Wall clock time and date at job start Tue Mar 31 2020 22:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 H 1.08997 * 109.49913 * 305.00198 * 3 2 1 5 5 C 1.53192 * 109.49733 * 65.06580 * 3 2 1 6 6 N 1.46934 * 108.77563 * 174.55337 * 5 3 2 7 7 C 1.34769 * 120.60966 * 126.41620 * 6 5 3 8 8 O 1.21286 * 119.99870 * 0.02770 * 7 6 5 9 9 C 1.50704 * 120.00359 * 180.02562 * 7 6 5 10 10 N 1.46499 * 109.46918 * 180.02562 * 9 7 6 11 11 C 1.36379 * 125.95973 * 269.68167 * 10 9 7 12 12 O 1.35623 * 125.98859 * 0.04730 * 11 10 9 13 13 N 1.30909 * 108.01950 * 179.89103 * 11 10 9 14 14 N 1.40108 * 107.94121 * 0.37799 * 13 11 10 15 15 C 1.30905 * 107.94038 * 359.76185 * 14 13 11 16 16 O 1.35628 * 125.98871 * 179.97438 * 15 14 13 17 17 C 1.46933 * 118.76241 * 306.44563 * 6 5 3 18 18 C 1.53195 * 108.77433 * 53.58215 * 17 6 5 19 19 C 1.53039 * 109.31481 * 305.36634 * 18 17 6 20 20 H 1.08997 * 109.45906 * 181.38572 * 19 18 17 21 21 N 1.46499 * 109.45889 * 301.34825 * 19 18 17 22 22 C 1.36938 * 119.99952 * 275.06385 * 21 19 18 23 23 H 1.08003 * 119.99757 * 0.02562 * 22 21 19 24 24 C 1.38809 * 120.00101 * 180.02562 * 22 21 19 25 25 N 1.31620 * 120.00130 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 119.99950 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46955 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47074 * 119.99879 * 26 24 22 29 29 H 1.48497 * 109.46915 * 239.99914 * 26 24 22 30 30 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 33 33 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 34 34 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 35 35 H 1.09005 * 109.58721 * 294.36791 * 5 3 2 36 36 H 1.08999 * 109.59086 * 54.79412 * 5 3 2 37 37 H 1.09001 * 109.46458 * 300.00172 * 9 7 6 38 38 H 1.08992 * 109.47028 * 60.00025 * 9 7 6 39 39 H 0.96697 * 114.00200 * 89.99684 * 12 11 10 40 40 H 0.96705 * 114.00550 * 270.02776 * 16 15 14 41 41 H 1.09003 * 109.58446 * 293.79935 * 17 6 5 42 42 H 1.08997 * 109.70485 * 173.44394 * 17 6 5 43 43 H 1.09000 * 109.49215 * 185.41308 * 18 17 6 44 44 H 1.08999 * 109.49744 * 65.32257 * 18 17 6 45 45 H 0.96997 * 120.00126 * 95.07153 * 21 19 18 46 46 H 0.96997 * 120.00126 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6057 1.9819 -0.8416 5 6 1.6365 2.1275 1.3095 6 7 2.2437 3.4648 1.3503 7 6 1.4842 4.5570 1.5659 8 8 0.2879 4.4412 1.7291 9 6 2.1212 5.9223 1.6045 10 7 1.0917 6.9346 1.8524 11 6 0.3743 7.5972 0.9004 12 8 0.4885 7.4337 -0.4410 13 7 -0.4461 8.4162 1.5085 14 7 -0.2449 8.2828 2.8887 15 6 0.6877 7.3833 3.0752 16 8 1.1683 6.9704 4.2743 17 6 3.6941 3.5892 1.1509 18 6 4.0739 2.8880 -0.1572 19 6 3.5654 1.4449 -0.1240 20 1 3.8558 0.9364 -1.0434 21 7 4.1496 0.7479 1.0244 22 6 5.3875 0.1720 0.9186 23 1 5.9333 0.2321 -0.0114 24 6 5.9409 -0.4889 2.0066 25 7 5.2755 -0.5626 3.1399 26 14 7.6299 -1.2738 1.8625 27 1 8.1636 -1.0522 0.4945 28 1 8.5468 -0.6616 2.8573 29 1 7.5217 -2.7321 2.1208 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 0.5511 2.2169 1.3557 36 1 1.9930 1.5389 2.1548 37 1 2.8622 5.9549 2.4032 38 1 2.6068 6.1237 0.6498 39 1 -0.0949 6.7541 -0.8055 40 1 1.9234 7.4835 4.5933 41 1 4.2189 3.1196 1.9829 42 1 3.9683 4.6426 1.0938 43 1 5.1582 2.8893 -0.2690 44 1 3.6205 3.4144 -0.9971 45 1 3.6595 0.6941 1.8598 46 1 5.6623 -1.0241 3.9003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037970449.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:29 Heat of formation + Delta-G solvation = -35.439240 kcal Electronic energy + Delta-G solvation = -31000.250499 eV Core-core repulsion = 26734.096703 eV Total energy + Delta-G solvation = -4266.153795 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.39920 -41.39921 -39.30906 -39.15893 -38.06435 -35.98522 -35.55818 -35.18446 -33.41474 -31.02437 -30.70000 -30.55946 -28.90989 -26.26359 -25.34536 -25.05712 -23.87628 -23.14128 -22.18873 -21.34533 -19.95847 -19.89156 -19.46367 -19.20328 -18.57441 -17.83087 -17.38940 -16.84172 -16.62777 -16.39282 -16.30472 -15.94367 -15.55859 -15.19885 -14.79477 -14.76172 -14.62754 -14.35440 -14.12279 -13.92368 -13.65876 -13.52029 -13.37795 -13.10112 -12.91754 -12.88343 -12.64933 -12.55653 -12.36301 -12.14645 -12.03677 -11.83912 -11.77228 -11.61733 -11.58501 -11.45720 -11.12280 -10.88127 -10.67693 -10.55114 -9.68433 -8.90089 -7.87646 -5.13192 0.38160 0.71734 1.11705 1.36405 1.49358 1.52342 1.59501 1.87106 2.20469 2.60858 2.79740 3.22290 3.43445 3.47207 3.79024 3.86295 3.96966 4.03235 4.08945 4.11894 4.23075 4.26263 4.36609 4.42448 4.45558 4.60834 4.65135 4.70270 4.83897 4.86920 4.99335 5.03486 5.15686 5.18727 5.23675 5.26331 5.33801 5.39561 5.51861 5.62721 5.65206 6.19702 6.30586 6.34537 6.42612 6.76913 6.93096 7.42586 8.19357 8.41516 9.35561 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014878 B = 0.003124 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.480415 B = 8959.672379 C = 9728.826012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.090 4.090 4 H 0.089 0.911 5 C 0.126 3.874 6 N -0.590 5.590 7 C 0.498 3.502 8 O -0.579 6.579 9 C 0.085 3.915 10 N -0.493 5.493 11 C 0.425 3.575 12 O -0.432 6.432 13 N -0.336 5.336 14 N -0.339 5.339 15 C 0.426 3.574 16 O -0.438 6.438 17 C 0.113 3.887 18 C -0.143 4.143 19 C 0.169 3.831 20 H 0.046 0.954 21 N -0.725 5.725 22 C -0.221 4.221 23 H 0.076 0.924 24 C -0.071 4.071 25 N -0.968 5.968 26 Si 0.959 3.041 27 H -0.266 1.266 28 H -0.299 1.299 29 H -0.305 1.305 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.047 0.953 37 H 0.157 0.843 38 H 0.165 0.835 39 H 0.432 0.568 40 H 0.437 0.563 41 H 0.057 0.943 42 H 0.116 0.884 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.373 0.627 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.059 13.393 -7.492 15.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.109 4.109 4 H 0.107 0.893 5 C 0.003 3.997 6 N -0.321 5.321 7 C 0.285 3.715 8 O -0.460 6.460 9 C -0.041 4.041 10 N -0.213 5.213 11 C 0.114 3.886 12 O -0.235 6.235 13 N -0.180 5.180 14 N -0.183 5.183 15 C 0.115 3.885 16 O -0.242 6.242 17 C -0.009 4.009 18 C -0.183 4.183 19 C 0.061 3.939 20 H 0.064 0.936 21 N -0.366 5.366 22 C -0.354 4.354 23 H 0.094 0.906 24 C -0.264 4.264 25 N -0.620 5.620 26 Si 0.790 3.210 27 H -0.191 1.191 28 H -0.226 1.226 29 H -0.233 1.233 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.066 0.934 37 H 0.174 0.826 38 H 0.183 0.817 39 H 0.294 0.706 40 H 0.300 0.700 41 H 0.076 0.924 42 H 0.134 0.866 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.206 0.794 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.611 14.367 -7.232 17.035 hybrid contribution 1.939 -2.291 0.538 3.049 sum -3.672 12.076 -6.695 14.288 Atomic orbital electron populations 1.21784 0.94964 1.01819 1.01781 1.21354 0.95875 0.95609 1.01704 1.21645 0.96009 0.96154 0.97126 0.89295 1.21512 0.98435 0.81956 0.97817 1.48107 1.09144 1.05912 1.68913 1.21062 0.86834 0.87055 0.76505 1.90748 1.16511 1.86891 1.51815 1.22093 0.89277 0.82848 1.09849 1.46668 1.34631 1.33806 1.06195 1.21306 0.91074 0.92087 0.84104 1.84865 1.66582 1.62717 1.09329 1.78224 1.19358 1.22936 0.97464 1.78233 1.16761 1.17622 1.05684 1.21323 0.93792 0.92503 0.80895 1.84997 1.54099 1.59300 1.25773 1.21853 0.77749 1.02388 0.98881 1.22402 1.01782 0.97299 0.96853 1.20484 0.90811 0.92001 0.90612 0.93607 1.42607 1.18171 1.64388 1.11458 1.19581 0.94196 1.24952 0.96633 0.90596 1.25324 1.01537 1.03284 0.96231 1.69795 1.39402 1.49879 1.02879 0.85282 0.81059 0.77251 0.77410 1.19077 1.22633 1.23268 0.91668 0.92447 0.93447 0.93919 0.91918 0.90016 0.93447 0.82577 0.81719 0.70585 0.70031 0.92428 0.86583 0.91102 0.89881 0.79374 0.94509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.67 71.98 0.70 -2.82 16 2 C -0.11 -3.10 5.19 30.60 0.16 -2.94 16 3 C -0.09 -2.43 2.14 -10.72 -0.02 -2.45 16 4 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 5 C 0.13 3.67 5.03 86.36 0.43 4.10 16 6 N -0.59 -14.22 2.97 -818.85 -2.43 -16.65 16 7 C 0.50 11.60 7.77 87.66 0.68 12.28 16 8 O -0.58 -18.60 15.84 -3.05 -0.05 -18.65 16 9 C 0.09 1.21 4.84 85.63 0.41 1.62 16 10 N -0.49 -9.92 2.25 -759.28 -1.71 -11.63 16 11 C 0.43 9.52 9.15 179.71 1.65 11.17 16 12 O -0.43 -6.64 13.58 -89.35 -1.21 -7.85 16 13 N -0.34 -9.77 12.72 -173.66 -2.21 -11.98 16 14 N -0.34 -10.02 12.72 -173.66 -2.21 -12.23 16 15 C 0.43 9.99 9.15 179.72 1.65 11.64 16 16 O -0.44 -7.77 13.58 -89.41 -1.21 -8.98 16 17 C 0.11 2.46 6.08 86.36 0.53 2.99 16 18 C -0.14 -3.40 5.78 30.67 0.18 -3.22 16 19 C 0.17 5.27 2.53 45.02 0.11 5.38 16 20 H 0.05 1.50 8.08 -2.39 -0.02 1.48 16 21 N -0.73 -30.37 3.72 -322.82 -1.20 -31.57 16 22 C -0.22 -10.71 9.93 84.03 0.83 -9.87 16 23 H 0.08 3.54 7.83 -2.91 -0.02 3.51 16 24 C -0.07 -3.74 5.50 84.86 0.47 -3.28 16 25 N -0.97 -55.01 13.06 21.65 0.28 -54.73 16 26 Si 0.96 43.04 29.55 68.60 2.03 45.07 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 28 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 29 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 1.19 6.70 -2.39 -0.02 1.18 16 33 H 0.04 1.53 7.70 -2.39 -0.02 1.51 16 34 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.08 2.49 5.73 -2.38 -0.01 2.47 16 36 H 0.05 1.68 6.64 -2.39 -0.02 1.67 16 37 H 0.16 1.34 7.94 -2.39 -0.02 1.32 16 38 H 0.17 1.24 7.69 -2.39 -0.02 1.22 16 39 H 0.43 3.32 9.06 -74.06 -0.67 2.65 16 40 H 0.44 2.02 9.06 -74.05 -0.67 1.35 16 41 H 0.06 1.70 7.74 -2.39 -0.02 1.69 16 42 H 0.12 1.40 5.95 -2.39 -0.01 1.39 16 43 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.37 17.42 5.94 -92.71 -0.55 16.87 16 46 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -77.28 377.28 -2.99 -80.27 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: -0.84 Total: 24.35 kcal Atomic # 6 Polarization: 16.82 SS G_CDS: 7.77 Total: 24.59 kcal Atomic # 7 Polarization: -129.32 SS G_CDS: -9.48 Total: -138.79 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -2.48 Total: -35.48 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -77.28 -2.99 -80.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037970449.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.826 kcal (2) G-P(sol) polarization free energy of solvation -77.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds