Wall clock time and date at job start Tue Mar 31 2020 22:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39994 * 120.46290 * 122.50245 * 3 2 1 5 5 C 1.38209 * 118.37017 * 179.97438 * 4 3 2 6 6 C 1.39489 * 119.20713 * 0.02562 * 5 4 3 7 7 C 1.47996 * 119.57137 * 179.97438 * 6 5 4 8 8 O 1.21545 * 119.99767 * 23.13728 * 7 6 5 9 9 N 1.34768 * 120.00096 * 203.14049 * 7 6 5 10 10 C 1.47068 * 120.84730 * 359.38788 * 9 7 6 11 11 C 1.53131 * 109.04600 * 126.58107 * 10 9 7 12 12 C 1.53146 * 109.62379 * 53.99364 * 11 10 9 13 13 C 1.52820 * 109.26393 * 299.15788 * 12 11 10 14 14 H 1.09005 * 109.47046 * 302.00261 * 13 12 11 15 15 C 1.53068 * 110.34279 * 181.45988 * 13 12 11 16 16 N 1.47081 * 108.32830 * 184.56777 * 15 13 12 17 17 C 1.36932 * 120.46763 * 233.33577 * 16 15 13 18 18 H 1.07999 * 120.00131 * 142.99678 * 17 16 15 19 19 C 1.38815 * 120.00387 * 323.00005 * 17 16 15 20 20 N 1.31624 * 119.99478 * 345.69282 * 19 17 16 21 21 Si 1.86791 * 120.00242 * 165.69033 * 19 17 16 22 22 H 1.48506 * 109.47109 * 89.99855 * 21 19 17 23 23 H 1.48502 * 109.47286 * 209.99907 * 21 19 17 24 24 H 1.48506 * 109.47521 * 330.00225 * 21 19 17 25 25 C 1.46867 * 119.06049 * 53.32466 * 16 15 13 26 26 C 1.53319 * 109.09368 * 307.33515 * 25 16 15 27 27 C 1.46721 * 120.84775 * 179.39386 * 9 7 6 28 28 H 1.08999 * 109.53266 * 114.79746 * 27 9 7 29 29 N 1.32825 * 120.86260 * 0.24795 * 6 5 4 30 30 C 1.31295 * 121.78363 * 359.48080 * 29 6 5 31 31 H 4.52950 * 13.94615 * 0.02562 * 4 2 1 32 32 H 1.08003 * 120.81252 * 359.97438 * 4 3 2 33 33 H 1.08004 * 120.39973 * 180.02562 * 5 4 3 34 34 H 1.09004 * 109.54186 * 6.71396 * 10 9 7 35 35 H 1.08996 * 109.54728 * 246.45059 * 10 9 7 36 36 H 1.08999 * 109.44554 * 293.94797 * 11 10 9 37 37 H 1.09003 * 109.42129 * 174.02462 * 11 10 9 38 38 H 1.08996 * 109.50695 * 179.22157 * 12 11 10 39 39 H 1.09002 * 109.50178 * 59.08773 * 12 11 10 40 40 H 1.09000 * 109.68550 * 304.27179 * 15 13 12 41 41 H 1.09000 * 109.68692 * 64.84769 * 15 13 12 42 42 H 0.96997 * 119.99462 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.53044 * 187.45345 * 25 16 15 44 44 H 1.08997 * 109.59916 * 67.25812 * 25 16 15 45 45 H 1.08998 * 109.56124 * 294.26587 * 26 25 16 46 46 H 1.09004 * 109.55523 * 173.95433 * 26 25 16 47 47 H 1.08006 * 119.64925 * 180.24870 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3154 0.6494 -1.0177 5 6 4.6966 0.6233 -0.9748 6 6 5.3327 -0.0436 0.0723 7 6 6.8113 -0.0770 0.1258 8 8 7.4595 0.7778 -0.4456 9 7 7.4389 -1.0552 0.8080 10 6 6.6729 -2.0911 1.5171 11 6 7.1578 -3.4706 1.0622 12 6 8.6752 -3.5682 1.2445 13 6 9.3556 -2.5000 0.3892 14 1 9.0743 -2.6371 -0.6550 15 6 10.8770 -2.5990 0.5250 16 7 11.4816 -1.4873 -0.2247 17 6 12.4429 -1.7286 -1.1694 18 1 12.4705 -1.1399 -2.0744 19 6 13.3821 -2.7300 -0.9641 20 7 13.5336 -3.2545 0.2336 21 14 14.4305 -3.3333 -2.3874 22 1 15.6743 -2.5255 -2.4632 23 1 14.7797 -4.7610 -2.1747 24 1 13.6713 -3.1931 -3.6560 25 6 11.0393 -0.1149 0.0543 26 6 9.5112 -0.0490 -0.0515 27 6 8.9040 -1.1138 0.8622 28 1 9.2374 -0.9520 1.8873 29 7 4.6286 -0.6536 1.0191 30 6 3.3157 -0.6474 1.0169 31 1 -1.0501 0.0001 0.0008 32 1 2.7961 1.1577 -1.8167 33 1 5.2766 1.1134 -1.7429 34 1 5.6130 -1.9829 1.2864 35 1 6.8260 -1.9869 2.5912 36 1 6.9087 -3.6143 0.0108 37 1 6.6703 -4.2412 1.6593 38 1 9.0164 -4.5554 0.9331 39 1 8.9267 -3.4094 2.2931 40 1 11.1572 -2.5285 1.5760 41 1 11.2212 -3.5486 0.1154 42 1 14.1896 -3.9545 0.3770 43 1 11.4845 0.5660 -0.6712 44 1 11.3477 0.1714 1.0598 45 1 9.2083 -0.2364 -1.0817 46 1 9.1662 0.9375 0.2581 47 1 2.7777 -1.1514 1.8063 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021716636.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:09 Heat of formation + Delta-G solvation = 105.370471 kcal Electronic energy + Delta-G solvation = -29690.724009 eV Core-core repulsion = 25841.525444 eV Total energy + Delta-G solvation = -3849.198565 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.16299 -39.76788 -37.60443 -35.80756 -34.74979 -32.97425 -32.60957 -32.42892 -31.02739 -30.04277 -29.11320 -25.93229 -25.43889 -24.11059 -24.02421 -22.48960 -22.26903 -20.59089 -19.60400 -19.48349 -19.28730 -17.12857 -17.05047 -16.61105 -16.08124 -15.62430 -15.29078 -15.06197 -14.81586 -14.46617 -14.13471 -13.95494 -13.84192 -13.58890 -13.39134 -13.17227 -12.71980 -12.60157 -12.36008 -12.20702 -12.07419 -11.91003 -11.50449 -11.35330 -10.98036 -10.88550 -10.78652 -10.72157 -10.65740 -10.25642 -10.20064 -10.03216 -10.01848 -9.77423 -9.54689 -9.29114 -9.15352 -8.81280 -8.39478 -8.17301 -6.44599 -5.73648 -3.24515 0.03395 0.80410 2.20482 2.26266 2.98143 3.06506 3.40048 3.46648 3.49955 3.57608 3.68462 3.94785 4.35424 4.41566 4.53892 4.70523 4.79078 5.09192 5.21072 5.24232 5.30459 5.37840 5.45097 5.48111 5.54442 5.63962 5.68477 5.72143 5.85713 5.92568 6.00481 6.09971 6.21183 6.28950 6.36065 6.47119 6.47606 6.52932 6.63260 6.70305 6.87247 6.97499 7.02052 7.10148 7.24767 7.30660 7.36355 7.61440 7.66633 7.88479 8.31340 8.57941 9.28542 9.89502 10.52296 11.33766 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023011 B = 0.002682 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.542760 B =10436.801784 C =10898.137235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.154 4.154 3 C -0.026 4.026 4 C -0.057 4.057 5 C -0.111 4.111 6 C 0.096 3.904 7 C 0.562 3.438 8 O -0.521 6.521 9 N -0.581 5.581 10 C 0.079 3.921 11 C -0.134 4.134 12 C -0.113 4.113 13 C -0.119 4.119 14 H 0.066 0.934 15 C 0.188 3.812 16 N -0.591 5.591 17 C -0.256 4.256 18 H 0.060 0.940 19 C 0.010 3.990 20 N -0.899 5.899 21 Si 0.899 3.101 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.139 3.861 26 C -0.120 4.120 27 C 0.155 3.845 28 H 0.068 0.932 29 N -0.446 5.446 30 C 0.117 3.883 31 H 0.227 0.773 32 H 0.145 0.855 33 H 0.154 0.846 34 H 0.132 0.868 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.022 0.978 41 H 0.075 0.925 42 H 0.253 0.747 43 H 0.055 0.945 44 H 0.014 0.986 45 H 0.065 0.935 46 H 0.079 0.921 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.778 3.507 2.504 26.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.155 4.155 3 C -0.029 4.029 4 C -0.082 4.082 5 C -0.131 4.131 6 C -0.041 4.041 7 C 0.348 3.652 8 O -0.398 6.398 9 N -0.311 5.311 10 C -0.044 4.044 11 C -0.172 4.172 12 C -0.152 4.152 13 C -0.140 4.140 14 H 0.084 0.916 15 C 0.061 3.939 16 N -0.314 5.314 17 C -0.386 4.386 18 H 0.077 0.923 19 C -0.190 4.190 20 N -0.542 5.542 21 Si 0.729 3.271 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.204 1.204 25 C 0.013 3.987 26 C -0.159 4.159 27 C 0.054 3.946 28 H 0.086 0.914 29 N -0.157 5.157 30 C -0.042 4.042 31 H 0.244 0.756 32 H 0.163 0.837 33 H 0.172 0.828 34 H 0.148 0.852 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.040 0.960 41 H 0.093 0.907 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.032 0.968 45 H 0.083 0.917 46 H 0.097 0.903 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -24.765 3.417 2.914 25.169 hybrid contribution -0.098 -0.181 -1.222 1.239 sum -24.863 3.236 1.692 25.129 Atomic orbital electron populations 1.24958 0.95753 0.98335 0.98389 1.19684 0.91580 1.02071 1.02116 1.17113 0.87974 1.00600 0.97180 1.21681 0.93521 0.95851 0.97187 1.22052 0.94414 0.97781 0.98886 1.21687 0.95210 0.95082 0.92168 1.17876 0.85109 0.82485 0.79750 1.90874 1.64245 1.39026 1.45660 1.48185 1.07757 1.26140 1.49034 1.22743 0.99357 0.86110 0.96156 1.21958 0.97156 0.96705 1.01429 1.21515 0.93814 0.99597 1.00248 1.22259 1.00120 0.92522 0.99137 0.91577 1.20644 0.85262 0.93014 0.94964 1.43999 1.43424 0.99442 1.44522 1.19085 1.05098 1.17923 0.96483 0.92262 1.25270 0.96658 1.01191 0.95872 1.70020 1.35959 1.28694 1.19550 0.86360 0.80498 0.77877 0.82379 1.21282 1.21605 1.20408 1.21144 0.91729 0.88146 0.97706 1.22519 0.96494 0.97576 0.99283 1.21407 0.76132 0.97327 0.99745 0.91412 1.67728 1.07579 1.15549 1.24819 1.23104 0.89461 0.95365 0.96261 0.75619 0.83676 0.82792 0.85172 0.91736 0.92252 0.91360 0.91808 0.92095 0.96037 0.90711 0.93693 0.92622 0.96815 0.91679 0.90320 0.81569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.89 19.25 29.55 0.57 -0.32 16 2 C -0.15 -1.20 13.28 -38.84 -0.52 -1.72 16 3 C -0.03 -0.23 5.75 -106.68 -0.61 -0.84 16 4 C -0.06 -0.49 9.89 -38.93 -0.39 -0.87 16 5 C -0.11 -1.18 9.60 -39.13 -0.38 -1.56 16 6 C 0.10 1.23 6.44 -82.97 -0.53 0.69 16 7 C 0.56 9.03 7.53 -12.26 -0.09 8.94 16 8 O -0.52 -9.62 12.11 5.33 0.06 -9.55 16 9 N -0.58 -9.27 2.97 -166.37 -0.49 -9.77 16 10 C 0.08 1.03 5.99 -3.66 -0.02 1.01 16 11 C -0.13 -1.75 6.07 -26.59 -0.16 -1.91 16 12 C -0.11 -1.79 5.24 -26.75 -0.14 -1.93 16 13 C -0.12 -2.30 2.21 -90.54 -0.20 -2.50 16 14 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 15 C 0.19 4.48 4.58 -3.69 -0.02 4.46 16 16 N -0.59 -15.36 2.94 -172.24 -0.51 -15.87 16 17 C -0.26 -7.24 9.47 -15.06 -0.14 -7.38 16 18 H 0.06 1.67 7.87 -52.49 -0.41 1.26 16 19 C 0.01 0.27 4.92 -17.43 -0.09 0.19 16 20 N -0.90 -26.44 11.72 55.49 0.65 -25.79 16 21 Si 0.90 22.05 29.58 -169.99 -5.03 17.02 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.14 3.18 6.50 -3.68 -0.02 3.16 16 26 C -0.12 -2.42 3.80 -26.63 -0.10 -2.52 16 27 C 0.16 2.87 2.64 -67.73 -0.18 2.69 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 29 N -0.45 -5.02 6.38 -9.49 -0.06 -5.08 16 30 C 0.12 1.04 10.91 -17.15 -0.19 0.86 16 31 H 0.23 0.40 7.80 -54.09 -0.42 -0.02 16 32 H 0.15 0.88 8.06 -52.48 -0.42 0.45 16 33 H 0.15 1.57 7.80 -52.48 -0.41 1.16 16 34 H 0.13 1.57 4.03 -76.43 -0.31 1.26 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 1.98 6.69 -51.93 -0.35 1.63 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.06 1.27 7.93 -51.93 -0.41 0.86 16 44 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 1.43 7.33 -51.93 -0.38 1.05 16 46 H 0.08 1.58 6.25 -51.93 -0.32 1.25 16 47 H 0.17 1.03 8.06 -52.48 -0.42 0.60 16 LS Contribution 374.51 15.07 5.64 5.64 Total: -1.00 -32.47 374.51 -9.74 -42.21 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.80 Total: 0.74 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -3.21 Total: 0.44 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -0.41 Total: -56.50 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.06 Total: -9.55 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.47 -9.74 -42.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021716636.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.585 kcal (2) G-P(sol) polarization free energy of solvation -32.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds