Wall clock time and date at job start Tue Mar 31 2020 22:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46963 * 2 1 4 4 H 1.09001 * 109.49995 * 55.06614 * 3 2 1 5 5 C 1.53197 * 109.49996 * 295.00005 * 3 2 1 6 6 N 1.46923 * 108.77755 * 185.41225 * 5 3 2 7 7 C 1.34769 * 120.63003 * 233.58280 * 6 5 3 8 8 O 1.21281 * 120.00662 * 0.02562 * 7 6 5 9 9 C 1.50706 * 120.00112 * 179.97438 * 7 6 5 10 10 N 1.46497 * 109.47458 * 180.02562 * 9 7 6 11 11 C 1.36371 * 125.96276 * 269.69378 * 10 9 7 12 12 O 1.35631 * 125.98763 * 0.23746 * 11 10 9 13 13 N 1.30913 * 108.02156 * 180.26664 * 11 10 9 14 14 N 1.40112 * 107.93762 * 359.97438 * 13 11 10 15 15 C 1.30900 * 107.94395 * 0.02562 * 14 13 11 16 16 O 1.35630 * 125.99171 * 180.02562 * 15 14 13 17 17 C 1.46928 * 118.73602 * 53.86244 * 6 5 3 18 18 C 1.53629 * 108.54425 * 306.09012 * 17 6 5 19 19 C 1.53037 * 109.49992 * 175.16233 * 3 2 1 20 20 H 1.08998 * 109.46117 * 301.33559 * 19 3 2 21 21 N 1.46501 * 109.46170 * 61.30663 * 19 3 2 22 22 C 1.36933 * 120.00161 * 204.99954 * 21 19 3 23 23 H 1.08001 * 120.00060 * 0.02562 * 22 21 19 24 24 C 1.38818 * 119.99805 * 179.97438 * 22 21 19 25 25 N 1.31624 * 119.99771 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 120.00030 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47094 * 89.99856 * 26 24 22 28 28 H 1.48495 * 109.47079 * 209.99436 * 26 24 22 29 29 H 1.48496 * 109.47248 * 329.99865 * 26 24 22 30 30 H 1.08997 * 109.47254 * 60.00008 * 1 2 3 31 31 H 1.09007 * 109.47058 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47367 * 299.99790 * 1 2 3 33 33 H 1.09001 * 109.47367 * 240.00209 * 2 1 3 34 34 H 1.08997 * 109.47254 * 119.99992 * 2 1 3 35 35 H 1.08996 * 109.58278 * 65.62248 * 5 3 2 36 36 H 1.09000 * 109.70014 * 305.27106 * 5 3 2 37 37 H 1.09007 * 109.46646 * 59.99846 * 9 7 6 38 38 H 1.09001 * 109.47343 * 300.00565 * 9 7 6 39 39 H 0.96696 * 113.99972 * 90.01015 * 12 11 10 40 40 H 0.96692 * 114.00205 * 269.97728 * 16 15 14 41 41 H 1.09002 * 109.58784 * 65.92540 * 17 6 5 42 42 H 1.09004 * 109.58614 * 186.35265 * 17 6 5 43 43 H 1.08996 * 109.63250 * 294.86842 * 18 17 6 44 44 H 1.08992 * 109.45744 * 174.74493 * 18 17 6 45 45 H 0.97005 * 119.99867 * 25.00698 * 21 19 3 46 46 H 0.96994 * 119.99898 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6065 1.9817 0.8424 5 6 1.6350 2.1281 -1.3088 6 7 2.2413 3.4657 -1.3493 7 6 1.4814 4.5579 -1.5638 8 8 0.2850 4.4422 -1.7251 9 6 2.1182 5.9233 -1.6020 10 7 1.0883 6.9358 -1.8473 11 6 0.6865 7.3898 -3.0688 12 8 1.1671 6.9799 -4.2691 13 7 -0.2440 8.2911 -2.8799 14 7 -0.4463 8.4197 -1.4995 15 6 0.3679 7.5929 -0.8938 16 8 0.4758 7.4193 0.4470 17 6 3.6928 3.5894 -1.1578 18 6 4.0740 2.8881 0.1548 19 6 3.5654 1.4450 0.1217 20 1 3.8573 0.9361 1.0402 21 7 4.1480 0.7488 -1.0282 22 6 5.3861 0.1731 -0.9248 23 1 5.9330 0.2319 0.0046 24 6 5.9377 -0.4870 -2.0143 25 7 7.1276 -1.0408 -1.9147 26 14 4.9914 -0.5893 -3.6216 27 1 5.3326 0.5792 -4.4721 28 1 5.3558 -1.8415 -4.3317 29 1 3.5336 -0.5868 -3.3387 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.5496 2.2173 -1.3538 36 1 1.9887 1.5406 -2.1561 37 1 2.8587 5.9565 -2.4012 38 1 2.6047 6.1242 -0.6475 39 1 0.6891 6.2299 -4.6488 40 1 1.1244 8.0000 0.8679 41 1 4.2129 3.1179 -1.9917 42 1 3.9657 4.6433 -1.1032 43 1 3.6218 3.4139 0.9957 44 1 5.1583 2.8893 0.2656 45 1 3.6566 0.6958 -1.8629 46 1 7.5133 -1.5017 -2.6760 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037970450.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:33 Heat of formation + Delta-G solvation = -0.559064 kcal Electronic energy + Delta-G solvation = -31128.330900 eV Core-core repulsion = 26863.689623 eV Total energy + Delta-G solvation = -4264.641277 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.57648 -40.43509 -38.46232 -38.26023 -37.36517 -34.92206 -34.55691 -33.97153 -31.94248 -30.05121 -29.83280 -29.63274 -28.04189 -25.18463 -24.12526 -23.30877 -23.04846 -22.33720 -21.07980 -20.43127 -19.19122 -18.96365 -18.44431 -18.11134 -17.62546 -17.01026 -16.52499 -15.87210 -15.72812 -15.59868 -14.92028 -14.67108 -14.30832 -14.06386 -13.92319 -13.64946 -13.53848 -13.34693 -13.18863 -12.85418 -12.69096 -12.64915 -12.59132 -12.12175 -11.80725 -11.65625 -11.45192 -11.28012 -11.13151 -11.00581 -10.84533 -10.81963 -10.55604 -10.48551 -10.34692 -10.01046 -9.82280 -9.69086 -9.67600 -9.10248 -8.68086 -7.43449 -5.91535 -3.27952 1.17489 1.45402 1.96420 2.22436 2.73824 2.96617 3.22119 3.24061 3.33427 3.46910 4.03675 4.07020 4.43661 4.50969 4.75567 4.90573 4.92303 4.94703 4.99825 5.11325 5.18500 5.37316 5.38728 5.39883 5.43665 5.48055 5.60060 5.67135 5.76088 5.83267 5.87991 6.01991 6.07273 6.17555 6.24710 6.30108 6.37101 6.49450 6.60693 6.68196 6.72561 6.99345 7.19768 7.62196 7.82056 7.83667 8.27270 9.04584 9.77051 9.96093 11.26676 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014468 B = 0.003392 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.782301 B = 8253.383680 C = 8874.487867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.106 4.106 4 H 0.073 0.927 5 C 0.117 3.883 6 N -0.595 5.595 7 C 0.498 3.502 8 O -0.536 6.536 9 C 0.082 3.918 10 N -0.496 5.496 11 C 0.417 3.583 12 O -0.438 6.438 13 N -0.295 5.295 14 N -0.297 5.297 15 C 0.417 3.583 16 O -0.433 6.433 17 C 0.107 3.893 18 C -0.150 4.150 19 C 0.184 3.816 20 H 0.062 0.938 21 N -0.743 5.743 22 C -0.245 4.245 23 H 0.091 0.909 24 C 0.009 3.991 25 N -0.931 5.931 26 Si 0.878 3.122 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.278 1.278 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.415 0.585 40 H 0.410 0.590 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.083 0.917 45 H 0.360 0.640 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.078 13.143 3.085 16.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.126 4.126 4 H 0.091 0.909 5 C -0.005 4.005 6 N -0.328 5.328 7 C 0.283 3.717 8 O -0.414 6.414 9 C -0.045 4.045 10 N -0.216 5.216 11 C 0.107 3.893 12 O -0.238 6.238 13 N -0.139 5.139 14 N -0.141 5.141 15 C 0.107 3.893 16 O -0.232 6.232 17 C -0.015 4.015 18 C -0.191 4.191 19 C 0.074 3.926 20 H 0.080 0.920 21 N -0.387 5.387 22 C -0.374 4.374 23 H 0.109 0.891 24 C -0.187 4.187 25 N -0.578 5.578 26 Si 0.708 3.292 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.205 1.205 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.274 0.726 40 H 0.268 0.732 41 H 0.105 0.895 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.101 0.899 45 H 0.194 0.806 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.588 14.073 2.803 17.833 hybrid contribution 0.848 -1.482 -0.934 1.946 sum -9.741 12.591 1.869 16.028 Atomic orbital electron populations 1.21860 0.96548 1.01307 1.01455 1.21437 0.94539 0.95524 1.03462 1.21806 0.97486 0.96366 0.96945 0.90875 1.21757 0.99172 0.81097 0.98430 1.48156 1.08833 1.06428 1.69378 1.20474 0.87343 0.85975 0.77899 1.90757 1.14387 1.86139 1.50091 1.21816 0.89906 0.85989 1.06797 1.46642 1.33755 1.34155 1.07036 1.21275 0.93274 0.94535 0.80237 1.84889 1.58047 1.54649 1.26255 1.78359 1.12500 1.17754 1.05311 1.78342 1.19618 1.18868 0.97302 1.21239 0.91876 0.92833 0.83308 1.85018 1.63788 1.63958 1.10444 1.21969 0.78495 1.00266 1.00764 1.22587 1.02596 0.98909 0.94965 1.20188 0.89318 0.90668 0.92412 0.91976 1.42843 1.19606 1.65902 1.10358 1.19039 0.91798 1.27307 0.99285 0.89114 1.24645 0.96416 1.00113 0.97552 1.69683 1.16270 1.40983 1.30869 0.86681 0.79535 0.77605 0.85377 1.21144 1.21636 1.20463 0.92959 0.92924 0.93067 0.91042 0.91363 0.89158 0.91247 0.85166 0.85539 0.72559 0.73185 0.89507 0.91064 0.92716 0.89867 0.80640 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.67 37.16 0.36 -1.47 16 2 C -0.11 -1.53 5.19 -26.73 -0.14 -1.67 16 3 C -0.11 -1.44 2.14 -90.50 -0.19 -1.63 16 4 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 5 C 0.12 1.61 5.02 -3.71 -0.02 1.59 16 6 N -0.60 -7.27 2.97 -172.50 -0.51 -7.78 16 7 C 0.50 6.04 7.77 -10.99 -0.09 5.96 16 8 O -0.54 -8.53 15.84 5.56 0.09 -8.45 16 9 C 0.08 0.70 4.84 -5.19 -0.03 0.67 16 10 N -0.50 -5.36 2.25 -121.34 -0.27 -5.64 16 11 C 0.42 5.00 9.15 -88.81 -0.81 4.19 16 12 O -0.44 -4.06 13.58 -18.59 -0.25 -4.32 16 13 N -0.30 -4.29 12.72 29.66 0.38 -3.92 16 14 N -0.30 -4.29 12.72 29.65 0.38 -3.91 16 15 C 0.42 4.89 9.15 -88.81 -0.81 4.08 16 16 O -0.43 -3.75 13.58 -18.59 -0.25 -4.01 16 17 C 0.11 1.23 6.11 -3.48 -0.02 1.21 16 18 C -0.15 -1.93 5.80 -26.38 -0.15 -2.08 16 19 C 0.18 2.87 2.53 -67.89 -0.17 2.70 16 20 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 21 N -0.74 -14.63 3.52 -53.39 -0.19 -14.81 16 22 C -0.24 -6.04 10.41 -15.06 -0.16 -6.20 16 23 H 0.09 2.44 8.06 -52.49 -0.42 2.01 16 24 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 25 N -0.93 -27.26 13.97 55.49 0.78 -26.48 16 26 Si 0.88 20.32 27.74 -169.99 -4.71 15.61 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.28 -6.03 6.52 56.52 0.37 -5.66 16 30 H 0.05 0.62 6.70 -51.93 -0.35 0.27 16 31 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 1.13 7.69 -51.93 -0.40 0.73 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.09 1.29 5.72 -51.93 -0.30 0.99 16 36 H 0.07 1.05 6.65 -51.93 -0.35 0.70 16 37 H 0.13 0.85 7.93 -51.93 -0.41 0.44 16 38 H 0.13 0.71 7.70 -51.93 -0.40 0.31 16 39 H 0.42 2.28 9.06 45.56 0.41 2.70 16 40 H 0.41 0.99 9.06 45.56 0.41 1.40 16 41 H 0.09 1.20 7.73 -51.93 -0.40 0.80 16 42 H 0.07 0.56 5.93 -51.93 -0.31 0.25 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.36 7.14 3.81 -40.82 -0.16 6.99 16 46 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 374.17 15.07 5.64 5.64 Total: -1.00 -35.42 374.17 -6.05 -41.47 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -4.79 Total: 9.11 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -2.33 Total: 7.48 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: 0.56 Total: -62.54 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.42 Total: -16.77 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.71 Total: 15.61 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.42 -6.05 -41.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037970450.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.912 kcal (2) G-P(sol) polarization free energy of solvation -35.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds