Wall clock time and date at job start Tue Mar 31 2020 22:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39723 * 119.59530 * 347.27508 * 3 2 1 5 5 C 1.37969 * 119.20684 * 179.72185 * 4 3 2 6 6 C 1.40242 * 118.39646 * 0.53909 * 5 4 3 7 7 C 1.47674 * 120.43981 * 179.76242 * 6 5 4 8 8 O 1.21573 * 119.99984 * 155.75126 * 7 6 5 9 9 N 1.34779 * 120.00106 * 335.73761 * 7 6 5 10 10 C 1.47487 * 125.65599 * 353.94328 * 9 7 6 11 11 C 1.55023 * 104.89423 * 204.03252 * 10 9 7 12 12 C 1.54536 * 101.52606 * 323.61661 * 11 10 9 13 13 C 1.47176 * 125.66143 * 173.95655 * 9 7 6 14 14 C 1.52278 * 110.15772 * 276.40258 * 12 11 10 15 15 C 1.53322 * 109.41508 * 297.17598 * 14 12 11 16 16 N 1.46922 * 108.70657 * 306.49148 * 15 14 12 17 17 C 1.36940 * 120.56222 * 234.20960 * 16 15 14 18 18 H 1.07996 * 119.99928 * 35.36938 * 17 16 15 19 19 C 1.38814 * 119.99974 * 215.37910 * 17 16 15 20 20 N 1.31625 * 119.99896 * 355.59421 * 19 17 16 21 21 Si 1.86800 * 120.00023 * 175.59898 * 19 17 16 22 22 H 1.48507 * 109.46785 * 89.99844 * 21 19 17 23 23 H 1.48498 * 109.46903 * 209.99576 * 21 19 17 24 24 H 1.48491 * 109.47319 * 329.99937 * 21 19 17 25 25 C 1.46938 * 118.88084 * 54.22720 * 16 15 14 26 26 C 1.52278 * 110.15958 * 153.28339 * 12 11 10 27 27 C 1.39658 * 119.11666 * 359.48054 * 6 5 4 28 28 N 1.31475 * 120.71464 * 0.25172 * 27 6 5 29 29 H 4.51265 * 14.17495 * 359.97438 * 4 2 1 30 30 H 1.08009 * 120.39817 * 359.97438 * 4 3 2 31 31 H 1.08001 * 120.80680 * 180.27117 * 5 4 3 32 32 H 1.08994 * 110.35741 * 85.18163 * 10 9 7 33 33 H 1.08999 * 110.35311 * 322.88010 * 10 9 7 34 34 H 1.08999 * 111.01374 * 205.55232 * 11 10 9 35 35 H 1.09004 * 111.01388 * 81.67348 * 11 10 9 36 36 H 1.09002 * 109.90679 * 59.12684 * 13 9 7 37 37 H 1.08995 * 110.06668 * 297.94162 * 13 9 7 38 38 H 1.09001 * 109.48258 * 57.15938 * 14 12 11 39 39 H 1.09007 * 109.47987 * 177.19499 * 14 12 11 40 40 H 1.08997 * 109.59521 * 186.72765 * 15 14 12 41 41 H 1.08997 * 109.59646 * 66.25431 * 15 14 12 42 42 H 0.97003 * 119.99401 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.60259 * 185.99877 * 25 16 15 44 44 H 1.09003 * 109.72688 * 65.60323 * 25 16 15 45 45 H 1.08995 * 109.48261 * 182.79635 * 26 12 11 46 46 H 1.09003 * 109.47885 * 302.82107 * 26 12 11 47 47 H 1.08003 * 119.63895 * 180.27652 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.2965 -1.1842 0.2676 5 6 4.6762 -1.1757 0.2599 6 6 5.3342 0.0336 -0.0072 7 6 6.8096 0.0952 -0.0215 8 8 7.3756 0.9641 -0.6562 9 7 7.5287 -0.8116 0.6692 10 6 6.9776 -1.8348 1.5772 11 6 8.1381 -2.1728 2.5479 12 6 9.3623 -2.0814 1.6093 13 6 8.9942 -0.9449 0.6427 14 6 9.5437 -3.3914 0.8544 15 6 9.8321 -4.5191 1.8524 16 7 10.9679 -4.1227 2.6960 17 6 12.0663 -4.9323 2.8103 18 1 12.4037 -5.5078 1.9609 19 6 12.7461 -5.0135 4.0178 20 7 12.3885 -4.2480 5.0271 21 14 14.1684 -6.2091 4.2104 22 1 15.4357 -5.5366 3.8267 23 1 14.2528 -6.6542 5.6246 24 1 13.9476 -7.3866 3.3331 25 6 10.9050 -2.8430 3.4153 26 6 10.6099 -1.7263 2.4070 27 6 4.5757 1.1775 -0.2651 28 7 3.2619 1.1286 -0.2543 29 1 -1.0501 -0.0009 0.0007 30 1 2.7568 -2.0967 0.4740 31 1 5.2359 -2.0776 0.4589 32 1 6.6831 -2.7212 1.0154 33 1 6.1270 -1.4340 2.1283 34 1 8.0293 -3.1794 2.9517 35 1 8.2042 -1.4369 3.3493 36 1 9.4575 -0.0143 0.9706 37 1 9.3292 -1.1914 -0.3648 38 1 8.6336 -3.6206 0.3001 39 1 10.3788 -3.2982 0.1600 40 1 10.0800 -5.4320 1.3109 41 1 8.9547 -4.6882 2.4765 42 1 12.8634 -4.3051 5.8710 43 1 11.8601 -2.6510 3.9042 44 1 10.1125 -2.8795 4.1627 45 1 11.4559 -1.6161 1.7287 46 1 10.4464 -0.7894 2.9395 47 1 5.0738 2.1123 -0.4762 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040917407.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:51 Heat of formation + Delta-G solvation = 92.200096 kcal Electronic energy + Delta-G solvation = -28973.208149 eV Core-core repulsion = 25123.438474 eV Total energy + Delta-G solvation = -3849.769675 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.13910 -40.00119 -38.43300 -35.99623 -34.37061 -33.54091 -32.70464 -31.25447 -30.77359 -30.09932 -29.46317 -27.25984 -25.46810 -24.31975 -23.60657 -23.19090 -22.21120 -21.02283 -19.94466 -19.84313 -18.37830 -17.46436 -16.88781 -16.55435 -16.38351 -16.17133 -15.60067 -14.94417 -14.78911 -14.60132 -14.22286 -14.07051 -14.01567 -13.45085 -13.40491 -13.33916 -13.03983 -12.77280 -12.61547 -12.37847 -12.25532 -11.67287 -11.53112 -11.30402 -11.26545 -11.06623 -10.87031 -10.74615 -10.56154 -10.42861 -10.33434 -10.27423 -10.09975 -9.88451 -9.83168 -9.58878 -9.45571 -9.26063 -8.71296 -8.46983 -6.58892 -5.82435 -3.35895 -0.01563 0.79081 2.17194 2.18884 2.76173 2.90290 3.33710 3.40956 3.42098 3.46675 3.61094 4.12264 4.28980 4.38057 4.44113 4.56566 4.60804 4.65860 4.86096 5.00068 5.15861 5.19624 5.27081 5.33316 5.37815 5.38558 5.56247 5.60864 5.62559 5.72755 5.84857 5.92760 5.98632 6.07563 6.09969 6.15241 6.20931 6.31411 6.49439 6.60401 6.64265 6.71671 6.81700 6.92386 6.98145 7.32685 7.39954 7.43424 7.74361 7.78958 7.94935 8.49708 9.21071 9.79845 10.38630 11.22680 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026312 B = 0.002242 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.913134 B =12485.725951 C =13021.771475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.152 4.152 3 C 0.243 3.757 4 C -0.152 4.152 5 C -0.050 4.050 6 C -0.173 4.173 7 C 0.574 3.426 8 O -0.535 6.535 9 N -0.606 5.606 10 C 0.091 3.909 11 C -0.123 4.123 12 C -0.055 4.055 13 C 0.115 3.885 14 C -0.120 4.120 15 C 0.146 3.854 16 N -0.592 5.592 17 C -0.253 4.253 18 H 0.063 0.937 19 C 0.009 3.991 20 N -0.904 5.904 21 Si 0.902 3.098 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.167 3.833 26 C -0.128 4.128 27 C 0.164 3.836 28 N -0.473 5.473 29 H 0.231 0.769 30 H 0.147 0.853 31 H 0.158 0.842 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.019 0.981 42 H 0.254 0.746 43 H 0.102 0.898 44 H 0.016 0.984 45 H 0.056 0.944 46 H 0.050 0.950 47 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.505 5.738 -7.493 21.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.153 4.153 3 C 0.108 3.892 4 C -0.171 4.171 5 C -0.075 4.075 6 C -0.178 4.178 7 C 0.362 3.638 8 O -0.413 6.413 9 N -0.339 5.339 10 C -0.031 4.031 11 C -0.161 4.161 12 C -0.056 4.056 13 C -0.006 4.006 14 C -0.159 4.159 15 C 0.020 3.980 16 N -0.315 5.315 17 C -0.383 4.383 18 H 0.080 0.920 19 C -0.190 4.190 20 N -0.549 5.549 21 Si 0.732 3.268 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.204 1.204 25 C 0.042 3.958 26 C -0.168 4.168 27 C 0.004 3.996 28 N -0.181 5.181 29 H 0.248 0.752 30 H 0.165 0.835 31 H 0.175 0.825 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.037 0.963 42 H 0.065 0.935 43 H 0.120 0.880 44 H 0.035 0.965 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -19.590 7.001 -7.867 22.241 hybrid contribution 1.006 -1.367 0.308 1.724 sum -18.585 5.635 -7.559 20.839 Atomic orbital electron populations 1.24981 0.95649 0.97960 0.96483 1.19284 0.91041 1.02092 1.02859 1.16783 0.88230 0.89449 0.94713 1.22018 0.94406 0.98977 1.01734 1.22287 0.94322 0.98408 0.92510 1.21095 0.94734 0.96080 1.05860 1.17611 0.85785 0.80920 0.79458 1.90807 1.71931 1.34954 1.43579 1.48475 1.08397 1.32604 1.44404 1.22776 0.98035 0.90705 0.91594 1.22916 0.92718 1.03584 0.96879 1.21001 0.96105 0.94110 0.94392 1.22219 0.78459 0.99575 1.00381 1.21951 1.00101 0.95392 0.98493 1.20965 0.90883 0.94338 0.91824 1.43982 1.15046 1.18522 1.53973 1.19143 1.04340 1.20614 0.94195 0.91959 1.25312 0.99884 0.98432 0.95356 1.69875 1.42360 1.39527 1.03090 0.86298 0.82022 0.81430 0.77054 1.21434 1.21567 1.20436 1.21014 1.02304 0.82113 0.90377 1.22171 0.95035 1.00126 0.99449 1.22946 0.87889 0.98034 0.90699 1.67856 1.09643 1.27232 1.13387 0.75228 0.83539 0.82520 0.90881 0.90607 0.88665 0.90567 0.91160 0.91367 0.93261 0.92062 0.92850 0.96279 0.93518 0.88018 0.96540 0.92487 0.93157 0.80896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.88 19.25 29.55 0.57 -0.31 16 2 C -0.15 -1.45 13.43 -38.84 -0.52 -1.97 16 3 C 0.24 2.59 6.59 -84.91 -0.56 2.03 16 4 C -0.15 -1.29 9.77 -39.13 -0.38 -1.67 16 5 C -0.05 -0.45 8.18 -38.93 -0.32 -0.77 16 6 C -0.17 -1.96 5.68 -104.76 -0.60 -2.56 16 7 C 0.57 7.89 7.65 -12.41 -0.09 7.79 16 8 O -0.53 -9.05 16.94 5.30 0.09 -8.96 16 9 N -0.61 -7.76 3.33 -171.85 -0.57 -8.33 16 10 C 0.09 0.95 4.68 -2.43 -0.01 0.94 16 11 C -0.12 -1.60 4.92 -24.86 -0.12 -1.72 16 12 C -0.06 -0.82 0.55 -154.09 -0.09 -0.90 16 13 C 0.12 1.63 6.06 -3.32 -0.02 1.61 16 14 C -0.12 -1.86 4.74 -26.93 -0.13 -1.99 16 15 C 0.15 2.76 6.19 -3.65 -0.02 2.74 16 16 N -0.59 -13.79 2.99 -172.16 -0.51 -14.30 16 17 C -0.25 -6.62 9.55 -15.06 -0.14 -6.76 16 18 H 0.06 1.62 7.83 -52.49 -0.41 1.20 16 19 C 0.01 0.23 5.32 -17.43 -0.09 0.14 16 20 N -0.90 -25.01 10.59 55.49 0.59 -24.42 16 21 Si 0.90 21.01 29.56 -169.99 -5.02 15.98 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 C 0.17 3.70 4.99 -3.64 -0.02 3.68 16 26 C -0.13 -2.26 4.72 -26.94 -0.13 -2.39 16 27 C 0.16 1.89 10.75 -17.17 -0.18 1.71 16 28 N -0.47 -5.71 10.26 -10.78 -0.11 -5.82 16 29 H 0.23 0.51 7.80 -54.09 -0.42 0.09 16 30 H 0.15 0.85 8.06 -52.48 -0.42 0.43 16 31 H 0.16 1.14 4.68 -52.49 -0.25 0.89 16 32 H 0.07 0.65 6.42 -51.93 -0.33 0.31 16 33 H 0.08 0.68 6.85 -51.93 -0.36 0.33 16 34 H 0.10 1.31 6.08 -51.93 -0.32 0.99 16 35 H 0.08 1.01 8.01 -51.93 -0.42 0.60 16 36 H 0.07 1.04 7.78 -51.93 -0.40 0.64 16 37 H 0.07 0.98 7.83 -51.93 -0.41 0.58 16 38 H 0.05 0.65 7.47 -51.93 -0.39 0.26 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 41 H 0.02 0.35 6.47 -51.93 -0.34 0.02 16 42 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 43 H 0.10 2.62 5.86 -51.93 -0.30 2.31 16 44 H 0.02 0.38 7.56 -51.93 -0.39 -0.02 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.05 0.82 8.11 -51.93 -0.42 0.40 16 47 H 0.17 1.84 7.83 -52.48 -0.41 1.43 16 LS Contribution 375.20 15.07 5.65 5.65 Total: -1.00 -31.37 375.20 -9.13 -40.50 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.38 Total: 0.11 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -2.86 Total: -0.40 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.61 Total: -52.88 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.37 -9.13 -40.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040917407.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.699 kcal (2) G-P(sol) polarization free energy of solvation -31.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds