Wall clock time and date at job start Tue Mar 31 2020 22:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39987 * 120.46225 * 93.00618 * 3 2 1 5 5 C 1.38218 * 118.36770 * 179.72214 * 4 3 2 6 6 C 1.39488 * 119.20907 * 0.49574 * 5 4 3 7 7 C 1.47991 * 119.57093 * 179.76741 * 6 5 4 8 8 O 1.21535 * 119.99754 * 4.58714 * 7 6 5 9 9 N 1.34779 * 119.99907 * 184.57745 * 7 6 5 10 10 C 1.48164 * 127.02465 * 174.36739 * 9 7 6 11 11 C 1.55044 * 103.31454 * 141.01672 * 10 9 7 12 12 C 1.54155 * 102.73245 * 36.99279 * 11 10 9 13 13 C 1.47605 * 127.02632 * 354.41390 * 9 7 6 14 14 C 1.52500 * 110.05597 * 219.39029 * 12 11 10 15 15 C 1.53130 * 109.58489 * 178.26819 * 14 12 11 16 16 C 1.53130 * 109.31784 * 60.51938 * 15 14 12 17 17 N 1.46932 * 108.87909 * 304.91849 * 16 15 14 18 18 C 1.36942 * 120.67645 * 234.04190 * 17 16 15 19 19 H 1.07995 * 120.00143 * 35.21756 * 18 17 16 20 20 C 1.38813 * 119.99443 * 215.21670 * 18 17 16 21 21 N 1.31614 * 120.00490 * 355.61359 * 20 18 17 22 22 Si 1.86806 * 119.99491 * 175.61110 * 20 18 17 23 23 H 1.48497 * 109.47292 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46946 * 120.00026 * 22 20 18 25 25 H 1.48500 * 109.47332 * 239.99805 * 22 20 18 26 26 C 1.47027 * 118.63647 * 54.02423 * 17 16 15 27 27 N 1.32828 * 120.85760 * 359.48976 * 6 5 4 28 28 C 1.31296 * 121.78752 * 0.25495 * 27 6 5 29 29 H 4.52932 * 13.94659 * 0.02562 * 4 2 1 30 30 H 1.08004 * 120.81429 * 0.02562 * 4 3 2 31 31 H 1.08005 * 120.39755 * 180.24039 * 5 4 3 32 32 H 1.08997 * 110.64745 * 259.47731 * 10 9 7 33 33 H 1.09000 * 110.64720 * 22.39741 * 10 9 7 34 34 H 1.09002 * 110.75874 * 278.68016 * 11 10 9 35 35 H 1.08993 * 110.75845 * 155.30302 * 11 10 9 36 36 H 1.09000 * 109.97356 * 85.96319 * 13 9 7 37 37 H 1.09005 * 110.00897 * 324.70420 * 13 9 7 38 38 H 1.08995 * 109.44637 * 298.29765 * 14 12 11 39 39 H 1.09007 * 109.44853 * 58.24421 * 14 12 11 40 40 H 1.09000 * 109.50224 * 180.43663 * 15 14 12 41 41 H 1.09001 * 109.49899 * 300.54872 * 15 14 12 42 42 H 1.09007 * 109.56923 * 185.09784 * 16 15 14 43 43 H 1.09003 * 109.66712 * 64.79917 * 16 15 14 44 44 H 0.97001 * 119.99951 * 180.02562 * 21 20 18 45 45 H 1.09007 * 109.58147 * 187.41255 * 26 17 16 46 46 H 1.08999 * 109.70069 * 67.06785 * 26 17 16 47 47 H 1.08000 * 119.64826 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3157 0.0642 -1.2050 5 6 4.6969 0.0681 -1.1542 6 6 5.3327 -0.0015 0.0854 7 6 6.8113 -0.0032 0.1487 8 8 7.4632 0.1398 -0.8670 9 7 7.4349 -0.1630 1.3328 10 6 8.8918 -0.3047 1.5620 11 6 9.1309 0.5136 2.8570 12 6 7.8633 0.2195 3.6836 13 6 6.8058 -0.2335 2.6663 14 6 7.4017 1.4836 4.4009 15 6 6.1186 1.1902 5.1835 16 6 6.3967 0.0993 6.2215 17 7 6.9573 -1.0748 5.5388 18 6 6.3870 -2.3104 5.6918 19 1 5.3156 -2.4021 5.7911 20 6 7.1863 -3.4450 5.7194 21 7 8.4820 -3.3424 5.5123 22 14 6.4228 -5.1174 6.0505 23 1 4.9593 -4.9629 6.2488 24 1 6.6731 -6.0137 4.8931 25 1 7.0290 -5.7053 7.2720 26 6 8.1427 -0.8957 4.6877 27 7 4.6284 -0.0609 1.2099 28 6 3.3154 -0.0617 1.2045 29 1 -1.0499 0.0005 0.0001 30 1 2.7966 0.1141 -2.1508 31 1 5.2771 0.1202 -2.0637 32 1 9.1570 -1.3510 1.7138 33 1 9.4546 0.1163 0.7289 34 1 9.2078 1.5776 2.6330 35 1 10.0216 0.1618 3.3773 36 1 6.4988 -1.2575 2.8794 37 1 5.9420 0.4300 2.7068 38 1 8.1792 1.8146 5.0894 39 1 7.2086 2.2669 3.6678 40 1 5.7857 2.0965 5.6894 41 1 5.3433 0.8503 4.4969 42 1 5.4668 -0.1769 6.7189 43 1 7.1097 0.4679 6.9591 44 1 9.0404 -4.1354 5.5311 45 1 8.3533 -1.8229 4.1547 46 1 9.0002 -0.6259 5.3042 47 1 2.7773 -0.1114 2.1395 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040497018.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:17 Heat of formation + Delta-G solvation = 74.307869 kcal Electronic energy + Delta-G solvation = -30134.391680 eV Core-core repulsion = 26283.846140 eV Total energy + Delta-G solvation = -3850.545540 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.93038 -40.83499 -39.53300 -37.21592 -35.42229 -34.81975 -33.41734 -32.96281 -31.90969 -31.52606 -30.08345 -27.39702 -27.09679 -26.02337 -24.71666 -24.21723 -23.70447 -21.96992 -21.02462 -20.12492 -19.68478 -18.75695 -18.47395 -17.77673 -17.08713 -16.79294 -16.56196 -16.47889 -15.84037 -15.67563 -15.48573 -15.32304 -14.90390 -14.73767 -14.52020 -14.24984 -14.16925 -13.97344 -13.84056 -13.56887 -13.14454 -12.92356 -12.88016 -12.64729 -12.61963 -12.53500 -12.37567 -12.04153 -11.94329 -11.78413 -11.76892 -11.43936 -11.33921 -11.01542 -10.93663 -10.90816 -10.51350 -10.33383 -9.95839 -9.63220 -8.46415 -7.81119 -5.34655 -0.77361 0.12495 1.34977 1.44402 1.47072 1.55519 1.70439 1.86300 2.18311 2.51472 2.89398 2.93167 3.25194 3.33406 3.50590 3.66819 3.73680 3.82913 3.92636 3.95523 3.99849 4.11940 4.33863 4.36988 4.40421 4.53805 4.61315 4.66441 4.71202 4.78302 4.84192 4.89984 4.98209 5.04795 5.07420 5.08280 5.09738 5.21378 5.26221 5.29991 5.38644 5.42026 5.49179 5.62432 5.68722 5.74009 5.92084 6.43348 6.48929 6.52701 6.60343 6.98581 7.24650 7.93560 8.47277 9.21937 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009282 B = 0.004250 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3016.017236 B = 6586.703893 C = 7693.263265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.210 4.210 3 C -0.011 4.011 4 C -0.055 4.055 5 C -0.106 4.106 6 C 0.062 3.938 7 C 0.578 3.422 8 O -0.571 6.571 9 N -0.601 5.601 10 C 0.103 3.897 11 C -0.113 4.113 12 C -0.096 4.096 13 C 0.145 3.855 14 C -0.088 4.088 15 C -0.127 4.127 16 C 0.142 3.858 17 N -0.608 5.608 18 C -0.251 4.251 19 H 0.061 0.939 20 C -0.040 4.040 21 N -0.930 5.930 22 Si 0.954 3.046 23 H -0.267 1.267 24 H -0.297 1.297 25 H -0.291 1.291 26 C 0.198 3.802 27 N -0.462 5.462 28 C 0.112 3.888 29 H 0.266 0.734 30 H 0.178 0.822 31 H 0.161 0.839 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.038 0.962 37 H 0.101 0.899 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.014 0.986 44 H 0.247 0.753 45 H 0.065 0.935 46 H -0.006 1.006 47 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.044 11.005 -10.997 19.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.211 4.211 3 C -0.014 4.014 4 C -0.080 4.080 5 C -0.126 4.126 6 C -0.075 4.075 7 C 0.366 3.634 8 O -0.452 6.452 9 N -0.331 5.331 10 C -0.019 4.019 11 C -0.151 4.151 12 C -0.098 4.098 13 C 0.023 3.977 14 C -0.126 4.126 15 C -0.166 4.166 16 C 0.016 3.984 17 N -0.331 5.331 18 C -0.382 4.382 19 H 0.079 0.921 20 C -0.236 4.236 21 N -0.576 5.576 22 Si 0.784 3.216 23 H -0.192 1.192 24 H -0.224 1.224 25 H -0.218 1.218 26 C 0.073 3.927 27 N -0.173 5.173 28 C -0.049 4.049 29 H 0.282 0.718 30 H 0.196 0.804 31 H 0.179 0.821 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.119 0.881 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.032 0.968 44 H 0.057 0.943 45 H 0.083 0.917 46 H 0.012 0.988 47 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -11.130 10.908 -10.785 18.952 hybrid contribution -0.370 -1.467 -0.212 1.528 sum -11.500 9.441 -10.997 18.501 Atomic orbital electron populations 1.25902 0.96403 0.94767 0.95683 1.19807 0.91806 1.04727 1.04727 1.17312 0.89103 1.00235 0.94720 1.21967 0.92539 0.94404 0.99061 1.22139 0.95382 0.96852 0.98256 1.21122 0.93313 1.02101 0.90938 1.17805 0.86714 0.76851 0.82007 1.90719 1.66887 1.53199 1.34400 1.48883 1.09222 1.68179 1.06784 1.22585 0.80277 1.00334 0.98686 1.22670 0.97944 1.00440 0.94084 1.21811 0.94671 0.97725 0.95621 1.22161 0.96073 1.01098 0.78392 1.21330 0.97634 0.95072 0.98517 1.21959 0.97434 0.98692 0.98482 1.21045 0.96364 0.87673 0.93282 1.44219 1.32606 1.03973 1.52346 1.19393 0.90836 0.84515 1.43413 0.92105 1.25891 0.95652 1.01445 1.00598 1.70060 1.04712 1.28307 1.54502 0.85392 0.78477 0.80858 0.76921 1.19153 1.22415 1.21773 1.20630 0.87000 0.95326 0.89788 1.67825 1.09094 1.10596 1.29737 1.23334 0.88642 0.94364 0.98540 0.71801 0.80434 0.82121 0.91935 0.89256 0.89436 0.89652 0.94324 0.88085 0.91936 0.91672 0.90182 0.92572 0.93093 0.96803 0.94288 0.91717 0.98773 0.80506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 19.25 74.32 1.43 0.13 16 2 C -0.21 -3.75 13.28 30.01 0.40 -3.36 16 3 C -0.01 -0.24 5.75 -21.20 -0.12 -0.36 16 4 C -0.05 -1.04 9.89 22.69 0.22 -0.82 16 5 C -0.11 -2.55 9.61 22.57 0.22 -2.34 16 6 C 0.06 1.93 6.73 41.88 0.28 2.21 16 7 C 0.58 20.89 7.86 86.83 0.68 21.57 16 8 O -0.57 -22.23 16.51 -3.83 -0.06 -22.30 16 9 N -0.60 -21.88 3.30 -812.83 -2.68 -24.56 16 10 C 0.10 3.48 7.11 86.76 0.62 4.10 16 11 C -0.11 -3.55 6.15 31.69 0.19 -3.35 16 12 C -0.10 -3.49 0.62 -51.88 -0.03 -3.52 16 13 C 0.14 5.49 4.60 86.36 0.40 5.88 16 14 C -0.09 -2.76 4.43 30.47 0.14 -2.62 16 15 C -0.13 -4.06 5.87 30.68 0.18 -3.88 16 16 C 0.14 5.67 6.50 86.34 0.56 6.23 16 17 N -0.61 -29.57 2.80 -699.98 -1.96 -31.54 16 18 C -0.25 -13.53 9.56 84.03 0.80 -12.72 16 19 H 0.06 3.24 7.83 -2.91 -0.02 3.22 16 20 C -0.04 -2.23 5.32 84.86 0.45 -1.78 16 21 N -0.93 -53.88 10.62 21.65 0.23 -53.65 16 22 Si 0.95 44.94 29.56 68.60 2.03 46.97 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 25 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 26 C 0.20 9.24 3.57 86.16 0.31 9.55 16 27 N -0.46 -14.34 6.77 -183.93 -1.25 -15.59 16 28 C 0.11 2.83 10.92 85.18 0.93 3.76 16 29 H 0.27 0.56 7.80 -4.42 -0.03 0.53 16 30 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 31 H 0.16 3.52 7.63 -2.91 -0.02 3.50 16 32 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.09 2.79 7.81 -2.39 -0.02 2.77 16 34 H 0.09 2.38 7.84 -2.39 -0.02 2.36 16 35 H 0.08 2.65 7.79 -2.39 -0.02 2.63 16 36 H 0.04 1.79 7.63 -2.39 -0.02 1.78 16 37 H 0.10 3.68 4.39 -2.38 -0.01 3.67 16 38 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 39 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.06 1.88 6.58 -2.39 -0.02 1.87 16 42 H 0.05 2.00 7.93 -2.38 -0.02 1.98 16 43 H 0.01 0.56 8.14 -2.39 -0.02 0.55 16 44 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 45 H 0.06 3.51 5.92 -2.38 -0.01 3.50 16 46 H -0.01 -0.29 8.09 -2.39 -0.02 -0.31 16 47 H 0.18 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -69.37 380.26 4.94 -64.43 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.97 Total: 17.54 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: 7.66 Total: 18.68 kcal Atomic # 7 Polarization: -119.67 SS G_CDS: -5.66 Total: -125.33 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.06 Total: -22.30 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -69.37 4.94 -64.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040497018.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.738 kcal (2) G-P(sol) polarization free energy of solvation -69.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds