Wall clock time and date at job start Tue Mar 31 2020 22:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39994 * 120.46290 * 122.50245 * 3 2 1 5 5 C 1.38209 * 118.37017 * 179.97438 * 4 3 2 6 6 C 1.39489 * 119.20713 * 0.02562 * 5 4 3 7 7 C 1.47996 * 119.57137 * 179.97438 * 6 5 4 8 8 O 1.21545 * 119.99767 * 23.13728 * 7 6 5 9 9 N 1.34768 * 120.00096 * 203.14049 * 7 6 5 10 10 C 1.47068 * 120.84730 * 359.38788 * 9 7 6 11 11 C 1.53131 * 109.04600 * 126.58107 * 10 9 7 12 12 C 1.53146 * 109.62379 * 53.99364 * 11 10 9 13 13 C 1.52820 * 109.26393 * 299.15788 * 12 11 10 14 14 H 1.09005 * 109.47046 * 302.00261 * 13 12 11 15 15 C 1.53068 * 110.34279 * 181.45988 * 13 12 11 16 16 N 1.47081 * 108.32830 * 184.56777 * 15 13 12 17 17 C 1.36932 * 120.46763 * 233.33577 * 16 15 13 18 18 H 1.07999 * 120.00131 * 142.99678 * 17 16 15 19 19 C 1.38815 * 120.00387 * 323.00005 * 17 16 15 20 20 N 1.31624 * 119.99478 * 345.69282 * 19 17 16 21 21 Si 1.86791 * 120.00242 * 165.69033 * 19 17 16 22 22 H 1.48506 * 109.47109 * 89.99855 * 21 19 17 23 23 H 1.48502 * 109.47286 * 209.99907 * 21 19 17 24 24 H 1.48506 * 109.47521 * 330.00225 * 21 19 17 25 25 C 1.46867 * 119.06049 * 53.32466 * 16 15 13 26 26 C 1.53319 * 109.09368 * 307.33515 * 25 16 15 27 27 C 1.46721 * 120.84775 * 179.39386 * 9 7 6 28 28 H 1.08999 * 109.53266 * 114.79746 * 27 9 7 29 29 N 1.32825 * 120.86260 * 0.24795 * 6 5 4 30 30 C 1.31295 * 121.78363 * 359.48080 * 29 6 5 31 31 H 4.52950 * 13.94615 * 0.02562 * 4 2 1 32 32 H 1.08003 * 120.81252 * 359.97438 * 4 3 2 33 33 H 1.08004 * 120.39973 * 180.02562 * 5 4 3 34 34 H 1.09004 * 109.54186 * 6.71396 * 10 9 7 35 35 H 1.08996 * 109.54728 * 246.45059 * 10 9 7 36 36 H 1.08999 * 109.44554 * 293.94797 * 11 10 9 37 37 H 1.09003 * 109.42129 * 174.02462 * 11 10 9 38 38 H 1.08996 * 109.50695 * 179.22157 * 12 11 10 39 39 H 1.09002 * 109.50178 * 59.08773 * 12 11 10 40 40 H 1.09000 * 109.68550 * 304.27179 * 15 13 12 41 41 H 1.09000 * 109.68692 * 64.84769 * 15 13 12 42 42 H 0.96997 * 119.99462 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.53044 * 187.45345 * 25 16 15 44 44 H 1.08997 * 109.59916 * 67.25812 * 25 16 15 45 45 H 1.08998 * 109.56124 * 294.26587 * 26 25 16 46 46 H 1.09004 * 109.55523 * 173.95433 * 26 25 16 47 47 H 1.08006 * 119.64925 * 180.24870 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3154 0.6494 -1.0177 5 6 4.6966 0.6233 -0.9748 6 6 5.3327 -0.0436 0.0723 7 6 6.8113 -0.0770 0.1258 8 8 7.4595 0.7778 -0.4456 9 7 7.4389 -1.0552 0.8080 10 6 6.6729 -2.0911 1.5171 11 6 7.1578 -3.4706 1.0622 12 6 8.6752 -3.5682 1.2445 13 6 9.3556 -2.5000 0.3892 14 1 9.0743 -2.6371 -0.6550 15 6 10.8770 -2.5990 0.5250 16 7 11.4816 -1.4873 -0.2247 17 6 12.4429 -1.7286 -1.1694 18 1 12.4705 -1.1399 -2.0744 19 6 13.3821 -2.7300 -0.9641 20 7 13.5336 -3.2545 0.2336 21 14 14.4305 -3.3333 -2.3874 22 1 15.6743 -2.5255 -2.4632 23 1 14.7797 -4.7610 -2.1747 24 1 13.6713 -3.1931 -3.6560 25 6 11.0393 -0.1149 0.0543 26 6 9.5112 -0.0490 -0.0515 27 6 8.9040 -1.1138 0.8622 28 1 9.2374 -0.9520 1.8873 29 7 4.6286 -0.6536 1.0191 30 6 3.3157 -0.6474 1.0169 31 1 -1.0501 0.0001 0.0008 32 1 2.7961 1.1577 -1.8167 33 1 5.2766 1.1134 -1.7429 34 1 5.6130 -1.9829 1.2864 35 1 6.8260 -1.9869 2.5912 36 1 6.9087 -3.6143 0.0108 37 1 6.6703 -4.2412 1.6593 38 1 9.0164 -4.5554 0.9331 39 1 8.9267 -3.4094 2.2931 40 1 11.1572 -2.5285 1.5760 41 1 11.2212 -3.5486 0.1154 42 1 14.1896 -3.9545 0.3770 43 1 11.4845 0.5660 -0.6712 44 1 11.3477 0.1714 1.0598 45 1 9.2083 -0.2364 -1.0817 46 1 9.1662 0.9375 0.2581 47 1 2.7777 -1.1514 1.8063 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021716636.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:09 Heat of formation + Delta-G solvation = 87.431915 kcal Electronic energy + Delta-G solvation = -29691.501883 eV Core-core repulsion = 25841.525444 eV Total energy + Delta-G solvation = -3849.976439 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.20733 -40.87672 -39.04099 -37.37621 -35.50243 -34.41801 -34.19035 -33.31188 -32.18403 -31.47372 -30.74216 -27.36091 -26.94850 -25.37584 -24.78999 -24.08684 -23.82829 -21.86354 -21.20674 -20.66334 -20.12502 -18.69999 -18.20065 -17.93305 -16.98174 -16.71714 -16.62707 -16.45857 -16.05699 -15.79458 -15.53658 -15.31008 -15.16606 -14.86877 -14.73098 -14.50168 -14.08363 -13.87521 -13.73210 -13.55215 -13.42563 -13.20487 -12.84572 -12.71747 -12.68973 -12.55019 -12.21499 -12.14143 -12.06102 -11.86097 -11.72157 -11.59624 -11.51647 -11.10722 -10.91069 -10.67917 -10.47681 -10.03150 -9.86811 -9.51101 -8.55839 -7.89451 -5.45822 -0.73357 0.10169 1.40721 1.43760 1.44318 1.55188 1.72801 1.85704 2.16795 2.48057 2.83835 2.96806 3.23140 3.26239 3.53031 3.61716 3.76554 3.84871 3.90592 3.94216 4.01932 4.08135 4.16746 4.29317 4.38432 4.48445 4.61653 4.64467 4.70023 4.72977 4.85473 4.87048 4.92306 4.95796 5.02352 5.06763 5.09173 5.11557 5.22064 5.26898 5.35998 5.41210 5.44798 5.49348 5.63496 5.68210 5.74549 6.37163 6.42231 6.50472 6.60439 7.08256 7.13840 7.80113 8.38402 9.14879 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023011 B = 0.002682 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.542760 B =10436.801784 C =10898.137235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.207 4.207 3 C -0.014 4.014 4 C -0.054 4.054 5 C -0.112 4.112 6 C 0.070 3.930 7 C 0.557 3.443 8 O -0.557 6.557 9 N -0.584 5.584 10 C 0.078 3.922 11 C -0.125 4.125 12 C -0.110 4.110 13 C -0.105 4.105 14 H 0.045 0.955 15 C 0.198 3.802 16 N -0.610 5.610 17 C -0.274 4.274 18 H 0.053 0.947 19 C -0.039 4.039 20 N -0.928 5.928 21 Si 0.967 3.033 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.273 1.273 25 C 0.138 3.862 26 C -0.098 4.098 27 C 0.162 3.838 28 H 0.067 0.933 29 N -0.454 5.454 30 C 0.117 3.883 31 H 0.263 0.737 32 H 0.171 0.829 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.103 0.897 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.004 0.996 41 H 0.043 0.957 42 H 0.253 0.747 43 H 0.048 0.952 44 H 0.012 0.988 45 H 0.044 0.956 46 H 0.082 0.918 47 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.765 3.027 2.743 30.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.208 4.208 3 C -0.016 4.016 4 C -0.079 4.079 5 C -0.133 4.133 6 C -0.066 4.066 7 C 0.344 3.656 8 O -0.436 6.436 9 N -0.314 5.314 10 C -0.044 4.044 11 C -0.163 4.163 12 C -0.148 4.148 13 C -0.126 4.126 14 H 0.063 0.937 15 C 0.072 3.928 16 N -0.334 5.334 17 C -0.405 4.405 18 H 0.071 0.929 19 C -0.235 4.235 20 N -0.572 5.572 21 Si 0.794 3.206 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.198 1.198 25 C 0.012 3.988 26 C -0.137 4.137 27 C 0.059 3.941 28 H 0.085 0.915 29 N -0.165 5.165 30 C -0.043 4.043 31 H 0.279 0.721 32 H 0.188 0.812 33 H 0.168 0.832 34 H 0.165 0.835 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.121 0.879 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.022 0.978 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.030 0.970 45 H 0.063 0.937 46 H 0.100 0.900 47 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -28.784 2.940 3.161 29.105 hybrid contribution 0.929 0.036 -1.279 1.581 sum -27.854 2.976 1.882 28.076 Atomic orbital electron populations 1.25879 0.96448 0.95198 0.95535 1.19782 0.91792 1.04597 1.04624 1.17282 0.88967 0.98983 0.96395 1.21935 0.92491 0.95589 0.97901 1.22071 0.95459 0.97488 0.98305 1.21137 0.93198 0.98067 0.94182 1.18381 0.86766 0.81688 0.78719 1.90827 1.65606 1.40197 1.46986 1.48196 1.06484 1.27139 1.49577 1.23000 0.99899 0.85055 0.96396 1.21922 0.94790 0.97792 1.01778 1.21493 0.95758 0.97907 0.99640 1.21981 0.97021 0.94773 0.98818 0.93683 1.20448 0.88164 0.91025 0.93169 1.44270 1.43645 1.00957 1.44498 1.19333 1.05920 1.18304 0.96926 0.92910 1.26022 0.97900 1.01277 0.98345 1.70155 1.36623 1.29056 1.21329 0.85307 0.78719 0.77208 0.79352 1.20749 1.21242 1.19809 1.21226 0.93630 0.86738 0.97243 1.22239 0.94339 0.98573 0.98535 1.21087 0.78330 0.95787 0.98877 0.91521 1.67524 1.08753 1.15826 1.24381 1.23558 0.88550 0.95176 0.97029 0.72105 0.81185 0.83168 0.83502 0.90663 0.92915 0.87877 0.91940 0.91383 0.97767 0.93803 0.93828 0.93312 0.96959 0.93746 0.89958 0.78725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 19.25 74.32 1.43 0.66 16 2 C -0.21 -2.50 13.28 30.02 0.40 -2.10 16 3 C -0.01 -0.21 5.75 -21.20 -0.12 -0.33 16 4 C -0.05 -0.82 9.89 22.69 0.22 -0.59 16 5 C -0.11 -2.33 9.60 22.56 0.22 -2.12 16 6 C 0.07 1.76 6.44 41.88 0.27 2.03 16 7 C 0.56 18.19 7.53 86.83 0.65 18.84 16 8 O -0.56 -21.39 12.11 -3.86 -0.05 -21.44 16 9 N -0.58 -18.69 2.97 -798.54 -2.37 -21.06 16 10 C 0.08 1.91 5.99 86.31 0.52 2.42 16 11 C -0.12 -3.02 6.07 30.69 0.19 -2.83 16 12 C -0.11 -3.42 5.24 30.58 0.16 -3.26 16 13 C -0.10 -4.20 2.21 -10.74 -0.02 -4.22 16 14 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 15 C 0.20 9.94 4.58 86.29 0.40 10.34 16 16 N -0.61 -33.29 2.94 -698.85 -2.06 -35.35 16 17 C -0.27 -16.16 9.47 84.04 0.80 -15.36 16 18 H 0.05 3.11 7.87 -2.91 -0.02 3.08 16 19 C -0.04 -2.24 4.92 84.86 0.42 -1.83 16 20 N -0.93 -56.26 11.72 21.65 0.25 -56.00 16 21 Si 0.97 46.38 29.58 68.60 2.03 48.41 16 22 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 23 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 24 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 25 C 0.14 6.61 6.50 86.42 0.56 7.17 16 26 C -0.10 -4.15 3.80 30.66 0.12 -4.03 16 27 C 0.16 6.15 2.64 45.00 0.12 6.27 16 28 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 29 N -0.45 -9.43 6.38 -183.93 -1.17 -10.60 16 30 C 0.12 1.76 10.91 85.18 0.93 2.69 16 31 H 0.26 -0.56 7.80 -4.41 -0.03 -0.60 16 32 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 33 H 0.15 3.13 7.80 -2.91 -0.02 3.11 16 34 H 0.15 3.23 4.03 -50.77 -0.20 3.02 16 35 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 41 H 0.04 2.44 6.69 -2.39 -0.02 2.42 16 42 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 43 H 0.05 2.35 7.93 -2.39 -0.02 2.33 16 44 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.04 2.05 7.33 -2.39 -0.02 2.04 16 46 H 0.08 3.44 6.25 -2.38 -0.01 3.43 16 47 H 0.20 1.70 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -74.13 374.51 4.66 -69.47 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.78 Total: 12.82 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: 7.25 Total: 13.75 kcal Atomic # 7 Polarization: -117.66 SS G_CDS: -5.35 Total: -123.01 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.05 Total: -21.44 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -74.13 4.66 -69.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021716636.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.903 kcal (2) G-P(sol) polarization free energy of solvation -74.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds