Wall clock time and date at job start Tue Mar 31 2020 22:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39723 * 119.59443 * 123.65393 * 3 2 1 5 5 C 1.37968 * 119.20770 * 179.69616 * 4 3 2 6 6 C 1.40243 * 118.39626 * 0.52142 * 5 4 3 7 7 C 1.47674 * 120.44111 * 179.78188 * 6 5 4 8 8 O 1.21576 * 119.99521 * 340.38790 * 7 6 5 9 9 N 1.34772 * 120.00391 * 160.39725 * 7 6 5 10 10 C 1.48158 * 127.02662 * 183.88573 * 9 7 6 11 11 C 1.55053 * 103.31533 * 140.99753 * 10 9 7 12 12 C 1.54154 * 102.73370 * 36.98800 * 11 10 9 13 13 C 1.47614 * 127.02224 * 3.90288 * 9 7 6 14 14 C 1.52496 * 110.05621 * 97.47491 * 12 11 10 15 15 C 1.53127 * 109.60438 * 181.74020 * 14 12 11 16 16 C 1.53191 * 109.29028 * 299.48747 * 15 14 12 17 17 N 1.47200 * 108.97112 * 55.08336 * 16 15 14 18 18 C 1.36934 * 120.85738 * 125.93060 * 17 16 15 19 19 H 1.07997 * 119.99876 * 211.11870 * 18 17 16 20 20 C 1.38809 * 120.00091 * 31.12330 * 18 17 16 21 21 N 1.31617 * 119.99994 * 10.35376 * 20 18 17 22 22 Si 1.86799 * 120.00124 * 190.35828 * 20 18 17 23 23 H 1.48501 * 109.47214 * 59.99759 * 22 20 18 24 24 H 1.48501 * 109.47151 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46807 * 299.99507 * 22 20 18 26 26 C 1.47033 * 118.46109 * 306.06790 * 17 16 15 27 27 C 1.39650 * 119.11725 * 359.49767 * 6 5 4 28 28 N 1.31484 * 120.71708 * 0.23499 * 27 6 5 29 29 H 4.51259 * 14.17420 * 0.02562 * 4 2 1 30 30 H 1.08010 * 120.39496 * 359.97438 * 4 3 2 31 31 H 1.07997 * 120.80452 * 180.26974 * 5 4 3 32 32 H 1.09005 * 110.64942 * 259.44788 * 10 9 7 33 33 H 1.08994 * 110.65437 * 22.37443 * 10 9 7 34 34 H 1.09000 * 110.75441 * 278.67745 * 11 10 9 35 35 H 1.08996 * 110.75806 * 155.30447 * 11 10 9 36 36 H 1.09001 * 109.96965 * 85.99070 * 13 9 7 37 37 H 1.08993 * 109.97363 * 324.71156 * 13 9 7 38 38 H 1.08997 * 109.44538 * 301.78134 * 14 12 11 39 39 H 1.09002 * 109.44899 * 61.72618 * 14 12 11 40 40 H 1.09003 * 109.50098 * 59.43152 * 15 14 12 41 41 H 1.08997 * 109.50312 * 179.50345 * 15 14 12 42 42 H 1.08994 * 109.56675 * 174.89181 * 16 15 14 43 43 H 1.09002 * 109.56189 * 295.12432 * 16 15 14 44 44 H 0.96999 * 120.00555 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.58384 * 292.85681 * 26 17 16 46 46 H 1.09007 * 109.58113 * 172.57666 * 26 17 16 47 47 H 1.08008 * 119.64462 * 180.25619 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2957 0.6742 -1.0113 5 6 4.6753 0.6750 -1.0000 6 6 5.3343 -0.0149 0.0278 7 6 6.8097 -0.0476 0.0809 8 8 7.4594 0.1988 -0.9168 9 7 7.4360 -0.3507 1.2351 10 6 8.8965 -0.3506 1.4843 11 6 9.0142 0.2302 2.9172 12 6 7.7864 -0.3711 3.6294 13 6 6.8071 -0.7510 2.5091 14 6 8.1948 -1.6099 4.4195 15 6 6.9608 -2.2234 5.0871 16 6 6.3423 -1.2002 6.0448 17 7 6.0616 0.0403 5.3037 18 6 4.8097 0.5949 5.3112 19 1 4.4582 1.1461 4.4516 20 6 3.9925 0.4488 6.4236 21 7 4.4846 -0.0405 7.5420 22 14 2.1943 0.9465 6.3335 23 1 1.5127 0.1513 5.2807 24 1 1.5440 0.6923 7.6441 25 1 2.0965 2.3912 6.0038 26 6 7.1568 0.6700 4.5514 27 6 4.5766 -0.6657 1.0039 28 7 3.2627 -0.6393 0.9625 29 1 -1.0500 0.0001 0.0007 30 1 2.7552 1.1920 -1.7901 31 1 5.2344 1.1910 -1.7665 32 1 9.2929 -1.3654 1.4472 33 1 9.4093 0.2876 0.7648 34 1 8.9557 1.3184 2.8988 35 1 9.9373 -0.1002 3.3933 36 1 6.6326 -1.8269 2.5162 37 1 5.8648 -0.2196 2.6422 38 1 8.6427 -2.3393 3.7446 39 1 8.9193 -1.3301 5.1842 40 1 6.2313 -2.4949 4.3240 41 1 7.2531 -3.1136 5.6440 42 1 5.4136 -1.5980 6.4539 43 1 7.0393 -0.9923 6.8566 44 1 3.9135 -0.1430 8.3193 45 1 7.9085 1.0454 5.2457 46 1 6.7643 1.4949 3.9566 47 1 5.0753 -1.1961 1.8017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040496544.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:47 Heat of formation + Delta-G solvation = 101.000706 kcal Electronic energy + Delta-G solvation = -30271.152307 eV Core-core repulsion = 26421.764255 eV Total energy + Delta-G solvation = -3849.388052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.94834 -39.71320 -38.31702 -35.81830 -34.10487 -33.12440 -32.59641 -31.72719 -30.66996 -30.37561 -28.86965 -26.32463 -25.34248 -24.90722 -23.64779 -22.94559 -22.16457 -20.60961 -19.86828 -19.51710 -18.38962 -17.61474 -16.67800 -16.43704 -16.13733 -15.87749 -15.46854 -14.86338 -14.48080 -14.37300 -14.14101 -13.89105 -13.79306 -13.48869 -13.29572 -13.21131 -12.88079 -12.69206 -12.36878 -12.15600 -11.90839 -11.76339 -11.39406 -11.18128 -11.10093 -10.97397 -10.87692 -10.66470 -10.56729 -10.36954 -10.23374 -10.07128 -10.02680 -9.84118 -9.55565 -9.48493 -9.41972 -8.94405 -8.62908 -8.47585 -6.64962 -5.79685 -3.28271 0.28108 1.13341 2.44245 2.50965 2.90424 3.15185 3.39335 3.43801 3.48119 3.79750 3.94418 4.37453 4.47345 4.54112 4.72186 4.77040 4.84990 4.94078 4.99694 5.06356 5.30979 5.37176 5.40452 5.44556 5.56371 5.61038 5.62390 5.73706 5.83977 5.86620 5.88996 5.90067 5.92746 6.04250 6.13595 6.23804 6.37583 6.39078 6.42932 6.54525 6.63114 6.73446 6.80832 6.86053 7.30382 7.36972 7.52587 7.68868 7.77103 7.77606 8.09859 8.44906 9.20164 9.80926 10.38643 11.27856 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007557 B = 0.005965 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3704.056114 B = 4693.022745 C = 7771.707129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.148 4.148 3 C 0.246 3.754 4 C -0.158 4.158 5 C -0.017 4.017 6 C -0.182 4.182 7 C 0.583 3.417 8 O -0.546 6.546 9 N -0.612 5.612 10 C 0.108 3.892 11 C -0.126 4.126 12 C -0.083 4.083 13 C 0.097 3.903 14 C -0.095 4.095 15 C -0.147 4.147 16 C 0.169 3.831 17 N -0.589 5.589 18 C -0.252 4.252 19 H 0.061 0.939 20 C 0.010 3.990 21 N -0.903 5.903 22 Si 0.898 3.102 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.159 3.841 27 C 0.131 3.869 28 N -0.462 5.462 29 H 0.230 0.770 30 H 0.145 0.855 31 H 0.150 0.850 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.047 0.953 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.090 0.910 43 H 0.017 0.983 44 H 0.254 0.746 45 H 0.023 0.977 46 H 0.052 0.948 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.610 -1.881 -13.388 13.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.149 4.149 3 C 0.110 3.890 4 C -0.178 4.178 5 C -0.043 4.043 6 C -0.187 4.187 7 C 0.372 3.628 8 O -0.425 6.425 9 N -0.344 5.344 10 C -0.014 4.014 11 C -0.164 4.164 12 C -0.086 4.086 13 C -0.024 4.024 14 C -0.132 4.132 15 C -0.186 4.186 16 C 0.044 3.956 17 N -0.312 5.312 18 C -0.381 4.381 19 H 0.079 0.921 20 C -0.189 4.189 21 N -0.547 5.547 22 Si 0.727 3.273 23 H -0.206 1.206 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.032 3.968 27 C -0.028 4.028 28 N -0.169 5.169 29 H 0.247 0.753 30 H 0.162 0.838 31 H 0.168 0.832 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.118 0.882 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.108 0.892 43 H 0.035 0.965 44 H 0.064 0.936 45 H 0.041 0.959 46 H 0.071 0.929 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 2.353 -2.178 -13.163 13.548 hybrid contribution -0.680 0.671 -0.422 1.044 sum 1.674 -1.507 -13.585 13.770 Atomic orbital electron populations 1.24932 0.95621 0.97113 0.97771 1.19312 0.91097 1.02433 1.02065 1.16852 0.88306 0.92987 0.90821 1.21960 0.94328 1.01479 1.00067 1.21564 0.93559 0.93564 0.95599 1.21025 0.94465 1.04173 0.98997 1.17534 0.86458 0.76836 0.81926 1.90761 1.67114 1.50877 1.33730 1.48809 1.08508 1.66513 1.10615 1.22493 0.80561 1.01213 0.97105 1.22776 0.98570 1.01008 0.94070 1.21640 0.93815 0.98159 0.94965 1.22814 0.98360 0.99973 0.81299 1.21407 0.98247 0.95282 0.98302 1.22275 0.96733 0.99264 1.00356 1.20850 0.99725 0.84504 0.90536 1.44084 1.05822 1.24018 1.57254 1.19026 0.90111 1.31196 0.97797 0.92114 1.25087 0.98804 1.00232 0.94772 1.69948 1.34629 1.49022 1.01136 0.86438 0.85334 0.78638 0.76854 1.20565 1.21599 1.20996 1.20884 0.90979 0.92233 0.92666 1.24163 0.88807 0.94188 0.95660 1.67930 1.09749 1.16990 1.22266 0.75296 0.83750 0.83206 0.91015 0.90049 0.90681 0.89965 0.90847 0.88191 0.93402 0.92081 0.92727 0.93078 0.89218 0.96457 0.93555 0.95935 0.92928 0.79557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 19.25 29.55 0.57 -0.90 16 2 C -0.15 -2.07 13.43 -38.84 -0.52 -2.59 16 3 C 0.25 3.72 6.59 -84.91 -0.56 3.16 16 4 C -0.16 -1.95 9.77 -39.13 -0.38 -2.33 16 5 C -0.02 -0.22 9.70 -38.93 -0.38 -0.59 16 6 C -0.18 -2.72 5.84 -104.76 -0.61 -3.33 16 7 C 0.58 9.21 7.76 -12.41 -0.10 9.12 16 8 O -0.55 -9.68 16.81 5.30 0.09 -9.60 16 9 N -0.61 -8.90 3.30 -171.00 -0.56 -9.46 16 10 C 0.11 1.34 7.08 -2.04 -0.01 1.33 16 11 C -0.13 -1.54 6.15 -25.04 -0.15 -1.70 16 12 C -0.08 -1.25 0.62 -154.04 -0.09 -1.34 16 13 C 0.10 1.47 3.70 -3.14 -0.01 1.46 16 14 C -0.09 -1.38 4.40 -26.92 -0.12 -1.50 16 15 C -0.15 -2.52 5.87 -26.57 -0.16 -2.68 16 16 C 0.17 3.75 5.27 -3.56 -0.02 3.73 16 17 N -0.59 -13.58 2.77 -172.34 -0.48 -14.06 16 18 C -0.25 -6.58 9.60 -15.06 -0.14 -6.72 16 19 H 0.06 1.60 7.85 -52.49 -0.41 1.19 16 20 C 0.01 0.27 5.07 -17.43 -0.09 0.18 16 21 N -0.90 -25.42 11.02 55.49 0.61 -24.81 16 22 Si 0.90 21.71 29.57 -169.99 -5.03 16.69 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 26 C 0.16 3.05 4.81 -3.93 -0.02 3.03 16 27 C 0.13 2.09 9.33 -17.17 -0.16 1.93 16 28 N -0.46 -7.99 10.27 -10.78 -0.11 -8.11 16 29 H 0.23 1.42 7.80 -54.09 -0.42 1.00 16 30 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 31 H 0.15 1.68 7.85 -52.49 -0.41 1.27 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.01 7.89 -51.93 -0.41 0.60 16 34 H 0.07 0.95 7.84 -51.93 -0.41 0.54 16 35 H 0.08 0.87 7.83 -51.93 -0.41 0.46 16 36 H 0.07 1.07 6.04 -51.93 -0.31 0.75 16 37 H 0.10 1.75 5.07 -51.93 -0.26 1.48 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.05 0.94 6.65 -51.93 -0.35 0.60 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.09 2.28 6.06 -51.93 -0.31 1.97 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.05 1.04 7.93 -51.93 -0.41 0.62 16 47 H 0.19 2.95 3.95 -52.48 -0.21 2.74 16 LS Contribution 377.28 15.07 5.69 5.69 Total: -1.00 -31.57 377.28 -9.17 -40.75 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.42 Total: 2.67 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -2.96 Total: 0.23 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.54 Total: -56.43 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.57 -9.17 -40.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040496544.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.746 kcal (2) G-P(sol) polarization free energy of solvation -31.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds