Wall clock time and date at job start Tue Mar 31 2020 22:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39991 * 120.46655 * 342.65929 * 3 2 1 5 5 C 1.38209 * 118.36780 * 179.75485 * 4 3 2 6 6 C 1.39492 * 119.20933 * 0.53053 * 5 4 3 7 7 C 1.47994 * 119.56897 * 179.73388 * 6 5 4 8 8 O 1.21533 * 120.00084 * 21.07761 * 7 6 5 9 9 N 1.34778 * 119.99567 * 200.80898 * 7 6 5 10 10 C 1.46953 * 120.84566 * 0.02562 * 9 7 6 11 11 C 1.53140 * 109.01742 * 125.95693 * 10 9 7 12 12 C 1.53114 * 109.48245 * 54.08112 * 11 10 9 13 13 C 1.52856 * 109.34655 * 299.34665 * 12 11 10 14 14 H 1.08999 * 109.25245 * 303.28190 * 13 12 11 15 15 C 1.52764 * 110.20946 * 183.23227 * 13 12 11 16 16 N 1.46900 * 109.19488 * 292.63785 * 15 13 12 17 17 C 1.36933 * 120.77288 * 126.67914 * 16 15 13 18 18 H 1.08008 * 119.99996 * 337.44105 * 17 16 15 19 19 C 1.38816 * 120.00053 * 157.44817 * 17 16 15 20 20 N 1.31613 * 119.99741 * 334.80746 * 19 17 16 21 21 Si 1.86794 * 119.99897 * 154.80998 * 19 17 16 22 22 H 1.48500 * 109.47247 * 94.63920 * 21 19 17 23 23 H 1.48506 * 109.46807 * 214.63699 * 21 19 17 24 24 H 1.48496 * 109.47607 * 334.63489 * 21 19 17 25 25 C 1.46968 * 118.45207 * 306.65219 * 16 15 13 26 26 C 1.53096 * 108.61727 * 54.32073 * 25 16 15 27 27 C 1.47305 * 120.84250 * 179.74155 * 9 7 6 28 28 H 1.08995 * 110.07038 * 355.09140 * 27 9 7 29 29 N 1.32821 * 120.86113 * 359.45334 * 6 5 4 30 30 C 1.31300 * 121.78636 * 0.27978 * 29 6 5 31 31 H 4.52940 * 13.94694 * 0.02562 * 4 2 1 32 32 H 1.07996 * 120.81047 * 0.02562 * 4 3 2 33 33 H 1.08003 * 120.39472 * 180.25348 * 5 4 3 34 34 H 1.08998 * 109.54146 * 245.81657 * 10 9 7 35 35 H 1.08996 * 109.54366 * 5.99994 * 10 9 7 36 36 H 1.09007 * 109.46638 * 174.08089 * 11 10 9 37 37 H 1.09000 * 109.47048 * 294.07455 * 11 10 9 38 38 H 1.09002 * 109.49396 * 59.30739 * 12 11 10 39 39 H 1.09000 * 109.49444 * 179.38768 * 12 11 10 40 40 H 1.09000 * 109.51667 * 52.54901 * 15 13 12 41 41 H 1.08997 * 109.52022 * 172.66492 * 15 13 12 42 42 H 0.97003 * 120.00195 * 180.02562 * 20 19 17 43 43 H 1.08993 * 109.61590 * 174.05824 * 25 16 15 44 44 H 1.09005 * 109.61665 * 294.58764 * 25 16 15 45 45 H 1.09003 * 109.45403 * 64.68534 * 26 25 16 46 46 H 1.08994 * 109.45356 * 184.64160 * 26 25 16 47 47 H 1.07993 * 119.64996 * 180.02562 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3163 -1.1508 0.3596 5 6 4.6975 -1.1034 0.3396 6 6 5.3326 0.0839 -0.0245 7 6 6.8112 0.1452 -0.0430 8 8 7.4609 -0.8786 -0.1246 9 7 7.4370 1.3370 0.0253 10 6 6.6697 2.5867 0.1191 11 6 7.1522 3.3783 1.3380 12 6 8.6690 3.5702 1.2545 13 6 9.3527 2.2030 1.2467 14 1 9.0543 1.6469 2.1353 15 6 10.8709 2.3723 1.2445 16 7 11.2893 2.9626 -0.0339 17 6 12.0629 4.0920 -0.0643 18 1 12.0763 4.7604 0.7840 19 6 12.8300 4.3780 -1.1854 20 7 13.2204 3.4052 -1.9812 21 14 13.3081 6.1435 -1.5643 22 1 14.6529 6.4241 -1.0005 23 1 13.3365 6.3437 -3.0355 24 1 12.3149 7.0664 -0.9584 25 6 10.8586 2.3124 -1.2796 26 6 9.3343 2.1720 -1.2560 27 6 8.9077 1.4194 0.0141 28 1 9.3386 0.4184 0.0338 29 7 4.6278 1.1584 -0.3602 30 6 3.3148 1.1525 -0.3590 31 1 -1.0499 -0.0011 -0.0002 32 1 2.7977 -2.0552 0.6415 33 1 5.2780 -1.9740 0.6070 34 1 6.8235 3.1777 -0.7838 35 1 5.6099 2.3565 0.2282 36 1 6.6632 4.3524 1.3554 37 1 6.9047 2.8312 2.2477 38 1 8.9179 4.1065 0.3389 39 1 9.0112 4.1429 2.1165 40 1 11.1652 3.0296 2.0627 41 1 11.3460 1.3994 1.3701 42 1 13.7567 3.6049 -2.7644 43 1 11.1566 2.9221 -2.1325 44 1 11.3158 1.3257 -1.3544 45 1 8.8784 3.1620 -1.2605 46 1 9.0072 1.6177 -2.1356 47 1 2.7763 2.0458 -0.6385 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021716645.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:15 Heat of formation + Delta-G solvation = 81.975754 kcal Electronic energy + Delta-G solvation = -29704.840014 eV Core-core repulsion = 25854.626978 eV Total energy + Delta-G solvation = -3850.213036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.16931 -40.91834 -39.33346 -37.17586 -35.50116 -34.40755 -33.75061 -33.35295 -32.19136 -31.28427 -31.27512 -27.39120 -26.96967 -25.50121 -24.77378 -23.94823 -23.58697 -22.88692 -21.29590 -20.14934 -19.44807 -18.55348 -18.45336 -17.97121 -17.15600 -16.79756 -16.56915 -16.32608 -16.12482 -15.96430 -15.45256 -15.26649 -15.09873 -14.84225 -14.68196 -14.56384 -14.20694 -14.06776 -13.74662 -13.59649 -13.42001 -13.10918 -12.98116 -12.66061 -12.59407 -12.37588 -12.28349 -12.08953 -11.96779 -11.76735 -11.69888 -11.44821 -11.41490 -11.30426 -11.06634 -10.91112 -10.49595 -10.07680 -9.90487 -9.53908 -8.76984 -7.88367 -5.23174 -0.75990 0.08962 1.36699 1.47026 1.50156 1.60084 1.72351 1.83849 2.14127 2.53370 2.82063 2.95070 3.25176 3.25844 3.50727 3.62258 3.75082 3.79449 3.91356 3.91883 4.04036 4.06734 4.19762 4.26311 4.37930 4.49277 4.60084 4.62880 4.66942 4.77271 4.82675 4.88035 4.91923 4.92573 4.98274 5.05923 5.08426 5.12655 5.18689 5.24789 5.34927 5.37910 5.46642 5.58739 5.64472 5.69172 5.72675 6.34214 6.35737 6.49627 6.59275 7.00416 7.12337 7.85177 8.38014 9.19807 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023749 B = 0.002654 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.697650 B =10546.483871 C =10876.232424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.208 4.208 3 C -0.012 4.012 4 C -0.052 4.052 5 C -0.110 4.110 6 C 0.070 3.930 7 C 0.558 3.442 8 O -0.577 6.577 9 N -0.580 5.580 10 C 0.073 3.927 11 C -0.125 4.125 12 C -0.102 4.102 13 C -0.096 4.096 14 H 0.071 0.929 15 C 0.150 3.850 16 N -0.599 5.599 17 C -0.253 4.253 18 H 0.073 0.927 19 C -0.054 4.054 20 N -0.933 5.933 21 Si 0.960 3.040 22 H -0.289 1.289 23 H -0.295 1.295 24 H -0.267 1.267 25 C 0.179 3.821 26 C -0.126 4.126 27 C 0.158 3.842 28 H 0.069 0.931 29 N -0.455 5.455 30 C 0.116 3.884 31 H 0.263 0.737 32 H 0.173 0.827 33 H 0.153 0.847 34 H 0.061 0.939 35 H 0.154 0.846 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.007 0.993 42 H 0.249 0.751 43 H 0.063 0.937 44 H -0.009 1.009 45 H 0.069 0.931 46 H 0.049 0.951 47 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.174 -4.731 6.569 30.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.208 4.208 3 C -0.014 4.014 4 C -0.077 4.077 5 C -0.131 4.131 6 C -0.065 4.065 7 C 0.346 3.654 8 O -0.458 6.458 9 N -0.309 5.309 10 C -0.048 4.048 11 C -0.163 4.163 12 C -0.140 4.140 13 C -0.117 4.117 14 H 0.089 0.911 15 C 0.024 3.976 16 N -0.322 5.322 17 C -0.382 4.382 18 H 0.091 0.909 19 C -0.249 4.249 20 N -0.580 5.580 21 Si 0.788 3.212 22 H -0.216 1.216 23 H -0.222 1.222 24 H -0.192 1.192 25 C 0.052 3.948 26 C -0.166 4.166 27 C 0.055 3.945 28 H 0.087 0.913 29 N -0.166 5.166 30 C -0.044 4.044 31 H 0.279 0.721 32 H 0.191 0.809 33 H 0.171 0.829 34 H 0.079 0.921 35 H 0.170 0.830 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.025 0.975 42 H 0.058 0.942 43 H 0.081 0.919 44 H 0.009 0.991 45 H 0.088 0.912 46 H 0.067 0.933 47 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -28.222 -4.492 6.175 29.237 hybrid contribution 0.775 -0.193 -0.407 0.896 sum -27.448 -4.685 5.768 28.436 Atomic orbital electron populations 1.25881 0.96447 0.95657 0.94946 1.19770 0.91775 1.04669 1.04631 1.17280 0.88975 0.95273 0.99870 1.21950 0.92414 0.98854 0.94517 1.22082 0.95480 0.97983 0.97507 1.20994 0.92823 0.91837 1.00882 1.18364 0.87034 0.83253 0.76734 1.90759 1.67143 1.34962 1.52904 1.48396 1.06691 1.06847 1.68956 1.23032 1.00167 0.83362 0.98213 1.21936 0.95217 1.01127 0.97994 1.21417 0.94972 0.95393 1.02194 1.21582 0.96434 0.97214 0.96430 0.91066 1.20915 0.92147 0.95787 0.88784 1.44281 1.57900 1.29573 1.00475 1.19475 1.18648 0.97682 1.02441 0.90930 1.25617 0.98258 1.00748 1.00273 1.70274 1.38714 1.31613 1.17398 0.85374 0.77877 0.81251 0.76658 1.21560 1.22180 1.19203 1.20536 0.89658 0.94378 0.90220 1.22364 0.98035 1.00073 0.96151 1.21130 0.78800 0.98797 0.95771 0.91264 1.67468 1.08790 1.26548 1.13765 1.23553 0.88496 0.98419 0.93891 0.72105 0.80915 0.82909 0.92068 0.83021 0.88780 0.91738 0.92550 0.91729 0.91701 0.97475 0.94205 0.91908 0.99103 0.91217 0.93253 0.78888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 19.25 74.32 1.43 0.69 16 2 C -0.21 -2.47 13.28 30.01 0.40 -2.07 16 3 C -0.01 -0.17 5.75 -21.20 -0.12 -0.29 16 4 C -0.05 -0.75 9.89 22.69 0.22 -0.52 16 5 C -0.11 -2.20 9.60 22.57 0.22 -1.98 16 6 C 0.07 1.77 6.48 41.89 0.27 2.04 16 7 C 0.56 18.49 7.62 86.83 0.66 19.15 16 8 O -0.58 -22.93 15.95 -3.82 -0.06 -22.99 16 9 N -0.58 -18.81 2.66 -797.06 -2.12 -20.93 16 10 C 0.07 1.94 5.52 86.34 0.48 2.41 16 11 C -0.12 -3.04 6.08 30.68 0.19 -2.85 16 12 C -0.10 -3.21 4.86 30.58 0.15 -3.06 16 13 C -0.10 -3.40 2.43 -11.02 -0.03 -3.43 16 14 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 15 C 0.15 6.39 5.90 86.22 0.51 6.90 16 16 N -0.60 -30.34 2.66 -700.06 -1.86 -32.20 16 17 C -0.25 -13.82 9.60 84.04 0.81 -13.01 16 18 H 0.07 3.83 7.92 -2.91 -0.02 3.81 16 19 C -0.05 -3.03 4.76 84.86 0.40 -2.63 16 20 N -0.93 -56.34 11.34 21.65 0.25 -56.09 16 21 Si 0.96 45.07 29.62 68.60 2.03 47.10 16 22 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 23 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 C 0.18 9.05 5.44 86.32 0.47 9.52 16 26 C -0.13 -5.23 5.03 30.85 0.16 -5.07 16 27 C 0.16 5.99 2.66 44.96 0.12 6.11 16 28 H 0.07 2.98 7.06 -2.39 -0.02 2.97 16 29 N -0.45 -9.78 6.31 -183.93 -1.16 -10.94 16 30 C 0.12 1.81 10.92 85.18 0.93 2.74 16 31 H 0.26 -0.59 7.80 -4.42 -0.03 -0.63 16 32 H 0.17 1.45 8.06 -2.91 -0.02 1.42 16 33 H 0.15 2.99 7.77 -2.91 -0.02 2.97 16 34 H 0.06 1.69 7.25 -2.39 -0.02 1.68 16 35 H 0.15 3.51 3.95 -59.44 -0.23 3.28 16 36 H 0.09 1.86 8.14 -2.38 -0.02 1.85 16 37 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.06 2.07 6.15 -2.39 -0.01 2.06 16 39 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.06 2.64 7.91 -2.39 -0.02 2.62 16 41 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 43 H 0.06 3.55 5.88 -2.39 -0.01 3.53 16 44 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 45 H 0.07 2.81 5.32 -2.39 -0.01 2.80 16 46 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.19 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -72.26 373.36 5.09 -67.17 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.76 Total: 14.26 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 7.26 Total: 14.64 kcal Atomic # 7 Polarization: -115.27 SS G_CDS: -4.90 Total: -120.17 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.06 Total: -22.99 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -72.26 5.09 -67.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021716645.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.144 kcal (2) G-P(sol) polarization free energy of solvation -72.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds