Wall clock time and date at job start Tue Mar 31 2020 22:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39984 * 120.46380 * 9.42886 * 3 2 1 5 5 C 1.38217 * 118.36580 * 179.75590 * 4 3 2 6 6 C 1.39485 * 119.20921 * 0.50248 * 5 4 3 7 7 C 1.47988 * 119.57271 * 179.75148 * 6 5 4 8 8 O 1.21537 * 120.00010 * 350.61439 * 7 6 5 9 9 N 1.34781 * 120.00279 * 170.60527 * 7 6 5 10 10 C 1.47060 * 120.83786 * 352.06122 * 9 7 6 11 11 C 1.53124 * 109.05443 * 233.43606 * 10 9 7 12 12 C 1.53144 * 109.61489 * 306.00470 * 11 10 9 13 13 C 1.52853 * 109.45877 * 60.74427 * 12 11 10 14 14 H 1.09001 * 109.28734 * 58.21548 * 13 12 11 15 15 C 1.53061 * 110.55377 * 178.75489 * 13 12 11 16 16 N 1.47078 * 108.32544 * 175.58508 * 15 13 12 17 17 C 1.36935 * 120.47301 * 126.65663 * 16 15 13 18 18 H 1.08001 * 119.99609 * 208.04368 * 17 16 15 19 19 C 1.38813 * 120.00300 * 28.04610 * 17 16 15 20 20 N 1.31620 * 119.99769 * 17.02956 * 19 17 16 21 21 Si 1.86793 * 120.00201 * 197.03351 * 19 17 16 22 22 H 1.48509 * 109.46967 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47513 * 119.99694 * 21 19 17 24 24 H 1.48502 * 109.47390 * 240.00029 * 21 19 17 25 25 C 1.46896 * 119.13433 * 306.74420 * 16 15 13 26 26 C 1.53309 * 109.09855 * 52.47273 * 25 16 15 27 27 C 1.46721 * 120.84134 * 172.08683 * 9 7 6 28 28 H 1.08999 * 109.53236 * 245.44497 * 27 9 7 29 29 N 1.32825 * 120.86073 * 359.48500 * 6 5 4 30 30 C 1.31295 * 121.78651 * 0.27208 * 29 6 5 31 31 H 4.52938 * 13.94824 * 0.02562 * 4 2 1 32 32 H 1.08007 * 120.81866 * 0.02562 * 4 3 2 33 33 H 1.08004 * 120.39445 * 180.26177 * 5 4 3 34 34 H 1.09000 * 109.54500 * 353.31711 * 10 9 7 35 35 H 1.09002 * 109.53822 * 113.56822 * 10 9 7 36 36 H 1.09004 * 109.44694 * 66.05068 * 11 10 9 37 37 H 1.09006 * 109.44777 * 185.98851 * 11 10 9 38 38 H 1.09001 * 109.50795 * 180.78987 * 12 11 10 39 39 H 1.08997 * 109.50479 * 300.87635 * 12 11 10 40 40 H 1.08995 * 109.69287 * 295.28920 * 15 13 12 41 41 H 1.08997 * 109.69431 * 55.83605 * 15 13 12 42 42 H 0.97003 * 119.99889 * 179.97438 * 20 19 17 43 43 H 1.09006 * 109.44599 * 292.64201 * 25 16 15 44 44 H 1.08993 * 109.62380 * 172.41451 * 25 16 15 45 45 H 1.08998 * 109.55842 * 186.17100 * 26 25 16 46 46 H 1.08994 * 109.55710 * 65.95960 * 26 25 16 47 47 H 1.07997 * 119.65164 * 180.02562 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3162 -1.1893 -0.1977 5 6 4.6974 -1.1380 -0.1945 6 6 5.3326 0.0862 0.0145 7 6 6.8111 0.1495 0.0250 8 8 7.4633 -0.8761 0.0238 9 7 7.4344 1.3444 0.0357 10 6 6.6755 2.5922 -0.1372 11 6 7.2979 3.4018 -1.2782 12 6 8.7927 3.6010 -1.0114 13 6 9.4832 2.2392 -0.9401 14 1 9.3209 1.7038 -1.8756 15 6 10.9858 2.4103 -0.7046 16 7 11.5826 1.0764 -0.5382 17 6 12.6502 0.6927 -1.3051 18 1 12.8058 -0.3522 -1.5299 19 6 13.5325 1.6466 -1.7936 20 7 13.5559 2.8524 -1.2666 21 14 14.6864 1.2189 -3.1989 22 1 14.4644 -0.1908 -3.6101 23 1 14.4197 2.1185 -4.3498 24 1 16.0929 1.3885 -2.7536 25 6 11.0173 0.1595 0.4605 26 6 9.5068 0.0354 0.2294 27 6 8.8874 1.4333 0.2196 28 1 9.1054 1.9352 1.1622 29 7 4.6277 1.1968 0.1990 30 6 3.3148 1.1908 0.1981 31 1 -1.0501 -0.0010 -0.0007 32 1 2.7977 -2.1239 -0.3533 33 1 5.2780 -2.0356 -0.3481 34 1 5.6389 2.3579 -0.3795 35 1 6.7135 3.1727 0.7846 36 1 7.1652 2.8657 -2.2180 37 1 6.8084 4.3736 -1.3426 38 1 9.2310 4.1894 -1.8175 39 1 8.9268 4.1240 -0.0646 40 1 11.4373 2.9103 -1.5614 41 1 11.1515 3.0023 0.1954 42 1 14.1726 3.5189 -1.6077 43 1 11.2019 0.5530 1.4601 44 1 11.4828 -0.8212 0.3621 45 1 9.0624 -0.5549 1.0307 46 1 9.3230 -0.4519 -0.7280 47 1 2.7762 2.1142 0.3511 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021716640.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:12 Heat of formation + Delta-G solvation = 91.771456 kcal Electronic energy + Delta-G solvation = -29702.819432 eV Core-core repulsion = 25853.031170 eV Total energy + Delta-G solvation = -3849.788262 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.19975 -40.86917 -39.04152 -37.39145 -35.51149 -34.43221 -34.18234 -33.29266 -32.16966 -31.48061 -30.70096 -27.37761 -26.94985 -25.36460 -24.79437 -24.06582 -23.82559 -21.84150 -21.18387 -20.68802 -20.12420 -18.73071 -18.15218 -17.92029 -16.97570 -16.66652 -16.59554 -16.51188 -16.01293 -15.80998 -15.52391 -15.31055 -15.15289 -14.87753 -14.79955 -14.50960 -14.05973 -13.85385 -13.70309 -13.55994 -13.40120 -13.20070 -12.85484 -12.71916 -12.70053 -12.47269 -12.24025 -12.14146 -12.03186 -11.83000 -11.72128 -11.57902 -11.47221 -11.11272 -10.91611 -10.66665 -10.48748 -9.95538 -9.87042 -9.48797 -8.67030 -7.88874 -5.34488 -0.75539 0.10634 1.40453 1.43527 1.44921 1.56412 1.72841 1.88684 2.20574 2.49203 2.87274 2.94335 3.23866 3.26348 3.53243 3.60897 3.76586 3.86047 3.90339 3.94718 4.03413 4.09170 4.18022 4.30745 4.38893 4.49310 4.62059 4.65293 4.70794 4.73478 4.86357 4.87892 4.92008 4.97779 5.00667 5.08001 5.10419 5.11610 5.23245 5.29292 5.37055 5.42732 5.49851 5.52105 5.63016 5.73067 5.79182 6.36021 6.39999 6.51395 6.60815 7.09101 7.12825 7.82770 8.34875 9.17117 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023909 B = 0.002683 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.809701 B =10435.248089 C =10975.529206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.207 4.207 3 C -0.013 4.013 4 C -0.054 4.054 5 C -0.110 4.110 6 C 0.068 3.932 7 C 0.555 3.445 8 O -0.556 6.556 9 N -0.585 5.585 10 C 0.074 3.926 11 C -0.125 4.125 12 C -0.109 4.109 13 C -0.105 4.105 14 H 0.042 0.958 15 C 0.193 3.807 16 N -0.613 5.613 17 C -0.265 4.265 18 H 0.060 0.940 19 C -0.049 4.049 20 N -0.931 5.931 21 Si 0.967 3.033 22 H -0.271 1.271 23 H -0.287 1.287 24 H -0.288 1.288 25 C 0.137 3.863 26 C -0.095 4.095 27 C 0.161 3.839 28 H 0.067 0.933 29 N -0.452 5.452 30 C 0.117 3.883 31 H 0.263 0.737 32 H 0.171 0.829 33 H 0.152 0.848 34 H 0.157 0.843 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.103 0.897 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.002 0.998 42 H 0.251 0.749 43 H 0.015 0.985 44 H 0.050 0.950 45 H 0.075 0.925 46 H 0.048 0.952 47 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.247 -1.372 2.837 30.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.208 4.208 3 C -0.016 4.016 4 C -0.079 4.079 5 C -0.131 4.131 6 C -0.067 4.067 7 C 0.343 3.657 8 O -0.436 6.436 9 N -0.315 5.315 10 C -0.047 4.047 11 C -0.163 4.163 12 C -0.148 4.148 13 C -0.126 4.126 14 H 0.060 0.940 15 C 0.067 3.933 16 N -0.336 5.336 17 C -0.395 4.395 18 H 0.077 0.923 19 C -0.244 4.244 20 N -0.577 5.577 21 Si 0.795 3.205 22 H -0.196 1.196 23 H -0.213 1.213 24 H -0.215 1.215 25 C 0.011 3.989 26 C -0.134 4.134 27 C 0.058 3.942 28 H 0.085 0.915 29 N -0.163 5.163 30 C -0.043 4.043 31 H 0.279 0.721 32 H 0.188 0.812 33 H 0.170 0.830 34 H 0.173 0.827 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.121 0.879 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.020 0.980 42 H 0.061 0.939 43 H 0.033 0.967 44 H 0.069 0.931 45 H 0.093 0.907 46 H 0.067 0.933 47 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -29.275 -1.033 2.943 29.441 hybrid contribution 0.983 -0.824 -0.758 1.490 sum -28.292 -1.857 2.185 28.437 Atomic orbital electron populations 1.25881 0.96451 0.95750 0.94960 1.19785 0.91798 1.04640 1.04588 1.17289 0.88956 0.94965 1.00345 1.21949 0.92498 0.99207 0.94253 1.22087 0.95412 0.98426 0.97180 1.21159 0.93176 0.91167 1.01203 1.18376 0.86815 0.83470 0.77054 1.90835 1.65519 1.35472 1.51729 1.48180 1.07421 1.07082 1.68805 1.23175 0.99728 0.83097 0.98714 1.21926 0.94608 1.01426 0.98328 1.21486 0.95913 0.95256 1.02109 1.21976 0.96793 0.96821 0.97019 0.93990 1.20547 0.88457 0.85817 0.98509 1.44393 1.34191 1.13880 1.41127 1.19506 1.02257 0.93068 1.24663 0.92258 1.25777 0.99169 0.96868 1.02599 1.70180 1.39787 1.05365 1.42411 0.85218 0.78240 0.77804 0.79258 1.19566 1.21318 1.21531 1.21228 0.93123 0.93553 0.91009 1.22180 0.94326 0.94838 1.02063 1.21090 0.78550 0.96967 0.97571 0.91510 1.67507 1.08578 1.27448 1.12789 1.23600 0.88647 0.98631 0.93432 0.72118 0.81155 0.83027 0.82665 0.90936 0.93075 0.87891 0.92181 0.91445 0.92412 0.97963 0.93945 0.96726 0.93120 0.90679 0.93310 0.78697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 19.25 74.32 1.43 0.68 16 2 C -0.21 -2.45 13.28 30.01 0.40 -2.05 16 3 C -0.01 -0.19 5.75 -21.20 -0.12 -0.32 16 4 C -0.05 -0.80 9.89 22.69 0.22 -0.57 16 5 C -0.11 -2.25 9.61 22.57 0.22 -2.03 16 6 C 0.07 1.71 6.59 41.88 0.28 1.98 16 7 C 0.56 18.11 7.57 86.83 0.66 18.77 16 8 O -0.56 -21.33 11.91 -3.83 -0.05 -21.38 16 9 N -0.59 -18.83 2.97 -798.54 -2.38 -21.21 16 10 C 0.07 1.84 5.87 86.31 0.51 2.35 16 11 C -0.12 -3.11 6.07 30.68 0.19 -2.93 16 12 C -0.11 -3.50 5.24 30.59 0.16 -3.34 16 13 C -0.11 -4.29 2.21 -10.73 -0.02 -4.31 16 14 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 15 C 0.19 9.78 4.65 86.29 0.40 10.18 16 16 N -0.61 -33.44 3.00 -698.82 -2.10 -35.54 16 17 C -0.26 -15.59 9.57 84.03 0.80 -14.78 16 18 H 0.06 3.47 7.88 -2.91 -0.02 3.45 16 19 C -0.05 -2.84 4.91 84.86 0.42 -2.42 16 20 N -0.93 -56.50 11.19 21.65 0.24 -56.25 16 21 Si 0.97 46.77 29.59 68.60 2.03 48.80 16 22 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 25 C 0.14 6.51 6.51 86.41 0.56 7.07 16 26 C -0.09 -4.02 3.79 30.66 0.12 -3.90 16 27 C 0.16 6.14 2.64 45.01 0.12 6.26 16 28 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 29 N -0.45 -9.27 6.10 -183.94 -1.12 -10.39 16 30 C 0.12 1.73 10.92 85.18 0.93 2.66 16 31 H 0.26 -0.60 7.80 -4.41 -0.03 -0.64 16 32 H 0.17 1.56 8.06 -2.91 -0.02 1.53 16 33 H 0.15 3.12 7.66 -2.91 -0.02 3.10 16 34 H 0.16 3.44 4.04 -65.03 -0.26 3.18 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.05 1.37 8.14 -2.38 -0.02 1.36 16 37 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 38 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.06 3.28 6.07 -2.39 -0.01 3.27 16 41 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 42 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 43 H 0.01 0.70 8.14 -2.38 -0.02 0.68 16 44 H 0.05 2.40 7.92 -2.39 -0.02 2.38 16 45 H 0.07 3.09 6.52 -2.39 -0.02 3.08 16 46 H 0.05 2.28 7.08 -2.39 -0.02 2.27 16 47 H 0.20 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -74.12 373.07 4.61 -69.51 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.72 Total: 13.16 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 7.26 Total: 13.30 kcal Atomic # 7 Polarization: -118.04 SS G_CDS: -5.35 Total: -123.39 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.05 Total: -21.38 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -74.12 4.61 -69.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021716640.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.279 kcal (2) G-P(sol) polarization free energy of solvation -74.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds