Wall clock time and date at job start Tue Mar 31 2020 22:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46963 * 2 1 4 4 H 1.09001 * 109.49995 * 55.06614 * 3 2 1 5 5 C 1.53197 * 109.49996 * 295.00005 * 3 2 1 6 6 N 1.46923 * 108.77755 * 185.41225 * 5 3 2 7 7 C 1.34769 * 120.63003 * 233.58280 * 6 5 3 8 8 O 1.21281 * 120.00662 * 0.02562 * 7 6 5 9 9 C 1.50706 * 120.00112 * 179.97438 * 7 6 5 10 10 N 1.46497 * 109.47458 * 180.02562 * 9 7 6 11 11 C 1.36371 * 125.96276 * 269.69378 * 10 9 7 12 12 O 1.35631 * 125.98763 * 0.23746 * 11 10 9 13 13 N 1.30913 * 108.02156 * 180.26664 * 11 10 9 14 14 N 1.40112 * 107.93762 * 359.97438 * 13 11 10 15 15 C 1.30900 * 107.94395 * 0.02562 * 14 13 11 16 16 O 1.35630 * 125.99171 * 180.02562 * 15 14 13 17 17 C 1.46928 * 118.73602 * 53.86244 * 6 5 3 18 18 C 1.53629 * 108.54425 * 306.09012 * 17 6 5 19 19 C 1.53037 * 109.49992 * 175.16233 * 3 2 1 20 20 H 1.08998 * 109.46117 * 301.33559 * 19 3 2 21 21 N 1.46501 * 109.46170 * 61.30663 * 19 3 2 22 22 C 1.36933 * 120.00161 * 204.99954 * 21 19 3 23 23 H 1.08001 * 120.00060 * 0.02562 * 22 21 19 24 24 C 1.38818 * 119.99805 * 179.97438 * 22 21 19 25 25 N 1.31624 * 119.99771 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 120.00030 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47094 * 89.99856 * 26 24 22 28 28 H 1.48495 * 109.47079 * 209.99436 * 26 24 22 29 29 H 1.48496 * 109.47248 * 329.99865 * 26 24 22 30 30 H 1.08997 * 109.47254 * 60.00008 * 1 2 3 31 31 H 1.09007 * 109.47058 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47367 * 299.99790 * 1 2 3 33 33 H 1.09001 * 109.47367 * 240.00209 * 2 1 3 34 34 H 1.08997 * 109.47254 * 119.99992 * 2 1 3 35 35 H 1.08996 * 109.58278 * 65.62248 * 5 3 2 36 36 H 1.09000 * 109.70014 * 305.27106 * 5 3 2 37 37 H 1.09007 * 109.46646 * 59.99846 * 9 7 6 38 38 H 1.09001 * 109.47343 * 300.00565 * 9 7 6 39 39 H 0.96696 * 113.99972 * 90.01015 * 12 11 10 40 40 H 0.96692 * 114.00205 * 269.97728 * 16 15 14 41 41 H 1.09002 * 109.58784 * 65.92540 * 17 6 5 42 42 H 1.09004 * 109.58614 * 186.35265 * 17 6 5 43 43 H 1.08996 * 109.63250 * 294.86842 * 18 17 6 44 44 H 1.08992 * 109.45744 * 174.74493 * 18 17 6 45 45 H 0.97005 * 119.99867 * 25.00698 * 21 19 3 46 46 H 0.96994 * 119.99898 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6065 1.9817 0.8424 5 6 1.6350 2.1281 -1.3088 6 7 2.2413 3.4657 -1.3493 7 6 1.4814 4.5579 -1.5638 8 8 0.2850 4.4422 -1.7251 9 6 2.1182 5.9233 -1.6020 10 7 1.0883 6.9358 -1.8473 11 6 0.6865 7.3898 -3.0688 12 8 1.1671 6.9799 -4.2691 13 7 -0.2440 8.2911 -2.8799 14 7 -0.4463 8.4197 -1.4995 15 6 0.3679 7.5929 -0.8938 16 8 0.4758 7.4193 0.4470 17 6 3.6928 3.5894 -1.1578 18 6 4.0740 2.8881 0.1548 19 6 3.5654 1.4450 0.1217 20 1 3.8573 0.9361 1.0402 21 7 4.1480 0.7488 -1.0282 22 6 5.3861 0.1731 -0.9248 23 1 5.9330 0.2319 0.0046 24 6 5.9377 -0.4870 -2.0143 25 7 7.1276 -1.0408 -1.9147 26 14 4.9914 -0.5893 -3.6216 27 1 5.3326 0.5792 -4.4721 28 1 5.3558 -1.8415 -4.3317 29 1 3.5336 -0.5868 -3.3387 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.5496 2.2173 -1.3538 36 1 1.9887 1.5406 -2.1561 37 1 2.8587 5.9565 -2.4012 38 1 2.6047 6.1242 -0.6475 39 1 0.6891 6.2299 -4.6488 40 1 1.1244 8.0000 0.8679 41 1 4.2129 3.1179 -1.9917 42 1 3.9657 4.6433 -1.1032 43 1 3.6218 3.4139 0.9957 44 1 5.1583 2.8893 0.2656 45 1 3.6566 0.6958 -1.8629 46 1 7.5133 -1.5017 -2.6760 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037970450.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:32 Heat of formation + Delta-G solvation = -32.563703 kcal Electronic energy + Delta-G solvation = -31129.718726 eV Core-core repulsion = 26863.689623 eV Total energy + Delta-G solvation = -4266.029103 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.40780 -41.46044 -39.40165 -39.16474 -38.07207 -36.07085 -35.60613 -35.21663 -33.57783 -31.47202 -30.70861 -30.67724 -28.99937 -26.33231 -25.19321 -24.98129 -23.88488 -23.15085 -22.20556 -21.39195 -20.06237 -19.92693 -19.78283 -19.38362 -18.61557 -17.86236 -17.39346 -16.83723 -16.75165 -16.42408 -16.37257 -15.99272 -15.59898 -15.09148 -14.98807 -14.88642 -14.58060 -14.40289 -14.25297 -13.94102 -13.85152 -13.54896 -13.39030 -13.29796 -13.00800 -12.95869 -12.69604 -12.56633 -12.48386 -12.19115 -12.02482 -11.87595 -11.79046 -11.64281 -11.61952 -11.54775 -11.19406 -10.92628 -10.71089 -10.55937 -9.75389 -9.23115 -7.97324 -5.28230 0.37232 0.71114 1.10742 1.33389 1.36417 1.38519 1.46348 1.82604 2.19600 2.49831 2.78995 3.19469 3.35305 3.42163 3.61557 3.72591 3.91185 3.95619 3.99589 4.10776 4.21324 4.23749 4.26639 4.33944 4.40400 4.56123 4.62779 4.64633 4.77292 4.82763 4.93291 4.98443 5.11620 5.15321 5.18948 5.23658 5.28836 5.34959 5.45536 5.59461 5.85838 6.17295 6.24393 6.27563 6.42328 6.76455 6.89622 7.13828 7.90622 8.08069 9.24556 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014468 B = 0.003392 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.782301 B = 8253.383680 C = 8874.487867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C -0.094 4.094 4 H 0.090 0.910 5 C 0.120 3.880 6 N -0.593 5.593 7 C 0.500 3.500 8 O -0.576 6.576 9 C 0.083 3.917 10 N -0.493 5.493 11 C 0.422 3.578 12 O -0.435 6.435 13 N -0.336 5.336 14 N -0.340 5.340 15 C 0.429 3.571 16 O -0.434 6.434 17 C 0.109 3.891 18 C -0.143 4.143 19 C 0.175 3.825 20 H 0.047 0.953 21 N -0.742 5.742 22 C -0.210 4.210 23 H 0.062 0.938 24 C -0.059 4.059 25 N -0.985 5.985 26 Si 0.938 3.062 27 H -0.277 1.277 28 H -0.306 1.306 29 H -0.258 1.258 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.158 0.842 38 H 0.166 0.834 39 H 0.431 0.569 40 H 0.437 0.563 41 H 0.064 0.936 42 H 0.119 0.881 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.362 0.638 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.923 14.892 3.574 18.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.114 4.114 4 H 0.108 0.892 5 C -0.002 4.002 6 N -0.325 5.325 7 C 0.288 3.712 8 O -0.456 6.456 9 C -0.043 4.043 10 N -0.213 5.213 11 C 0.111 3.889 12 O -0.238 6.238 13 N -0.180 5.180 14 N -0.184 5.184 15 C 0.118 3.882 16 O -0.238 6.238 17 C -0.012 4.012 18 C -0.183 4.183 19 C 0.067 3.933 20 H 0.065 0.935 21 N -0.386 5.386 22 C -0.341 4.341 23 H 0.080 0.920 24 C -0.250 4.250 25 N -0.636 5.636 26 Si 0.767 3.233 27 H -0.204 1.204 28 H -0.233 1.233 29 H -0.183 1.183 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.175 0.825 38 H 0.183 0.817 39 H 0.293 0.707 40 H 0.300 0.700 41 H 0.082 0.918 42 H 0.137 0.863 43 H 0.103 0.897 44 H 0.087 0.913 45 H 0.196 0.804 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.464 15.870 3.330 19.859 hybrid contribution 1.107 -2.049 -0.926 2.506 sum -10.357 13.821 2.404 17.438 Atomic orbital electron populations 1.21794 0.94835 1.01956 1.01901 1.21409 0.96046 0.95468 1.02026 1.21692 0.95595 0.96429 0.97652 0.89200 1.21585 0.99007 0.82014 0.97626 1.48137 1.09077 1.05942 1.69299 1.21044 0.86762 0.86976 0.76458 1.90755 1.16315 1.86809 1.51747 1.22122 0.89253 0.82910 1.09966 1.46666 1.34033 1.34274 1.06340 1.21334 0.92417 0.93908 0.81236 1.84870 1.58072 1.55540 1.25335 1.78242 1.14323 1.19634 1.05790 1.78231 1.21515 1.21075 0.97561 1.21289 0.90877 0.91699 0.84316 1.84989 1.65123 1.64853 1.08820 1.22013 0.77655 1.02793 0.98775 1.22446 1.01801 0.96912 0.97189 1.20440 0.90768 0.91993 0.90090 0.93467 1.42800 1.17970 1.66021 1.11796 1.18988 0.92742 1.24911 0.97502 0.91972 1.25293 0.97423 1.01272 1.01057 1.69855 1.18573 1.43552 1.31645 0.85679 0.79373 0.76870 0.81403 1.20360 1.23322 1.18250 0.93059 0.92273 0.91981 0.93434 0.91825 0.89531 0.92817 0.82479 0.81660 0.70672 0.69968 0.91771 0.86288 0.89719 0.91261 0.80427 0.93696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.67 71.98 0.70 -2.52 16 2 C -0.11 -2.92 5.19 30.59 0.16 -2.76 16 3 C -0.09 -2.34 2.14 -10.72 -0.02 -2.36 16 4 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 5 C 0.12 3.03 5.02 86.36 0.43 3.47 16 6 N -0.59 -12.37 2.97 -818.05 -2.43 -14.80 16 7 C 0.50 10.24 7.77 87.66 0.68 10.92 16 8 O -0.58 -16.86 15.84 -3.03 -0.05 -16.90 16 9 C 0.08 1.00 4.84 85.64 0.41 1.42 16 10 N -0.49 -9.07 2.25 -759.25 -1.71 -10.77 16 11 C 0.42 9.26 9.15 179.71 1.65 10.90 16 12 O -0.44 -7.03 13.58 -89.44 -1.21 -8.25 16 13 N -0.34 -9.51 12.72 -173.65 -2.21 -11.72 16 14 N -0.34 -9.46 12.72 -173.66 -2.21 -11.67 16 15 C 0.43 8.97 9.15 179.72 1.65 10.62 16 16 O -0.43 -6.02 13.58 -89.43 -1.21 -7.24 16 17 C 0.11 2.07 6.11 86.51 0.53 2.60 16 18 C -0.14 -3.23 5.80 30.82 0.18 -3.06 16 19 C 0.18 5.18 2.53 45.02 0.11 5.29 16 20 H 0.05 1.54 8.08 -2.39 -0.02 1.53 16 21 N -0.74 -28.57 3.52 -322.81 -1.13 -29.71 16 22 C -0.21 -10.48 10.41 84.04 0.87 -9.60 16 23 H 0.06 3.43 8.06 -2.91 -0.02 3.40 16 24 C -0.06 -3.20 5.50 84.86 0.47 -2.73 16 25 N -0.98 -59.46 13.97 21.65 0.30 -59.15 16 26 Si 0.94 42.25 27.74 68.60 1.90 44.15 16 27 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 28 H -0.31 -14.52 7.11 99.48 0.71 -13.81 16 29 H -0.26 -10.51 6.52 99.48 0.65 -9.86 16 30 H 0.05 1.13 6.70 -2.39 -0.02 1.11 16 31 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.05 1.47 7.69 -2.39 -0.02 1.45 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 35 H 0.09 2.30 5.72 -2.39 -0.01 2.28 16 36 H 0.05 1.53 6.65 -2.39 -0.02 1.51 16 37 H 0.16 1.14 7.93 -2.38 -0.02 1.13 16 38 H 0.17 0.75 7.70 -2.39 -0.02 0.73 16 39 H 0.43 3.78 9.06 -74.06 -0.67 3.11 16 40 H 0.44 0.34 9.06 -74.06 -0.67 -0.33 16 41 H 0.06 1.57 7.73 -2.39 -0.02 1.55 16 42 H 0.12 1.14 5.93 -2.38 -0.01 1.13 16 43 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.36 13.89 3.81 -92.70 -0.35 13.54 16 46 H 0.25 14.86 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -80.57 374.17 -2.84 -83.41 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -0.70 Total: 20.47 kcal Atomic # 6 Polarization: 14.37 SS G_CDS: 7.81 Total: 22.18 kcal Atomic # 7 Polarization: -128.44 SS G_CDS: -9.38 Total: -137.82 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -2.48 Total: -32.39 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.90 Total: 44.15 kcal Total: -80.57 -2.84 -83.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037970450.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.844 kcal (2) G-P(sol) polarization free energy of solvation -80.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds