Wall clock time and date at job start Tue Mar 31 2020 22:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39733 * 119.59202 * 356.74243 * 3 2 1 5 5 C 1.37963 * 119.19968 * 179.97438 * 4 3 2 6 6 C 1.40234 * 118.40483 * 359.97438 * 5 4 3 7 7 C 1.47678 * 120.44696 * 180.02562 * 6 5 4 8 8 O 1.21579 * 119.99577 * 34.33329 * 7 6 5 9 9 N 1.34771 * 120.00071 * 214.34180 * 7 6 5 10 10 C 1.46941 * 120.55076 * 185.14392 * 9 7 6 11 11 C 1.53341 * 108.68375 * 125.66614 * 10 9 7 12 12 C 1.52110 * 109.44488 * 53.30695 * 11 10 9 13 13 C 1.54390 * 110.50916 * 64.08614 * 12 11 10 14 14 C 1.54456 * 102.87108 * 83.33078 * 13 12 11 15 15 N 1.47081 * 107.29556 * 21.51009 * 14 13 12 16 16 C 1.36936 * 125.62976 * 180.96627 * 15 14 13 17 17 H 1.08001 * 120.00016 * 176.45552 * 16 15 14 18 18 C 1.38813 * 119.99814 * 356.45398 * 16 15 14 19 19 N 1.31620 * 119.99799 * 159.33975 * 18 16 15 20 20 Si 1.86801 * 119.99889 * 339.33906 * 18 16 15 21 21 H 1.48504 * 109.47042 * 185.47620 * 20 18 16 22 22 H 1.48502 * 109.47200 * 305.47466 * 20 18 16 23 23 H 1.48493 * 109.47426 * 65.47688 * 20 18 16 24 24 C 1.47575 * 108.73978 * 1.22636 * 15 14 13 25 25 C 1.52107 * 111.59735 * 300.69419 * 12 11 10 26 26 C 1.46926 * 120.55736 * 5.16088 * 9 7 6 27 27 C 1.39664 * 119.11872 * 0.27443 * 6 5 4 28 28 N 1.31481 * 120.70530 * 359.43043 * 27 6 5 29 29 H 4.51266 * 14.17716 * 359.97438 * 4 2 1 30 30 H 1.07999 * 120.39343 * 359.95871 * 4 3 2 31 31 H 1.07999 * 120.79847 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.60247 * 5.91097 * 10 9 7 33 33 H 1.08992 * 109.73647 * 245.50680 * 10 9 7 34 34 H 1.08997 * 109.48337 * 293.31420 * 11 10 9 35 35 H 1.09006 * 109.47683 * 173.29521 * 11 10 9 36 36 H 1.09007 * 110.73186 * 324.99032 * 13 12 11 37 37 H 1.09002 * 110.73644 * 201.68059 * 13 12 11 38 38 H 1.08992 * 109.88290 * 262.08148 * 14 13 12 39 39 H 1.09002 * 109.87122 * 140.92690 * 14 13 12 40 40 H 0.96991 * 119.99962 * 5.01642 * 19 18 16 41 41 H 1.09002 * 110.37501 * 95.27028 * 24 15 14 42 42 H 1.09009 * 110.37399 * 217.60790 * 24 15 14 43 43 H 1.09000 * 109.47595 * 179.29204 * 25 12 11 44 44 H 1.09004 * 109.47577 * 299.30312 * 25 12 11 45 45 H 1.09006 * 109.60046 * 354.08885 * 26 9 7 46 46 H 1.08995 * 109.60291 * 114.56550 * 26 9 7 47 47 H 1.07996 * 119.64657 * 179.70211 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2966 -1.2122 0.0690 5 6 4.6762 -1.2021 0.0680 6 6 5.3343 0.0342 -0.0035 7 6 6.8097 0.0974 -0.0082 8 8 7.4538 -0.7779 -0.5533 9 7 7.4421 1.1252 0.5919 10 6 8.9022 1.2606 0.4986 11 6 9.2325 2.6570 -0.0422 12 6 8.5356 3.7075 0.8089 13 6 9.0801 3.6815 2.2534 14 6 10.3569 4.5452 2.1554 15 7 10.2167 5.3995 0.9664 16 6 11.1454 6.3001 0.5172 17 1 10.9727 6.8411 -0.4014 18 6 12.3087 6.5176 1.2426 19 7 13.3628 7.0419 0.6542 20 14 12.3780 6.0662 3.0540 21 1 13.6723 6.5156 3.6269 22 1 11.2612 6.7305 3.7728 23 1 12.2558 4.5938 3.2023 24 6 8.9074 5.1304 0.3409 25 6 7.0262 3.5201 0.8050 26 6 6.6831 2.1287 1.3505 27 6 4.5758 1.2053 -0.0648 28 7 3.2619 1.1549 -0.0672 29 1 -1.0500 -0.0011 0.0006 30 1 2.7568 -2.1460 0.1229 31 1 5.2359 -2.1242 0.1209 32 1 9.2972 0.5034 -0.1787 33 1 9.3472 1.1361 1.4857 34 1 8.8886 2.7382 -1.0734 35 1 10.3103 2.8156 -0.0050 36 1 9.3254 2.6631 2.5551 37 1 8.3643 4.1278 2.9438 38 1 11.2314 3.9033 2.0496 39 1 10.4547 5.1644 3.0472 40 1 13.3048 7.3434 -0.2658 41 1 8.1667 5.8519 0.6858 42 1 8.9921 5.1621 -0.7454 43 1 6.5638 4.2811 1.4337 44 1 6.6510 3.6136 -0.2142 45 1 5.6151 1.9438 1.2349 46 1 6.9542 2.0722 2.4047 47 1 5.0738 2.1622 -0.1151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035246921.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:54 Heat of formation + Delta-G solvation = 115.903120 kcal Electronic energy + Delta-G solvation = -29344.964366 eV Core-core repulsion = 25496.222531 eV Total energy + Delta-G solvation = -3848.741835 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.41911 -40.05849 -38.74666 -36.23204 -34.50545 -33.25853 -33.02994 -32.01290 -31.35414 -30.44294 -29.07935 -27.46790 -25.52953 -24.44307 -23.62688 -23.18957 -22.94299 -20.78808 -20.23025 -19.91384 -18.56600 -17.82382 -17.26954 -17.04329 -16.52120 -16.20260 -15.48666 -15.35801 -15.04798 -14.94097 -14.66234 -14.24324 -13.88900 -13.72985 -13.69209 -13.40357 -13.27764 -13.09081 -12.76896 -12.48106 -12.32553 -11.88221 -11.69566 -11.43708 -11.36243 -11.29566 -11.21338 -10.95420 -10.63163 -10.42633 -10.41294 -10.28693 -10.24143 -9.93181 -9.83888 -9.47025 -9.25933 -8.93768 -8.75756 -8.55222 -7.04905 -6.29926 -3.16420 -0.08665 0.69612 2.08858 2.13636 2.65049 2.77661 3.38972 3.40568 3.49824 3.50015 3.70617 4.05423 4.11797 4.32416 4.51766 4.58513 4.61478 4.61890 4.68678 4.83005 4.96390 5.03191 5.07355 5.16708 5.20076 5.28010 5.36001 5.49402 5.51518 5.54258 5.60282 5.64685 5.71906 5.78446 5.87387 5.91550 5.98011 6.02098 6.18786 6.27772 6.31323 6.41496 6.48437 6.62507 6.74367 6.79128 6.93301 7.13832 7.28745 7.67721 7.85259 8.34617 9.06730 9.60065 10.26196 11.20764 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024051 B = 0.002530 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.937449 B =11066.344649 C =11555.052428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.153 4.153 3 C 0.244 3.756 4 C -0.151 4.151 5 C -0.019 4.019 6 C -0.175 4.175 7 C 0.563 3.437 8 O -0.534 6.534 9 N -0.597 5.597 10 C 0.112 3.888 11 C -0.112 4.112 12 C -0.071 4.071 13 C -0.123 4.123 14 C 0.112 3.888 15 N -0.611 5.611 16 C -0.323 4.323 17 H 0.077 0.923 18 C -0.026 4.026 19 N -0.927 5.927 20 Si 1.070 2.930 21 H -0.303 1.303 22 H -0.300 1.300 23 H -0.282 1.282 24 C 0.148 3.852 25 C -0.121 4.121 26 C 0.080 3.920 27 C 0.130 3.870 28 N -0.470 5.470 29 H 0.231 0.769 30 H 0.147 0.853 31 H 0.151 0.849 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.047 0.953 39 H 0.026 0.974 40 H 0.261 0.739 41 H 0.023 0.977 42 H 0.044 0.956 43 H 0.082 0.918 44 H 0.069 0.931 45 H 0.098 0.902 46 H 0.077 0.923 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.816 -17.227 1.608 29.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.154 4.154 3 C 0.109 3.891 4 C -0.171 4.171 5 C -0.045 4.045 6 C -0.180 4.180 7 C 0.350 3.650 8 O -0.412 6.412 9 N -0.329 5.329 10 C -0.009 4.009 11 C -0.150 4.150 12 C -0.072 4.072 13 C -0.161 4.161 14 C -0.012 4.012 15 N -0.339 5.339 16 C -0.451 4.451 17 H 0.095 0.905 18 C -0.225 4.225 19 N -0.569 5.569 20 Si 0.905 3.095 21 H -0.231 1.231 22 H -0.229 1.229 23 H -0.210 1.210 24 C 0.022 3.978 25 C -0.159 4.159 26 C -0.042 4.042 27 C -0.029 4.029 28 N -0.178 5.178 29 H 0.248 0.752 30 H 0.165 0.835 31 H 0.169 0.831 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.043 0.957 40 H 0.071 0.929 41 H 0.040 0.960 42 H 0.062 0.938 43 H 0.101 0.899 44 H 0.087 0.913 45 H 0.116 0.884 46 H 0.095 0.905 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -22.805 -16.897 2.538 28.496 hybrid contribution -0.781 -0.362 -1.200 1.476 sum -23.585 -17.259 1.338 29.257 Atomic orbital electron populations 1.24996 0.95659 0.97913 0.96291 1.19260 0.91015 1.02156 1.02983 1.16758 0.88245 0.89114 0.94992 1.22016 0.94334 0.98879 1.01858 1.21616 0.93657 0.97790 0.91402 1.21132 0.94994 0.95544 1.06349 1.17979 0.86462 0.81776 0.78784 1.90802 1.67108 1.37973 1.45281 1.48012 1.08418 1.25255 1.51248 1.21818 0.78159 0.98626 1.02340 1.21665 1.02404 0.92126 0.98847 1.21088 0.93232 0.96898 0.95968 1.22672 0.97886 0.99816 0.95731 1.21995 0.96128 0.92694 0.90412 1.44868 1.15871 1.45008 1.28117 1.20099 0.98817 1.19264 1.06889 0.90504 1.25753 0.91086 1.00264 1.05415 1.70925 1.26640 1.44415 1.14883 0.83861 0.73806 0.75944 0.75924 1.23091 1.22922 1.20967 1.21521 0.88118 0.91397 0.96779 1.21783 0.96480 0.95674 1.01965 1.22509 0.97154 0.88161 0.96381 1.23436 0.88645 0.98355 0.92419 1.67838 1.09527 1.28025 1.12395 0.75215 0.83511 0.83099 0.88899 0.90843 0.91680 0.89198 0.91312 0.91512 0.93569 0.95720 0.92916 0.95958 0.93813 0.89934 0.91281 0.88424 0.90465 0.80203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.79 19.25 29.55 0.57 -0.22 16 2 C -0.15 -1.35 13.43 -38.84 -0.52 -1.87 16 3 C 0.24 2.38 6.59 -84.91 -0.56 1.82 16 4 C -0.15 -1.18 9.77 -39.12 -0.38 -1.56 16 5 C -0.02 -0.16 9.73 -38.93 -0.38 -0.54 16 6 C -0.18 -1.80 5.46 -104.76 -0.57 -2.37 16 7 C 0.56 6.95 7.41 -12.41 -0.09 6.86 16 8 O -0.53 -8.27 16.28 5.30 0.09 -8.19 16 9 N -0.60 -6.79 2.96 -173.75 -0.51 -7.30 16 10 C 0.11 1.40 6.11 -3.63 -0.02 1.38 16 11 C -0.11 -1.60 4.87 -27.01 -0.13 -1.73 16 12 C -0.07 -1.01 0.55 -153.99 -0.08 -1.10 16 13 C -0.12 -1.86 4.92 -25.24 -0.12 -1.99 16 14 C 0.11 2.34 4.20 -2.96 -0.01 2.33 16 15 N -0.61 -14.43 3.35 -170.18 -0.57 -15.00 16 16 C -0.32 -9.15 10.53 -15.06 -0.16 -9.31 16 17 H 0.08 2.31 8.06 -52.49 -0.42 1.88 16 18 C -0.03 -0.76 5.49 -17.43 -0.10 -0.85 16 19 N -0.93 -29.16 13.70 55.49 0.76 -28.40 16 20 Si 1.07 26.68 24.56 -169.99 -4.18 22.50 16 21 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 22 H -0.30 -7.26 6.92 56.52 0.39 -6.87 16 23 H -0.28 -6.36 5.21 56.52 0.29 -6.07 16 24 C 0.15 2.78 6.16 -2.75 -0.02 2.76 16 25 C -0.12 -1.29 4.51 -27.01 -0.12 -1.41 16 26 C 0.08 0.75 5.27 -3.63 -0.02 0.74 16 27 C 0.13 1.28 8.57 -17.17 -0.15 1.13 16 28 N -0.47 -5.11 10.26 -10.79 -0.11 -5.23 16 29 H 0.23 0.40 7.80 -54.09 -0.42 -0.03 16 30 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 31 H 0.15 1.13 8.04 -52.49 -0.42 0.71 16 32 H 0.09 1.24 7.02 -51.93 -0.36 0.87 16 33 H 0.07 0.87 6.55 -51.93 -0.34 0.53 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.51 7.82 -51.93 -0.41 1.10 16 36 H 0.07 0.91 6.18 -51.92 -0.32 0.59 16 37 H 0.07 0.92 7.98 -51.93 -0.41 0.50 16 38 H 0.05 1.02 6.43 -51.93 -0.33 0.69 16 39 H 0.03 0.56 4.32 -51.93 -0.22 0.33 16 40 H 0.26 8.12 8.73 -40.82 -0.36 7.76 16 41 H 0.02 0.42 8.00 -51.93 -0.42 0.00 16 42 H 0.04 0.85 8.04 -51.92 -0.42 0.43 16 43 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 44 H 0.07 0.70 7.60 -51.93 -0.39 0.31 16 45 H 0.10 0.80 3.49 -51.93 -0.18 0.62 16 46 H 0.08 0.69 7.62 -51.93 -0.40 0.29 16 47 H 0.18 1.55 4.98 -52.49 -0.26 1.29 16 LS Contribution 366.11 15.07 5.52 5.52 Total: -1.00 -35.05 366.11 -8.15 -43.20 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -6.27 Total: -1.18 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -2.87 Total: -5.93 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.43 Total: -55.92 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.09 Total: -8.19 kcal Atomic # 14 Polarization: 26.68 SS G_CDS: -4.18 Total: 22.50 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.05 -8.15 -43.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035246921.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.106 kcal (2) G-P(sol) polarization free energy of solvation -35.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds