Wall clock time and date at job start Tue Mar 31 2020 22:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.29400 * 125.58352 * 2 1 4 4 N 1.40174 * 108.13932 * 179.97438 * 3 2 1 5 5 C 1.46494 * 126.34991 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.46830 * 270.02587 * 5 4 3 7 7 O 1.21280 * 120.00307 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99623 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00295 * 0.02562 * 8 6 5 10 10 C 1.46505 * 119.99729 * 179.97438 * 8 6 5 11 11 H 1.08999 * 110.88693 * 3.87860 * 10 8 6 12 12 C 1.54908 * 111.03573 * 127.78829 * 10 8 6 13 13 N 1.47422 * 104.83357 * 155.09875 * 12 10 8 14 14 C 1.36934 * 125.65321 * 155.91756 * 13 12 10 15 15 H 1.08007 * 119.99611 * 359.96759 * 14 13 12 16 16 C 1.38808 * 120.00627 * 179.97438 * 14 13 12 17 17 N 1.31621 * 119.99418 * 359.97438 * 16 14 13 18 18 Si 1.86790 * 120.00320 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47113 * 89.99796 * 18 16 14 20 20 H 1.48502 * 109.47095 * 209.99480 * 18 16 14 21 21 H 1.48503 * 109.47330 * 329.99496 * 18 16 14 22 22 C 1.47031 * 108.70136 * 335.86884 * 13 12 10 23 23 C 1.54327 * 107.26879 * 1.05978 * 22 13 12 24 24 H 1.08997 * 110.72099 * 263.64813 * 23 22 13 25 25 O 1.42901 * 110.71576 * 140.55791 * 23 22 13 26 26 C 1.34947 * 107.29531 * 0.26191 * 4 3 2 27 27 O 1.21813 * 126.29564 * 179.71756 * 26 4 3 28 28 N 1.34811 * 107.39750 * 359.57873 * 26 4 3 29 29 C 1.46503 * 125.83153 * 180.13493 * 28 26 4 30 30 H 1.09001 * 109.47139 * 0.02967 * 1 2 3 31 31 H 1.09004 * 109.46732 * 120.02548 * 1 2 3 32 32 H 1.09000 * 109.47102 * 240.02927 * 1 2 3 33 33 H 1.08994 * 109.47236 * 150.02607 * 5 4 3 34 34 H 1.08999 * 109.47300 * 30.02327 * 5 4 3 35 35 H 1.08997 * 109.47034 * 270.00001 * 9 8 6 36 36 H 1.09003 * 109.47046 * 29.99632 * 9 8 6 37 37 H 1.08993 * 109.47173 * 150.00028 * 9 8 6 38 38 H 1.09000 * 110.36459 * 273.93329 * 12 10 8 39 39 H 1.08998 * 110.36772 * 36.25498 * 12 10 8 40 40 H 0.97008 * 119.99709 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.88059 * 241.64343 * 22 13 12 42 42 H 1.08994 * 109.87878 * 120.47623 * 22 13 12 43 43 H 0.96704 * 114.00059 * 61.45137 * 25 23 22 44 44 H 1.08997 * 109.47545 * 270.33414 * 29 28 26 45 45 H 1.08999 * 109.46833 * 30.34002 * 29 28 26 46 46 H 1.09000 * 109.46863 * 150.33157 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2601 1.0524 0.0000 4 7 3.5973 0.6322 0.0006 5 6 4.7794 1.4975 0.0013 6 6 5.1850 1.7949 -1.4193 7 8 4.5495 1.3295 -2.3415 8 7 6.2540 2.5782 -1.6649 9 6 7.0219 3.1400 -0.5509 10 6 6.6487 2.8669 -3.0459 11 1 5.9402 2.4329 -3.7514 12 6 6.7966 4.3919 -3.2747 13 7 7.7361 4.5146 -4.4041 14 6 7.8253 5.5833 -5.2556 15 1 7.1701 6.4323 -5.1270 16 6 8.7574 5.5756 -6.2841 17 7 9.5561 4.5411 -6.4405 18 14 8.8785 7.0331 -7.4460 19 1 9.8509 8.0172 -6.9061 20 1 9.3354 6.5664 -8.7796 21 1 7.5455 7.6746 -7.5760 22 6 8.5624 3.3000 -4.4641 23 6 8.0906 2.3683 -3.3280 24 1 8.7212 2.4848 -2.4467 25 8 8.0789 1.0070 -3.7625 26 6 3.5938 -0.7173 -0.0049 27 8 4.5737 -1.4409 -0.0111 28 7 2.3064 -1.1171 0.0006 29 6 1.8395 -2.5057 0.0003 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5143 -0.8898 32 1 -0.3633 -0.5134 0.8902 33 1 5.5981 0.9937 0.5150 34 1 4.5468 2.4300 0.5156 35 1 6.6051 4.1083 -0.2741 36 1 6.9703 2.4646 0.3031 37 1 8.0617 3.2650 -0.8529 38 1 5.8334 4.8319 -3.5330 39 1 7.2072 4.8707 -2.3858 40 1 10.2078 4.5358 -7.1590 41 1 9.6116 3.5580 -4.3204 42 1 8.4282 2.8076 -5.4272 43 1 8.9465 0.6706 -4.0255 44 1 1.7243 -2.8502 -1.0273 45 1 2.5670 -3.1336 0.5147 46 1 0.8799 -2.5665 0.5136 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047613145.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:56 Heat of formation + Delta-G solvation = -21.799278 kcal Electronic energy + Delta-G solvation = -30409.987255 eV Core-core repulsion = 26144.424933 eV Total energy + Delta-G solvation = -4265.562322 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.51066 -41.31486 -39.52075 -38.56192 -36.80272 -36.47084 -36.34577 -33.95570 -33.26907 -31.57032 -30.29812 -29.10666 -28.32076 -27.92206 -27.31259 -26.07654 -23.18158 -22.36232 -22.17619 -21.87626 -20.37924 -19.05623 -18.99939 -18.44629 -18.16801 -17.63319 -17.27805 -17.02702 -16.96632 -16.49112 -16.25633 -15.84209 -15.45193 -14.94020 -14.78254 -14.56103 -14.55313 -14.39998 -14.19474 -14.09697 -13.71830 -13.62790 -13.45997 -13.24469 -13.19568 -13.14092 -12.95641 -12.92307 -12.87853 -12.75317 -12.66360 -12.10279 -11.90941 -11.64783 -11.54353 -11.44580 -11.02651 -10.79871 -10.76129 -9.76793 -9.61957 -8.99572 -7.90549 -5.28760 0.61504 0.95648 1.40759 1.44598 1.47173 1.47929 1.56053 1.83035 2.10841 2.46342 3.07980 3.30304 3.32809 3.38394 3.54617 3.75107 3.80701 3.97634 3.99796 4.04714 4.05968 4.19998 4.29664 4.37934 4.42633 4.43115 4.66416 4.70187 4.76059 4.76868 4.82557 4.83720 4.91212 4.96182 5.01169 5.07986 5.32954 5.38389 5.42518 5.61225 5.64352 6.09465 6.25231 6.57393 6.77738 6.86018 6.99154 7.01297 7.66111 8.29016 9.19509 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021830 B = 0.002504 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.314513 B =11178.054972 C =11541.778405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.285 3.715 3 N -0.308 5.308 4 N -0.446 5.446 5 C 0.150 3.850 6 C 0.492 3.508 7 O -0.583 6.583 8 N -0.594 5.594 9 C 0.058 3.942 10 C 0.146 3.854 11 H 0.068 0.932 12 C 0.138 3.862 13 N -0.621 5.621 14 C -0.245 4.245 15 H 0.088 0.912 16 C -0.065 4.065 17 N -0.952 5.952 18 Si 0.984 3.016 19 H -0.280 1.280 20 H -0.296 1.296 21 H -0.270 1.270 22 C 0.165 3.835 23 C 0.081 3.919 24 H 0.090 0.910 25 O -0.576 6.576 26 C 0.633 3.367 27 O -0.597 6.597 28 N -0.556 5.556 29 C 0.089 3.911 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.126 0.874 33 H 0.143 0.857 34 H 0.164 0.836 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.042 0.958 39 H 0.059 0.941 40 H 0.249 0.751 41 H 0.027 0.973 42 H 0.015 0.985 43 H 0.391 0.609 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.898 -9.569 21.596 29.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.008 3.992 3 N -0.131 5.131 4 N -0.264 5.264 5 C 0.025 3.975 6 C 0.279 3.721 7 O -0.462 6.462 8 N -0.327 5.327 9 C -0.082 4.082 10 C 0.040 3.960 11 H 0.086 0.914 12 C 0.012 3.988 13 N -0.349 5.349 14 C -0.374 4.374 15 H 0.106 0.894 16 C -0.258 4.258 17 N -0.600 5.600 18 Si 0.812 3.188 19 H -0.206 1.206 20 H -0.223 1.223 21 H -0.194 1.194 22 C 0.039 3.961 23 C 0.021 3.979 24 H 0.107 0.893 25 O -0.383 6.383 26 C 0.332 3.668 27 O -0.474 6.474 28 N -0.284 5.284 29 C -0.052 4.052 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.144 0.856 33 H 0.161 0.839 34 H 0.181 0.819 35 H 0.107 0.893 36 H 0.124 0.876 37 H 0.097 0.903 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.033 0.967 43 H 0.241 0.759 44 H 0.095 0.905 45 H 0.098 0.902 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.984 -9.169 21.108 28.602 hybrid contribution 1.460 -0.242 -1.650 2.217 sum -15.523 -9.412 19.458 26.611 Atomic orbital electron populations 1.20773 0.78626 1.07170 1.06598 1.25312 0.98370 0.80724 0.94817 1.76995 0.86850 1.22479 1.26770 1.48435 1.04849 1.04676 1.68479 1.21502 0.85317 0.97748 0.92905 1.21653 0.79931 0.77766 0.92721 1.90695 1.54812 1.52797 1.47867 1.47745 1.28957 1.49116 1.06836 1.22308 0.97110 1.00858 0.87970 1.21891 0.94802 0.95779 0.83544 0.91353 1.21858 0.93484 0.92062 0.91417 1.44516 1.39813 1.17723 1.32861 1.19478 1.15823 0.95438 1.06653 0.89445 1.25721 0.98415 1.00925 1.00765 1.70156 1.24567 1.31173 1.34110 0.85003 0.78103 0.78227 0.77514 1.20620 1.22252 1.19440 1.21580 0.93823 0.86143 0.94528 1.23411 0.96394 0.81595 0.96548 0.89282 1.86492 1.37155 1.26654 1.87984 1.17043 0.84637 0.83606 0.81520 1.91025 1.36541 1.59036 1.60766 1.46065 1.05385 1.10216 1.66753 1.22187 1.02993 0.75423 1.04547 0.87561 0.87218 0.85626 0.83923 0.81854 0.89324 0.87606 0.90273 0.93965 0.92302 0.94213 0.95450 0.96657 0.75901 0.90530 0.90161 0.84640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 9.85 71.24 0.70 0.34 16 2 C 0.29 5.18 7.98 137.69 1.10 6.28 16 3 N -0.31 -7.79 12.53 -49.59 -0.62 -8.41 16 4 N -0.45 -12.99 3.11 -481.80 -1.50 -14.49 16 5 C 0.15 3.64 5.42 85.63 0.46 4.10 16 6 C 0.49 16.88 7.74 87.66 0.68 17.56 16 7 O -0.58 -26.76 15.81 -3.03 -0.05 -26.81 16 8 N -0.59 -18.58 2.91 -814.82 -2.37 -20.95 16 9 C 0.06 1.11 8.86 127.77 1.13 2.24 16 10 C 0.15 5.92 3.17 46.38 0.15 6.06 16 11 H 0.07 3.42 7.02 -2.39 -0.02 3.40 16 12 C 0.14 5.78 6.79 86.86 0.59 6.37 16 13 N -0.62 -32.55 3.39 -691.98 -2.35 -34.90 16 14 C -0.25 -13.86 10.28 84.03 0.86 -13.00 16 15 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 16 C -0.07 -3.74 5.49 84.86 0.47 -3.27 16 17 N -0.95 -57.56 10.31 21.65 0.22 -57.33 16 18 Si 0.98 45.99 29.55 68.60 2.03 48.02 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 C 0.17 8.37 5.14 86.73 0.45 8.82 16 23 C 0.08 3.27 3.89 31.78 0.12 3.39 16 24 H 0.09 3.04 6.41 -2.39 -0.02 3.03 16 25 O -0.58 -23.60 13.39 -148.98 -2.00 -25.60 16 26 C 0.63 19.99 8.60 178.99 1.54 21.53 16 27 O -0.60 -23.03 17.72 -4.71 -0.08 -23.12 16 28 N -0.56 -11.97 3.14 -668.82 -2.10 -14.07 16 29 C 0.09 1.01 10.85 127.77 1.39 2.40 16 30 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 32 H 0.13 -0.19 8.14 -2.39 -0.02 -0.21 16 33 H 0.14 2.84 7.37 -2.39 -0.02 2.83 16 34 H 0.16 2.57 8.11 -2.39 -0.02 2.55 16 35 H 0.09 1.31 8.09 -2.39 -0.02 1.29 16 36 H 0.11 1.26 6.44 -2.39 -0.02 1.25 16 37 H 0.08 1.57 6.41 -2.39 -0.02 1.56 16 38 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.06 2.13 7.01 -2.39 -0.02 2.11 16 40 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 41 H 0.03 1.48 7.50 -2.39 -0.02 1.46 16 42 H 0.02 0.90 7.30 -2.39 -0.02 0.88 16 43 H 0.39 12.57 9.11 -74.05 -0.67 11.90 16 44 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 46 H 0.14 0.19 7.79 -2.39 -0.02 0.17 16 Total: -1.00 -97.45 380.76 1.17 -96.28 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.35 Total: 18.56 kcal Atomic # 6 Polarization: 53.19 SS G_CDS: 9.64 Total: 62.82 kcal Atomic # 7 Polarization: -141.44 SS G_CDS: -8.72 Total: -150.16 kcal Atomic # 8 Polarization: -73.40 SS G_CDS: -2.13 Total: -75.52 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -97.45 1.17 -96.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047613145.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.485 kcal (2) G-P(sol) polarization free energy of solvation -97.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds