Wall clock time and date at job start Tue Mar 31 2020 22:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39984 * 120.46380 * 9.42886 * 3 2 1 5 5 C 1.38217 * 118.36580 * 179.75590 * 4 3 2 6 6 C 1.39485 * 119.20921 * 0.50248 * 5 4 3 7 7 C 1.47988 * 119.57271 * 179.75148 * 6 5 4 8 8 O 1.21537 * 120.00010 * 350.61439 * 7 6 5 9 9 N 1.34781 * 120.00279 * 170.60527 * 7 6 5 10 10 C 1.47060 * 120.83786 * 352.06122 * 9 7 6 11 11 C 1.53124 * 109.05443 * 233.43606 * 10 9 7 12 12 C 1.53144 * 109.61489 * 306.00470 * 11 10 9 13 13 C 1.52853 * 109.45877 * 60.74427 * 12 11 10 14 14 H 1.09001 * 109.28734 * 58.21548 * 13 12 11 15 15 C 1.53061 * 110.55377 * 178.75489 * 13 12 11 16 16 N 1.47078 * 108.32544 * 175.58508 * 15 13 12 17 17 C 1.36935 * 120.47301 * 126.65663 * 16 15 13 18 18 H 1.08001 * 119.99609 * 208.04368 * 17 16 15 19 19 C 1.38813 * 120.00300 * 28.04610 * 17 16 15 20 20 N 1.31620 * 119.99769 * 17.02956 * 19 17 16 21 21 Si 1.86793 * 120.00201 * 197.03351 * 19 17 16 22 22 H 1.48509 * 109.46967 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47513 * 119.99694 * 21 19 17 24 24 H 1.48502 * 109.47390 * 240.00029 * 21 19 17 25 25 C 1.46896 * 119.13433 * 306.74420 * 16 15 13 26 26 C 1.53309 * 109.09855 * 52.47273 * 25 16 15 27 27 C 1.46721 * 120.84134 * 172.08683 * 9 7 6 28 28 H 1.08999 * 109.53236 * 245.44497 * 27 9 7 29 29 N 1.32825 * 120.86073 * 359.48500 * 6 5 4 30 30 C 1.31295 * 121.78651 * 0.27208 * 29 6 5 31 31 H 4.52938 * 13.94824 * 0.02562 * 4 2 1 32 32 H 1.08007 * 120.81866 * 0.02562 * 4 3 2 33 33 H 1.08004 * 120.39445 * 180.26177 * 5 4 3 34 34 H 1.09000 * 109.54500 * 353.31711 * 10 9 7 35 35 H 1.09002 * 109.53822 * 113.56822 * 10 9 7 36 36 H 1.09004 * 109.44694 * 66.05068 * 11 10 9 37 37 H 1.09006 * 109.44777 * 185.98851 * 11 10 9 38 38 H 1.09001 * 109.50795 * 180.78987 * 12 11 10 39 39 H 1.08997 * 109.50479 * 300.87635 * 12 11 10 40 40 H 1.08995 * 109.69287 * 295.28920 * 15 13 12 41 41 H 1.08997 * 109.69431 * 55.83605 * 15 13 12 42 42 H 0.97003 * 119.99889 * 179.97438 * 20 19 17 43 43 H 1.09006 * 109.44599 * 292.64201 * 25 16 15 44 44 H 1.08993 * 109.62380 * 172.41451 * 25 16 15 45 45 H 1.08998 * 109.55842 * 186.17100 * 26 25 16 46 46 H 1.08994 * 109.55710 * 65.95960 * 26 25 16 47 47 H 1.07997 * 119.65164 * 180.02562 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3162 -1.1893 -0.1977 5 6 4.6974 -1.1380 -0.1945 6 6 5.3326 0.0862 0.0145 7 6 6.8111 0.1495 0.0250 8 8 7.4633 -0.8761 0.0238 9 7 7.4344 1.3444 0.0357 10 6 6.6755 2.5922 -0.1372 11 6 7.2979 3.4018 -1.2782 12 6 8.7927 3.6010 -1.0114 13 6 9.4832 2.2392 -0.9401 14 1 9.3209 1.7038 -1.8756 15 6 10.9858 2.4103 -0.7046 16 7 11.5826 1.0764 -0.5382 17 6 12.6502 0.6927 -1.3051 18 1 12.8058 -0.3522 -1.5299 19 6 13.5325 1.6466 -1.7936 20 7 13.5559 2.8524 -1.2666 21 14 14.6864 1.2189 -3.1989 22 1 14.4644 -0.1908 -3.6101 23 1 14.4197 2.1185 -4.3498 24 1 16.0929 1.3885 -2.7536 25 6 11.0173 0.1595 0.4605 26 6 9.5068 0.0354 0.2294 27 6 8.8874 1.4333 0.2196 28 1 9.1054 1.9352 1.1622 29 7 4.6277 1.1968 0.1990 30 6 3.3148 1.1908 0.1981 31 1 -1.0501 -0.0010 -0.0007 32 1 2.7977 -2.1239 -0.3533 33 1 5.2780 -2.0356 -0.3481 34 1 5.6389 2.3579 -0.3795 35 1 6.7135 3.1727 0.7846 36 1 7.1652 2.8657 -2.2180 37 1 6.8084 4.3736 -1.3426 38 1 9.2310 4.1894 -1.8175 39 1 8.9268 4.1240 -0.0646 40 1 11.4373 2.9103 -1.5614 41 1 11.1515 3.0023 0.1954 42 1 14.1726 3.5189 -1.6077 43 1 11.2019 0.5530 1.4601 44 1 11.4828 -0.8212 0.3621 45 1 9.0624 -0.5549 1.0307 46 1 9.3230 -0.4519 -0.7280 47 1 2.7762 2.1142 0.3511 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021716640.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:13 Heat of formation + Delta-G solvation = 109.682006 kcal Electronic energy + Delta-G solvation = -29702.042773 eV Core-core repulsion = 25853.031170 eV Total energy + Delta-G solvation = -3849.011603 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.16196 -39.75593 -37.59634 -35.82419 -34.76051 -32.98292 -32.62999 -32.39364 -31.01639 -30.05694 -29.05512 -25.93137 -25.45112 -24.10206 -24.02868 -22.47680 -22.25811 -20.55963 -19.62417 -19.47575 -19.27301 -17.11549 -17.01242 -16.63667 -16.07448 -15.53900 -15.36184 -15.06563 -14.81061 -14.43541 -14.15681 -13.96665 -13.81271 -13.57144 -13.35916 -13.21551 -12.71331 -12.56574 -12.34774 -12.19018 -12.05237 -11.93769 -11.48422 -11.36540 -10.96658 -10.89422 -10.81999 -10.68825 -10.57780 -10.22948 -10.20436 -10.04565 -9.95577 -9.69962 -9.51808 -9.25262 -9.14174 -8.82817 -8.39072 -8.13766 -6.57095 -5.72262 -3.13493 0.00964 0.79841 2.19812 2.24114 3.01967 3.07512 3.41358 3.49135 3.52209 3.62364 3.67561 3.91279 4.34941 4.42128 4.55728 4.70192 4.78438 5.11605 5.23119 5.27278 5.31904 5.40007 5.45589 5.50727 5.54685 5.64592 5.69465 5.72571 5.87091 5.94368 6.01371 6.12649 6.24694 6.32127 6.39527 6.47369 6.50518 6.57345 6.65872 6.71812 6.86098 6.96771 6.99271 7.08507 7.26728 7.30545 7.42405 7.69135 7.70803 7.87360 8.31735 8.52536 9.28455 9.92300 10.48662 11.36141 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023909 B = 0.002683 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.809701 B =10435.248089 C =10975.529206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.154 4.154 3 C -0.026 4.026 4 C -0.057 4.057 5 C -0.110 4.110 6 C 0.095 3.905 7 C 0.560 3.440 8 O -0.521 6.521 9 N -0.581 5.581 10 C 0.075 3.925 11 C -0.134 4.134 12 C -0.113 4.113 13 C -0.119 4.119 14 H 0.065 0.935 15 C 0.183 3.817 16 N -0.594 5.594 17 C -0.246 4.246 18 H 0.065 0.935 19 C 0.000 4.000 20 N -0.904 5.904 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.139 3.861 26 C -0.116 4.116 27 C 0.154 3.846 28 H 0.067 0.933 29 N -0.444 5.444 30 C 0.117 3.883 31 H 0.227 0.773 32 H 0.146 0.854 33 H 0.156 0.844 34 H 0.140 0.860 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.089 0.911 41 H 0.019 0.981 42 H 0.252 0.748 43 H 0.014 0.986 44 H 0.055 0.945 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.206 -1.774 2.983 26.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.155 4.155 3 C -0.028 4.028 4 C -0.082 4.082 5 C -0.130 4.130 6 C -0.042 4.042 7 C 0.346 3.654 8 O -0.398 6.398 9 N -0.311 5.311 10 C -0.048 4.048 11 C -0.172 4.172 12 C -0.151 4.151 13 C -0.140 4.140 14 H 0.084 0.916 15 C 0.056 3.944 16 N -0.316 5.316 17 C -0.376 4.376 18 H 0.083 0.917 19 C -0.198 4.198 20 N -0.549 5.549 21 Si 0.730 3.270 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.218 1.218 25 C 0.012 3.988 26 C -0.156 4.156 27 C 0.053 3.947 28 H 0.085 0.915 29 N -0.155 5.155 30 C -0.042 4.042 31 H 0.244 0.756 32 H 0.163 0.837 33 H 0.174 0.826 34 H 0.156 0.844 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.108 0.892 41 H 0.037 0.963 42 H 0.062 0.938 43 H 0.031 0.969 44 H 0.074 0.926 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -25.202 -1.435 3.083 25.431 hybrid contribution -0.058 -0.661 -0.855 1.082 sum -25.260 -2.096 2.229 25.444 Atomic orbital electron populations 1.24962 0.95755 0.98414 0.98267 1.19687 0.91585 1.02155 1.02061 1.17119 0.87972 0.95211 1.02516 1.21693 0.93535 0.97905 0.95110 1.22073 0.94376 0.99317 0.97264 1.21721 0.95230 0.89652 0.97642 1.17864 0.85131 0.84193 0.78215 1.90878 1.64164 1.34513 1.50198 1.48159 1.08703 1.05697 1.68569 1.22910 0.99262 0.84334 0.98268 1.21953 0.96871 0.99653 0.98720 1.21507 0.94050 0.97837 1.01749 1.22249 0.99486 0.94472 0.97764 0.91611 1.20753 0.85795 0.86974 1.00829 1.44123 1.34123 1.12983 1.40398 1.19256 1.01377 0.93040 1.23943 0.91695 1.25026 0.97483 0.96910 1.00428 1.70040 1.39010 1.04584 1.41307 0.86248 0.80457 0.77842 0.82427 1.20280 1.21646 1.21805 1.21125 0.91497 0.94446 0.91696 1.22461 0.96200 0.93661 1.03241 1.21406 0.76449 0.98609 0.98266 0.91532 1.67750 1.07395 1.28022 1.12377 1.23150 0.89576 0.97241 0.94225 0.75614 0.83671 0.82645 0.84385 0.92039 0.92265 0.91382 0.91827 0.92212 0.89237 0.96311 0.93797 0.96862 0.92604 0.91243 0.91041 0.81554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 19.25 29.55 0.57 -0.31 16 2 C -0.15 -1.19 13.28 -38.84 -0.52 -1.70 16 3 C -0.03 -0.22 5.75 -106.69 -0.61 -0.84 16 4 C -0.06 -0.48 9.89 -38.94 -0.39 -0.86 16 5 C -0.11 -1.15 9.61 -39.12 -0.38 -1.53 16 6 C 0.09 1.20 6.59 -82.98 -0.55 0.66 16 7 C 0.56 9.00 7.57 -12.26 -0.09 8.91 16 8 O -0.52 -9.60 11.91 5.33 0.06 -9.54 16 9 N -0.58 -9.34 2.97 -166.37 -0.49 -9.83 16 10 C 0.07 0.99 5.87 -3.67 -0.02 0.97 16 11 C -0.13 -1.78 6.07 -26.59 -0.16 -1.94 16 12 C -0.11 -1.82 5.24 -26.73 -0.14 -1.96 16 13 C -0.12 -2.33 2.21 -90.52 -0.20 -2.53 16 14 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 15 C 0.18 4.42 4.65 -3.70 -0.02 4.40 16 16 N -0.59 -15.45 3.00 -172.23 -0.52 -15.97 16 17 C -0.25 -6.98 9.57 -15.06 -0.14 -7.12 16 18 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 19 C 0.00 -0.01 4.91 -17.43 -0.09 -0.10 16 20 N -0.90 -26.56 11.19 55.49 0.62 -25.94 16 21 Si 0.90 22.20 29.59 -169.99 -5.03 17.17 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 C 0.14 3.15 6.51 -3.67 -0.02 3.13 16 26 C -0.12 -2.36 3.79 -26.62 -0.10 -2.46 16 27 C 0.15 2.86 2.64 -67.72 -0.18 2.69 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 29 N -0.44 -4.96 6.10 -9.49 -0.06 -5.02 16 30 C 0.12 1.03 10.92 -17.15 -0.19 0.84 16 31 H 0.23 0.39 7.80 -54.09 -0.42 -0.03 16 32 H 0.15 0.86 8.06 -52.48 -0.42 0.43 16 33 H 0.16 1.57 7.66 -52.48 -0.40 1.17 16 34 H 0.14 1.68 4.04 -83.65 -0.34 1.34 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 1.26 7.92 -51.93 -0.41 0.84 16 45 H 0.07 1.38 6.52 -51.93 -0.34 1.04 16 46 H 0.07 1.59 7.08 -51.93 -0.37 1.22 16 47 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 373.07 15.07 5.62 5.62 Total: -1.00 -32.46 373.07 -9.81 -42.27 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -6.79 Total: 1.01 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -3.22 Total: 0.23 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.45 Total: -56.76 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.06 Total: -9.54 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.46 -9.81 -42.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021716640.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.950 kcal (2) G-P(sol) polarization free energy of solvation -32.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds