Wall clock time and date at job start Tue Mar 31 2020 22:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39991 * 120.46655 * 342.65929 * 3 2 1 5 5 C 1.38209 * 118.36780 * 179.75485 * 4 3 2 6 6 C 1.39492 * 119.20933 * 0.53053 * 5 4 3 7 7 C 1.47994 * 119.56897 * 179.73388 * 6 5 4 8 8 O 1.21533 * 120.00084 * 21.07761 * 7 6 5 9 9 N 1.34778 * 119.99567 * 200.80898 * 7 6 5 10 10 C 1.46953 * 120.84566 * 0.02562 * 9 7 6 11 11 C 1.53140 * 109.01742 * 125.95693 * 10 9 7 12 12 C 1.53114 * 109.48245 * 54.08112 * 11 10 9 13 13 C 1.52856 * 109.34655 * 299.34665 * 12 11 10 14 14 H 1.08999 * 109.25245 * 303.28190 * 13 12 11 15 15 C 1.52764 * 110.20946 * 183.23227 * 13 12 11 16 16 N 1.46900 * 109.19488 * 292.63785 * 15 13 12 17 17 C 1.36933 * 120.77288 * 126.67914 * 16 15 13 18 18 H 1.08008 * 119.99996 * 337.44105 * 17 16 15 19 19 C 1.38816 * 120.00053 * 157.44817 * 17 16 15 20 20 N 1.31613 * 119.99741 * 334.80746 * 19 17 16 21 21 Si 1.86794 * 119.99897 * 154.80998 * 19 17 16 22 22 H 1.48500 * 109.47247 * 94.63920 * 21 19 17 23 23 H 1.48506 * 109.46807 * 214.63699 * 21 19 17 24 24 H 1.48496 * 109.47607 * 334.63489 * 21 19 17 25 25 C 1.46968 * 118.45207 * 306.65219 * 16 15 13 26 26 C 1.53096 * 108.61727 * 54.32073 * 25 16 15 27 27 C 1.47305 * 120.84250 * 179.74155 * 9 7 6 28 28 H 1.08995 * 110.07038 * 355.09140 * 27 9 7 29 29 N 1.32821 * 120.86113 * 359.45334 * 6 5 4 30 30 C 1.31300 * 121.78636 * 0.27978 * 29 6 5 31 31 H 4.52940 * 13.94694 * 0.02562 * 4 2 1 32 32 H 1.07996 * 120.81047 * 0.02562 * 4 3 2 33 33 H 1.08003 * 120.39472 * 180.25348 * 5 4 3 34 34 H 1.08998 * 109.54146 * 245.81657 * 10 9 7 35 35 H 1.08996 * 109.54366 * 5.99994 * 10 9 7 36 36 H 1.09007 * 109.46638 * 174.08089 * 11 10 9 37 37 H 1.09000 * 109.47048 * 294.07455 * 11 10 9 38 38 H 1.09002 * 109.49396 * 59.30739 * 12 11 10 39 39 H 1.09000 * 109.49444 * 179.38768 * 12 11 10 40 40 H 1.09000 * 109.51667 * 52.54901 * 15 13 12 41 41 H 1.08997 * 109.52022 * 172.66492 * 15 13 12 42 42 H 0.97003 * 120.00195 * 180.02562 * 20 19 17 43 43 H 1.08993 * 109.61590 * 174.05824 * 25 16 15 44 44 H 1.09005 * 109.61665 * 294.58764 * 25 16 15 45 45 H 1.09003 * 109.45403 * 64.68534 * 26 25 16 46 46 H 1.08994 * 109.45356 * 184.64160 * 26 25 16 47 47 H 1.07993 * 119.64996 * 180.02562 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3163 -1.1508 0.3596 5 6 4.6975 -1.1034 0.3396 6 6 5.3326 0.0839 -0.0245 7 6 6.8112 0.1452 -0.0430 8 8 7.4609 -0.8786 -0.1246 9 7 7.4370 1.3370 0.0253 10 6 6.6697 2.5867 0.1191 11 6 7.1522 3.3783 1.3380 12 6 8.6690 3.5702 1.2545 13 6 9.3527 2.2030 1.2467 14 1 9.0543 1.6469 2.1353 15 6 10.8709 2.3723 1.2445 16 7 11.2893 2.9626 -0.0339 17 6 12.0629 4.0920 -0.0643 18 1 12.0763 4.7604 0.7840 19 6 12.8300 4.3780 -1.1854 20 7 13.2204 3.4052 -1.9812 21 14 13.3081 6.1435 -1.5643 22 1 14.6529 6.4241 -1.0005 23 1 13.3365 6.3437 -3.0355 24 1 12.3149 7.0664 -0.9584 25 6 10.8586 2.3124 -1.2796 26 6 9.3343 2.1720 -1.2560 27 6 8.9077 1.4194 0.0141 28 1 9.3386 0.4184 0.0338 29 7 4.6278 1.1584 -0.3602 30 6 3.3148 1.1525 -0.3590 31 1 -1.0499 -0.0011 -0.0002 32 1 2.7977 -2.0552 0.6415 33 1 5.2780 -1.9740 0.6070 34 1 6.8235 3.1777 -0.7838 35 1 5.6099 2.3565 0.2282 36 1 6.6632 4.3524 1.3554 37 1 6.9047 2.8312 2.2477 38 1 8.9179 4.1065 0.3389 39 1 9.0112 4.1429 2.1165 40 1 11.1652 3.0296 2.0627 41 1 11.3460 1.3994 1.3701 42 1 13.7567 3.6049 -2.7644 43 1 11.1566 2.9221 -2.1325 44 1 11.3158 1.3257 -1.3544 45 1 8.8784 3.1620 -1.2605 46 1 9.0072 1.6177 -2.1356 47 1 2.7763 2.0458 -0.6385 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021716645.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:16 Heat of formation + Delta-G solvation = 98.919217 kcal Electronic energy + Delta-G solvation = -29704.105290 eV Core-core repulsion = 25854.626978 eV Total energy + Delta-G solvation = -3849.478312 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.14476 -39.76097 -37.94876 -35.60669 -34.75708 -32.98732 -32.50244 -32.19841 -31.08921 -29.85915 -29.67417 -25.96410 -25.53627 -24.20688 -24.02490 -22.43924 -21.97564 -21.45984 -20.01102 -19.59611 -17.79893 -17.44094 -17.06328 -16.64237 -16.09949 -15.85672 -15.21778 -15.06909 -14.81810 -14.55004 -14.12426 -14.00781 -13.80646 -13.60300 -13.40802 -13.13526 -12.91762 -12.60496 -12.46169 -12.28029 -12.13376 -11.93941 -11.40137 -11.33535 -11.17708 -10.85501 -10.74449 -10.60976 -10.48110 -10.30113 -10.23229 -10.08643 -9.95721 -9.91704 -9.64631 -9.48961 -9.21181 -9.02309 -8.46363 -8.17045 -6.73306 -5.78837 -3.10884 0.00947 0.78635 2.19675 2.23894 2.97570 3.03773 3.39420 3.47836 3.50366 3.56216 3.67104 3.93548 4.34209 4.40307 4.52898 4.67964 4.76958 5.09986 5.22338 5.26488 5.31659 5.36245 5.40956 5.45302 5.54879 5.56270 5.66540 5.67999 5.83442 5.93036 6.01759 6.12089 6.17927 6.26947 6.34380 6.37669 6.47913 6.51153 6.59853 6.66194 6.84200 6.86414 6.95668 6.97740 7.01152 7.30392 7.36299 7.60323 7.68789 7.82856 8.23619 8.42248 9.20886 9.87440 10.42919 11.30335 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023749 B = 0.002654 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.697650 B =10546.483871 C =10876.232424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.154 4.154 3 C -0.025 4.025 4 C -0.057 4.057 5 C -0.111 4.111 6 C 0.097 3.903 7 C 0.562 3.438 8 O -0.538 6.538 9 N -0.578 5.578 10 C 0.074 3.926 11 C -0.135 4.135 12 C -0.108 4.108 13 C -0.107 4.107 14 H 0.056 0.944 15 C 0.153 3.847 16 N -0.588 5.588 17 C -0.249 4.249 18 H 0.068 0.932 19 C 0.000 4.000 20 N -0.896 5.896 21 Si 0.893 3.107 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.170 3.830 26 C -0.145 4.145 27 C 0.151 3.849 28 H 0.095 0.905 29 N -0.443 5.443 30 C 0.118 3.882 31 H 0.227 0.773 32 H 0.146 0.854 33 H 0.154 0.846 34 H 0.068 0.932 35 H 0.134 0.866 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.019 0.981 42 H 0.253 0.747 43 H 0.092 0.908 44 H 0.019 0.981 45 H 0.064 0.936 46 H 0.049 0.951 47 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.744 -5.744 5.310 25.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.155 4.155 3 C -0.027 4.027 4 C -0.083 4.083 5 C -0.132 4.132 6 C -0.040 4.040 7 C 0.348 3.652 8 O -0.416 6.416 9 N -0.308 5.308 10 C -0.048 4.048 11 C -0.173 4.173 12 C -0.145 4.145 13 C -0.128 4.128 14 H 0.075 0.925 15 C 0.026 3.974 16 N -0.310 5.310 17 C -0.378 4.378 18 H 0.086 0.914 19 C -0.198 4.198 20 N -0.541 5.541 21 Si 0.723 3.277 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.043 3.957 26 C -0.185 4.185 27 C 0.050 3.950 28 H 0.113 0.887 29 N -0.153 5.153 30 C -0.041 4.041 31 H 0.244 0.756 32 H 0.164 0.836 33 H 0.172 0.828 34 H 0.086 0.914 35 H 0.151 0.849 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.037 0.963 42 H 0.063 0.937 43 H 0.110 0.890 44 H 0.037 0.963 45 H 0.082 0.918 46 H 0.068 0.932 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -23.760 -5.518 4.884 24.876 hybrid contribution -0.405 0.212 -0.036 0.458 sum -24.165 -5.306 4.848 25.211 Atomic orbital electron populations 1.24961 0.95752 0.98374 0.98229 1.19675 0.91569 1.02174 1.02096 1.17119 0.87994 0.95671 1.01953 1.21673 0.93469 0.97725 0.95391 1.22041 0.94434 0.98876 0.97821 1.21512 0.94898 0.90133 0.97407 1.17820 0.85371 0.84045 0.77996 1.90794 1.65763 1.33768 1.51266 1.48429 1.07886 1.05675 1.68785 1.22812 0.99286 0.84527 0.98172 1.21983 0.97628 0.99714 0.97962 1.21492 0.92790 0.97063 1.03180 1.21738 0.98845 0.95874 0.96298 0.92529 1.20779 0.89912 0.96573 0.90180 1.44099 1.57987 1.29661 0.99276 1.19137 1.19261 0.97057 1.02378 0.91447 1.24850 0.97567 0.97292 1.00095 1.70129 1.37327 1.29713 1.16883 0.86423 0.78174 0.85692 0.77433 1.21629 1.21618 1.20496 1.20791 0.87134 0.96667 0.91070 1.22641 1.01240 0.99520 0.95058 1.21497 0.76738 1.00430 0.96376 0.88732 1.67711 1.07539 1.26790 1.13307 1.23137 0.89437 0.97142 0.94381 0.75607 0.83649 0.82830 0.91419 0.84949 0.91376 0.92711 0.90069 0.92480 0.92412 0.96288 0.93687 0.88969 0.96277 0.91769 0.93187 0.81476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 19.25 29.55 0.57 -0.31 16 2 C -0.15 -1.20 13.28 -38.84 -0.52 -1.71 16 3 C -0.03 -0.22 5.75 -106.68 -0.61 -0.83 16 4 C -0.06 -0.48 9.89 -38.94 -0.39 -0.86 16 5 C -0.11 -1.16 9.60 -39.12 -0.38 -1.54 16 6 C 0.10 1.26 6.48 -82.97 -0.54 0.72 16 7 C 0.56 9.14 7.62 -12.26 -0.09 9.04 16 8 O -0.54 -10.23 15.95 5.34 0.09 -10.15 16 9 N -0.58 -9.33 2.66 -165.90 -0.44 -9.78 16 10 C 0.07 1.03 5.52 -3.72 -0.02 1.01 16 11 C -0.13 -1.80 6.08 -26.60 -0.16 -1.96 16 12 C -0.11 -1.76 4.86 -26.75 -0.13 -1.89 16 13 C -0.11 -1.89 2.43 -90.97 -0.22 -2.11 16 14 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 15 C 0.15 3.18 5.90 -3.94 -0.02 3.16 16 16 N -0.59 -14.37 2.66 -172.62 -0.46 -14.83 16 17 C -0.25 -6.69 9.60 -15.06 -0.14 -6.83 16 18 H 0.07 1.78 7.92 -52.48 -0.42 1.36 16 19 C 0.00 0.01 4.76 -17.43 -0.08 -0.07 16 20 N -0.90 -25.97 11.34 55.49 0.63 -25.34 16 21 Si 0.89 21.50 29.62 -169.99 -5.04 16.47 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C 0.17 4.06 5.44 -3.74 -0.02 4.04 16 26 C -0.14 -2.87 5.03 -26.34 -0.13 -3.00 16 27 C 0.15 2.77 2.66 -67.30 -0.18 2.59 16 28 H 0.09 1.92 7.06 -51.93 -0.37 1.55 16 29 N -0.44 -5.11 6.31 -9.49 -0.06 -5.17 16 30 C 0.12 1.07 10.92 -17.15 -0.19 0.88 16 31 H 0.23 0.40 7.80 -54.09 -0.42 -0.02 16 32 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.15 1.51 7.77 -52.48 -0.41 1.10 16 34 H 0.07 0.98 7.25 -51.93 -0.38 0.60 16 35 H 0.13 1.66 3.95 -80.82 -0.32 1.34 16 36 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.52 6.15 -51.93 -0.32 1.20 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.17 7.91 -51.93 -0.41 0.76 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.09 2.46 5.88 -51.93 -0.31 2.15 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.06 1.27 5.32 -51.93 -0.28 0.99 16 46 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -31.67 373.36 -9.47 -41.14 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -6.56 Total: 1.70 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -3.25 Total: 0.33 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -0.33 Total: -55.12 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.04 Total: 16.47 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.67 -9.47 -41.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021716645.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.056 kcal (2) G-P(sol) polarization free energy of solvation -31.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds