984 44 H 0.047 0.953 45 H 0.076 0.924 46 H 0.045 0.955 47 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.371 1.264 -2.324 27.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.217 4.217 3 C 0.101 3.899 4 C -0.165 4.165 5 C -0.047 4.047 6 C -0.194 4.194 7 C 0.345 3.655 8 O -0.438 6.438 9 N -0.328 5.328 10 C -0.040 4.040 11 C -0.163 4.163 12 C -0.147 4.147 13 C -0.128 4.128 14 H 0.060 0.940 15 C 0.065 3.935 16 N -0.336 5.336 17 C -0.395 4.395 18 H 0.076 0.924 19 C -0.243 4.243 20 N -0.576 5.576 21 Si 0.793 3.207 22 H -0.197 1.197 23 H -0.216 1.216 24 H -0.213 1.213 25 C 0.010 3.990 26 C -0.134 4.134 27 C 0.063 3.937 28 H 0.094 0.906 29 C -0.026 4.026 30 N -0.200 5.200 31 H 0.288 0.712 32 H 0.189 0.811 33 H 0.171 0.829 34 H 0.129 0.871 35 H 0.121 0.879 36 H 0.073 0.927 37 H 0.126 0.874 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.023 0.977 42 H 0.061 0.939 43 H 0.034 0.966 44 H 0.065 0.935 45 H 0.095 0.905 46 H 0.064 0.936 47 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -27.360 1.688 -2.405 27.517 hybrid contribution 1.845 -1.377 0.261 2.317 sum -25.515 0.310 -2.144 25.607 Atomic orbital electron populations 1.25985 0.96318 0.94954 0.93165 1.19592 0.91509 1.04934 1.05648 1.17109 0.89237 0.89539 0.94015 1.22233 0.93711 0.99702 1.00887 1.21797 0.94288 0.97619 0.90953 1.21084 0.93654 0.97392 1.07240 1.18380 0.87227 0.80007 0.79869 1.90850 1.66630 1.42034 1.44277 1.48209 1.07560 1.38427 1.38585 1.22800 0.96576 0.96157 0.88449 1.21889 0.94899 1.02697 0.96784 1.21468 0.95481 0.98817 0.98916 1.21994 0.96801 0.99001 0.94988 0.94002 1.20573 0.88558 0.90915 0.93458 1.44387 1.35365 1.47473 1.06383 1.19484 1.03067 0.98746 1.18168 0.92431 1.25744 0.99045 0.97345 1.02146 1.70167 1.39840 1.15845 1.31759 0.85253 0.78274 0.79125 0.78077 1.19676 1.21595 1.21304 1.21230 0.93281 0.97990 0.86499 1.22188 0.94203 0.97713 0.99344 1.21074 0.77908 0.98933 0.95809 0.90639 1.23744 0.88428 0.98691 0.91787 1.67871 1.09783 1.27809 1.14516 0.71230 0.81073 0.82878 0.87053 0.87877 0.92748 0.87358 0.92128 0.90762 0.92542 0.97728 0.93947 0.96560 0.93464 0.90528 0.93602 0.78546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 19.25 74.32 1.43 0.60 16 2 C -0.22 -3.63 13.43 30.02 0.40 -3.23 16 3 C 0.24 4.69 6.59 40.58 0.27 4.96 16 4 C -0.15 -2.48 9.77 22.57 0.22 -2.26 16 5 C -0.02 -0.42 9.71 22.70 0.22 -0.20 16 6 C -0.19 -4.34 5.52 -19.96 -0.11 -4.45 16 7 C 0.56 16.32 7.41 86.73 0.64 16.96 16 8 O -0.56 -20.40 12.27 -3.95 -0.05 -20.44 16 9 N -0.60 -16.37 2.97 -798.50 -2.38 -18.74 16 10 C 0.08 1.52 4.70 86.28 0.41 1.92 16 11 C -0.12 -2.54 6.07 30.69 0.19 -2.36 16 12 C -0.11 -3.05 5.24 30.58 0.16 -2.89 16 13 C -0.11 -4.01 2.21 -10.74 -0.02 -4.03 16 14 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 15 C 0.19 9.23 4.63 86.29 0.40 9.63 16 16 N -0.61 -32.38 3.00 -698.93 -2.10 -34.48 16 17 C -0.26 -15.26 9.57 84.04 0.80 -14.46 16 18 H 0.06 3.33 7.88 -2.91 -0.02 3.30 16 19 C -0.05 -2.70 4.91 84.86 0.42 -2.28 16 20 N -0.93 -55.28 11.19 21.65 0.24 -55.03 16 21 Si 0.96 46.05 29.59 68.60 2.03 48.08 16 22 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 24 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 25 C 0.14 6.23 6.50 86.42 0.56 6.80 16 26 C -0.10 -3.82 3.79 30.67 0.12 -3.70 16 27 C 0.17 5.68 2.64 45.01 0.12 5.80 16 28 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 29 C 0.13 2.60 8.61 85.09 0.73 3.34 16 30 N -0.49 -10.60 10.26 -188.03 -1.93 -12.53 16 31 H 0.27 -0.20 7.80 -4.42 -0.03 -0.24 16 32 H 0.17 1.89 8.06 -2.92 -0.02 1.87 16 33 H 0.15 3.01 7.95 -2.91 -0.02 2.99 16 34 H 0.11 1.76 4.10 -2.39 -0.01 1.75 16 35 H 0.10 1.44 8.01 -2.39 -0.02 1.42 16 36 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 41 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 43 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.05 2.19 7.92 -2.39 -0.02 2.17 16 45 H 0.08 3.00 6.48 -2.39 -0.02 2.98 16 46 H 0.05 2.06 7.12 -2.38 -0.02 2.04 16 47 H 0.20 2.95 5.27 -2.91 -0.02 2.94 16 Total: -1.00 -74.87 371.28 3.75 -71.12 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.98 Total: 11.88 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 6.95 Total: 10.15 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -6.16 Total: -120.78 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.05 Total: -20.44 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -74.87 3.75 -71.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021712692.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.979 kcal (2) G-P(sol) polarization free energy of solvation -74.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds