Wall clock time and date at job start Tue Mar 31 2020 22:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39989 * 120.46078 * 129.47036 * 3 2 1 5 5 C 1.38217 * 118.36791 * 179.97438 * 4 3 2 6 6 C 1.39495 * 119.20876 * 0.02562 * 5 4 3 7 7 C 1.47985 * 119.57096 * 179.97438 * 6 5 4 8 8 O 1.21534 * 120.00200 * 22.34055 * 7 6 5 9 9 N 1.34776 * 119.99876 * 202.34869 * 7 6 5 10 10 C 1.46935 * 120.55413 * 186.20435 * 9 7 6 11 11 C 1.53338 * 108.68920 * 125.66601 * 10 9 7 12 12 C 1.52109 * 109.44320 * 53.30508 * 11 10 9 13 13 C 1.54394 * 110.50698 * 64.08611 * 12 11 10 14 14 C 1.54461 * 102.86651 * 83.33508 * 13 12 11 15 15 N 1.47080 * 107.29618 * 21.50342 * 14 13 12 16 16 C 1.36941 * 125.62441 * 180.96368 * 15 14 13 17 17 H 1.07996 * 119.99837 * 189.95666 * 16 15 14 18 18 C 1.38809 * 119.99986 * 9.96018 * 16 15 14 19 19 N 1.31615 * 120.00000 * 207.82622 * 18 16 15 20 20 Si 1.86801 * 120.00167 * 27.83484 * 18 16 15 21 21 H 1.48512 * 109.46552 * 275.07943 * 20 18 16 22 22 H 1.48496 * 109.47522 * 35.07700 * 20 18 16 23 23 H 1.48502 * 109.47395 * 155.08605 * 20 18 16 24 24 C 1.47567 * 108.74757 * 1.23376 * 15 14 13 25 25 C 1.52106 * 111.59791 * 300.69640 * 12 11 10 26 26 C 1.46931 * 120.55403 * 6.21670 * 9 7 6 27 27 N 1.32827 * 120.85624 * 0.25271 * 6 5 4 28 28 C 1.31292 * 121.78887 * 359.46716 * 27 6 5 29 29 H 4.52937 * 13.94608 * 359.97438 * 4 2 1 30 30 H 1.07994 * 120.81928 * 359.95595 * 4 3 2 31 31 H 1.07997 * 120.40089 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.60113 * 5.90293 * 10 9 7 33 33 H 1.09004 * 109.73178 * 245.50536 * 10 9 7 34 34 H 1.08993 * 109.47944 * 293.31587 * 11 10 9 35 35 H 1.09003 * 109.47813 * 173.29753 * 11 10 9 36 36 H 1.08994 * 110.73887 * 324.98789 * 13 12 11 37 37 H 1.09000 * 110.73143 * 201.67219 * 13 12 11 38 38 H 1.09000 * 109.87522 * 262.07502 * 14 13 12 39 39 H 1.09001 * 109.87624 * 140.92760 * 14 13 12 40 40 H 0.97001 * 119.99886 * 5.12456 * 19 18 16 41 41 H 1.08996 * 110.38057 * 95.25765 * 24 15 14 42 42 H 1.09001 * 110.38006 * 217.61496 * 24 15 14 43 43 H 1.09003 * 109.47408 * 179.29394 * 25 12 11 44 44 H 1.08999 * 109.47380 * 299.30245 * 25 12 11 45 45 H 1.09002 * 109.60250 * 354.08913 * 26 9 7 46 46 H 1.09003 * 109.59809 * 114.56646 * 26 9 7 47 47 H 1.08006 * 119.65277 * 180.25210 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3153 0.7680 -0.9315 5 6 4.6966 0.7370 -0.8922 6 6 5.3327 -0.0520 0.0663 7 6 6.8113 -0.0917 0.1152 8 8 7.4597 0.8192 -0.3612 9 7 7.4387 -1.1380 0.6879 10 6 8.8973 -1.1283 0.8653 11 6 9.2144 -1.3908 2.3424 12 6 8.5136 -2.6637 2.7923 13 6 9.0652 -3.8848 2.0251 14 6 10.3348 -4.2492 2.8257 15 7 10.1825 -3.6763 4.1717 16 6 11.1022 -3.7597 5.1829 17 1 10.8358 -3.4484 6.1822 18 6 12.3768 -4.2444 4.9236 19 7 13.0629 -4.8356 5.8786 20 14 13.1183 -4.0574 3.2193 21 1 12.6686 -5.1805 2.3580 22 1 12.6760 -2.7703 2.6254 23 1 14.5999 -4.0732 3.3196 24 6 8.8724 -3.0022 4.2548 25 6 7.0056 -2.5633 2.6206 26 6 6.6757 -2.3074 1.1452 27 7 4.6287 -0.7725 0.9320 28 6 3.3158 -0.7660 0.9308 29 1 -1.0500 -0.0008 0.0002 30 1 2.7961 1.3693 -1.6631 31 1 5.2765 1.3160 -1.5956 32 1 9.2948 -0.1564 0.5731 33 1 9.3479 -1.9075 0.2505 34 1 8.8650 -0.5517 2.9438 35 1 10.2911 -1.5048 2.4683 36 1 9.3195 -3.6142 1.0004 37 1 8.3493 -4.7066 2.0420 38 1 11.2137 -3.8255 2.3397 39 1 10.4323 -5.3328 2.8930 40 1 12.6512 -4.9993 6.7415 41 1 8.1278 -3.6715 4.6856 42 1 8.9516 -2.0901 4.8463 43 1 6.5405 -3.4957 2.9406 44 1 6.6250 -1.7407 3.2261 45 1 5.6086 -2.1127 1.0376 46 1 6.9523 -3.1791 0.5521 47 1 2.7778 -1.3620 1.6533 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035245071.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:35 Heat of formation + Delta-G solvation = 106.966478 kcal Electronic energy + Delta-G solvation = -29379.917294 eV Core-core repulsion = 25530.787937 eV Total energy + Delta-G solvation = -3849.129357 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.30080 -39.94793 -38.61571 -36.04877 -34.90966 -33.18746 -32.72342 -31.59468 -31.21574 -30.56483 -28.94888 -27.28468 -25.51555 -24.22782 -23.59773 -23.14600 -22.71144 -20.77396 -20.15957 -19.67981 -18.49912 -17.68354 -17.28221 -16.92474 -16.21312 -16.04473 -15.48510 -15.21951 -15.10637 -14.90067 -14.65821 -14.16525 -13.92723 -13.79757 -13.51384 -13.35002 -13.10625 -12.97942 -12.66520 -12.47001 -12.22976 -12.02658 -11.70323 -11.48406 -11.21979 -11.05618 -11.00725 -10.90608 -10.61281 -10.46002 -10.33221 -10.25386 -10.20448 -9.88579 -9.49477 -9.37183 -9.23476 -9.07947 -8.57162 -8.40859 -6.99243 -6.30824 -3.11469 -0.12105 0.66932 2.07889 2.12554 2.79117 2.82443 3.42457 3.47645 3.56041 3.56937 3.74407 3.80389 4.21721 4.25897 4.54943 4.64633 4.67862 4.87952 4.94545 5.01033 5.10267 5.15507 5.22235 5.27198 5.38837 5.44244 5.47910 5.49540 5.57786 5.70670 5.77945 5.82853 5.84525 5.91492 6.02296 6.09307 6.19551 6.23812 6.32941 6.41979 6.45493 6.58093 6.63122 6.73132 6.84291 6.89247 6.90090 7.15508 7.34600 7.77534 7.96046 8.39833 9.08349 9.64946 10.32909 11.18601 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024849 B = 0.002599 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.554003 B =10769.978516 C =11485.961008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.158 4.158 3 C -0.020 4.020 4 C -0.058 4.058 5 C -0.110 4.110 6 C 0.093 3.907 7 C 0.567 3.433 8 O -0.537 6.537 9 N -0.582 5.582 10 C 0.109 3.891 11 C -0.112 4.112 12 C -0.076 4.076 13 C -0.122 4.122 14 C 0.119 3.881 15 N -0.609 5.609 16 C -0.327 4.327 17 H 0.076 0.924 18 C -0.016 4.016 19 N -0.916 5.916 20 Si 1.057 2.943 21 H -0.295 1.295 22 H -0.293 1.293 23 H -0.301 1.301 24 C 0.147 3.853 25 C -0.107 4.107 26 C 0.074 3.926 27 N -0.440 5.440 28 C 0.120 3.880 29 H 0.228 0.772 30 H 0.146 0.854 31 H 0.154 0.846 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.025 0.975 39 H 0.036 0.964 40 H 0.263 0.737 41 H 0.025 0.975 42 H 0.042 0.958 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.137 0.863 46 H 0.060 0.940 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.571 9.124 -15.499 31.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.159 4.159 3 C -0.023 4.023 4 C -0.083 4.083 5 C -0.131 4.131 6 C -0.044 4.044 7 C 0.353 3.647 8 O -0.414 6.414 9 N -0.313 5.313 10 C -0.013 4.013 11 C -0.150 4.150 12 C -0.077 4.077 13 C -0.159 4.159 14 C -0.005 4.005 15 N -0.336 5.336 16 C -0.454 4.454 17 H 0.094 0.906 18 C -0.217 4.217 19 N -0.557 5.557 20 Si 0.890 3.110 21 H -0.223 1.223 22 H -0.221 1.221 23 H -0.229 1.229 24 C 0.021 3.979 25 C -0.146 4.146 26 C -0.049 4.049 27 N -0.151 5.151 28 C -0.040 4.040 29 H 0.244 0.756 30 H 0.164 0.836 31 H 0.171 0.829 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.042 0.958 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.043 0.957 42 H 0.060 0.940 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.154 0.846 46 H 0.078 0.922 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -23.242 8.837 -15.925 29.527 hybrid contribution -1.979 0.650 0.387 2.118 sum -25.220 9.487 -15.538 31.104 Atomic orbital electron populations 1.24990 0.95780 0.97987 0.98061 1.19647 0.91561 1.02331 1.02336 1.17131 0.88063 0.99248 0.97818 1.21685 0.93460 0.96206 0.96951 1.22035 0.94482 0.97949 0.98601 1.21374 0.94605 0.94881 0.93547 1.17823 0.85596 0.82513 0.78762 1.90793 1.65983 1.37444 1.47180 1.47975 1.08190 1.17652 1.57473 1.21830 0.78746 1.03226 0.97459 1.21652 1.02102 0.97086 0.94194 1.21183 0.94143 0.94676 0.97684 1.22635 0.97810 0.97146 0.98341 1.21636 0.95152 0.97130 0.86630 1.44834 1.16313 1.62374 1.10063 1.20017 0.93180 1.43612 0.88573 0.90612 1.25743 0.93484 0.97252 1.05191 1.70885 1.41175 1.37843 1.05750 0.83933 0.75037 0.75994 0.76031 1.22325 1.22078 1.22925 1.21581 0.88485 0.95250 0.92590 1.21603 0.95165 1.02174 0.95639 1.22870 1.00273 0.86557 0.95159 1.67598 1.07681 1.17525 1.22312 1.23144 0.89290 0.95637 0.95881 0.75551 0.83578 0.82869 0.89117 0.90983 0.91749 0.89591 0.91618 0.91459 0.95757 0.94630 0.92703 0.95728 0.94018 0.90783 0.91486 0.84637 0.92218 0.81313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 19.25 29.55 0.57 -0.17 16 2 C -0.16 -1.09 13.28 -38.84 -0.52 -1.60 16 3 C -0.02 -0.15 5.75 -106.68 -0.61 -0.77 16 4 C -0.06 -0.40 9.89 -38.93 -0.39 -0.79 16 5 C -0.11 -0.96 9.60 -39.12 -0.38 -1.34 16 6 C 0.09 1.02 6.42 -82.97 -0.53 0.49 16 7 C 0.57 7.75 7.58 -12.27 -0.09 7.66 16 8 O -0.54 -8.67 15.96 5.34 0.09 -8.58 16 9 N -0.58 -7.73 2.96 -173.64 -0.51 -8.25 16 10 C 0.11 1.55 6.10 -3.63 -0.02 1.53 16 11 C -0.11 -1.80 4.87 -27.01 -0.13 -1.94 16 12 C -0.08 -1.21 0.55 -153.98 -0.08 -1.30 16 13 C -0.12 -2.01 4.92 -25.23 -0.12 -2.13 16 14 C 0.12 2.62 4.60 -2.96 -0.01 2.61 16 15 N -0.61 -14.96 3.28 -170.18 -0.56 -15.52 16 16 C -0.33 -9.45 10.42 -15.06 -0.16 -9.61 16 17 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 18 C -0.02 -0.48 5.42 -17.43 -0.09 -0.57 16 19 N -0.92 -29.01 13.70 55.49 0.76 -28.25 16 20 Si 1.06 27.19 24.70 -169.99 -4.20 22.99 16 21 H -0.30 -7.19 6.76 56.52 0.38 -6.81 16 22 H -0.29 -7.15 6.79 56.52 0.38 -6.77 16 23 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 24 C 0.15 2.94 6.16 -2.75 -0.02 2.92 16 25 C -0.11 -1.38 4.84 -27.01 -0.13 -1.51 16 26 C 0.07 0.86 5.84 -3.63 -0.02 0.84 16 27 N -0.44 -4.40 6.46 -9.49 -0.06 -4.46 16 28 C 0.12 0.94 10.92 -17.15 -0.19 0.76 16 29 H 0.23 0.25 7.80 -54.09 -0.42 -0.17 16 30 H 0.15 0.66 8.06 -52.49 -0.42 0.23 16 31 H 0.15 1.22 7.79 -52.49 -0.41 0.81 16 32 H 0.09 1.33 7.03 -51.93 -0.37 0.97 16 33 H 0.07 0.98 6.56 -51.93 -0.34 0.64 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.09 1.60 7.82 -51.93 -0.41 1.20 16 36 H 0.07 0.98 6.18 -51.93 -0.32 0.66 16 37 H 0.07 1.01 7.98 -51.93 -0.41 0.60 16 38 H 0.03 0.57 3.64 -51.93 -0.19 0.38 16 39 H 0.04 0.83 7.96 -51.93 -0.41 0.42 16 40 H 0.26 8.23 8.73 -40.82 -0.36 7.88 16 41 H 0.02 0.49 8.00 -51.93 -0.42 0.08 16 42 H 0.04 0.86 8.03 -51.93 -0.42 0.44 16 43 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.14 1.45 3.87 -79.30 -0.31 1.15 16 46 H 0.06 0.67 7.62 -51.93 -0.40 0.27 16 47 H 0.17 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 371.67 15.07 5.60 5.60 Total: -1.00 -34.62 371.67 -8.35 -42.97 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.54 Total: -1.57 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -2.93 Total: -4.93 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.37 Total: -56.48 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.09 Total: -8.58 kcal Atomic # 14 Polarization: 27.19 SS G_CDS: -4.20 Total: 22.99 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.62 -8.35 -42.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035245071.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.941 kcal (2) G-P(sol) polarization free energy of solvation -34.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds