Wall clock time and date at job start Tue Mar 31 2020 22:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39987 * 120.46132 * 321.01103 * 3 2 1 5 5 C 1.38218 * 118.36507 * 179.72573 * 4 3 2 6 6 C 1.39487 * 119.21117 * 0.49259 * 5 4 3 7 7 C 1.47988 * 119.57525 * 179.76994 * 6 5 4 8 8 O 1.21540 * 119.99587 * 359.72826 * 7 6 5 9 9 N 1.34774 * 120.00308 * 179.72770 * 7 6 5 10 10 C 1.46499 * 120.00027 * 179.72634 * 9 7 6 11 11 C 1.53002 * 109.47116 * 180.27041 * 10 9 7 12 12 H 1.08998 * 109.43474 * 299.70243 * 11 10 9 13 13 C 1.53151 * 109.43463 * 59.61516 * 11 10 9 14 14 C 1.53699 * 108.87741 * 66.16668 * 13 11 10 15 15 H 1.08993 * 112.10226 * 187.61860 * 14 13 11 16 16 C 1.54606 * 107.83550 * 312.23649 * 14 13 11 17 17 C 1.54310 * 104.75141 * 88.66892 * 16 14 13 18 18 C 1.54611 * 104.75509 * 359.97438 * 17 16 14 19 19 H 1.08992 * 112.19598 * 146.79792 * 18 17 16 20 20 C 1.53150 * 109.43511 * 179.83224 * 11 10 9 21 21 N 1.48300 * 104.25592 * 25.14303 * 18 17 16 22 22 C 1.36930 * 128.21175 * 138.37920 * 21 18 17 23 23 H 1.07998 * 120.00607 * 212.93906 * 22 21 18 24 24 C 1.38813 * 119.99886 * 32.93574 * 22 21 18 25 25 N 1.31622 * 119.99860 * 5.15432 * 24 22 21 26 26 Si 1.86798 * 120.00154 * 185.14490 * 24 22 21 27 27 H 1.48503 * 109.46894 * 60.00418 * 26 24 22 28 28 H 1.48506 * 109.47127 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47424 * 300.00494 * 26 24 22 30 30 N 1.32830 * 120.85824 * 359.49128 * 6 5 4 31 31 C 1.31293 * 121.78779 * 0.25877 * 30 6 5 32 32 H 4.52935 * 13.94770 * 359.97438 * 4 2 1 33 33 H 1.07995 * 120.81822 * 359.97438 * 4 3 2 34 34 H 1.08002 * 120.39679 * 180.26289 * 5 4 3 35 35 H 0.97002 * 119.99967 * 359.97438 * 9 7 6 36 36 H 1.08995 * 109.46897 * 300.27249 * 10 9 7 37 37 H 1.09002 * 109.47048 * 60.27062 * 10 9 7 38 38 H 1.08993 * 109.57176 * 185.99285 * 13 11 10 39 39 H 1.09004 * 109.56498 * 306.35418 * 13 11 10 40 40 H 1.08997 * 110.38344 * 207.47986 * 16 14 13 41 41 H 1.08994 * 110.38664 * 329.85003 * 16 14 13 42 42 H 1.08999 * 110.38484 * 241.17557 * 17 16 14 43 43 H 1.09006 * 110.38546 * 118.81311 * 17 16 14 44 44 H 1.08998 * 109.56847 * 53.64516 * 20 11 10 45 45 H 1.08997 * 109.56657 * 174.00823 * 20 11 10 46 46 H 0.96999 * 119.99646 * 179.97438 * 25 24 22 47 47 H 1.08002 * 119.65436 * 179.97438 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3161 -0.9369 0.7592 5 6 4.6973 -0.9007 0.7229 6 6 5.3327 0.0677 -0.0545 7 6 6.8112 0.1170 -0.0953 8 8 7.4638 -0.6798 0.5500 9 7 7.4340 1.0456 -0.8478 10 6 8.8976 1.0982 -0.8834 11 6 9.3448 2.2385 -1.8003 12 1 8.9670 2.0632 -2.8076 13 6 8.7906 3.5647 -1.2717 14 6 9.4485 3.8741 0.0825 15 1 8.9966 4.7378 0.5702 16 6 9.3757 2.5948 0.9476 17 6 10.6601 1.8128 0.6014 18 6 11.3880 2.6927 -0.4409 19 1 12.4722 2.6183 -0.3574 20 6 10.8749 2.2954 -1.8336 21 7 10.8977 4.0651 -0.1664 22 6 11.6136 5.2322 -0.1469 23 1 11.3362 6.0247 0.5324 24 6 12.6960 5.3969 -1.0002 25 7 12.9727 4.4747 -1.8977 26 14 13.7597 6.9273 -0.8752 27 1 14.3578 7.0049 0.4819 28 1 14.8415 6.8626 -1.8905 29 1 12.9251 8.1314 -1.1178 30 7 4.6279 0.9426 -0.7631 31 6 3.3150 0.9381 -0.7593 32 1 -1.0500 -0.0003 0.0009 33 1 2.7975 -1.6730 1.3554 34 1 5.2778 -1.6113 1.2925 35 1 6.9132 1.6813 -1.3631 36 1 9.2795 1.2701 0.1229 37 1 9.2861 0.1531 -1.2629 38 1 9.0172 4.3628 -1.9786 39 1 7.7112 3.4839 -1.1432 40 1 9.3623 2.8528 2.0065 41 1 8.4935 2.0101 0.6872 42 1 10.4099 0.8432 0.1707 43 1 11.2787 1.6861 1.4900 44 1 11.2709 1.3162 -2.1029 45 1 11.1968 3.0354 -2.5663 46 1 13.7288 4.5899 -2.4942 47 1 2.7765 1.6659 -1.3482 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048582450.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:21 Heat of formation + Delta-G solvation = 174.737179 kcal Electronic energy + Delta-G solvation = -29526.897511 eV Core-core repulsion = 25680.706912 eV Total energy + Delta-G solvation = -3846.190599 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.32848 -40.57770 -38.59076 -34.83541 -34.64693 -32.84816 -32.49008 -31.45153 -31.01698 -30.53394 -29.61603 -26.87983 -25.12953 -23.95358 -23.42841 -23.14624 -21.04470 -20.59006 -19.53102 -19.34769 -18.88441 -18.02953 -17.16609 -16.79877 -16.09698 -15.83985 -15.33702 -15.13003 -14.94513 -14.50118 -14.12198 -14.04324 -13.61408 -13.37593 -12.95034 -12.79786 -12.65037 -12.59465 -12.03117 -11.91649 -11.64005 -11.44745 -11.34370 -11.32727 -11.15298 -10.84773 -10.74763 -10.48292 -10.32497 -10.20647 -10.13563 -9.85210 -9.71478 -9.57943 -9.37559 -9.31377 -9.17875 -9.11155 -8.50749 -8.11343 -6.54683 -5.80697 -3.24826 0.01503 0.84193 2.21297 2.25198 3.02495 3.20859 3.38360 3.43476 3.44285 3.67545 3.70641 3.97407 4.37039 4.46935 4.58857 4.71241 4.87558 5.28716 5.31462 5.33615 5.37881 5.46956 5.57239 5.59066 5.67578 5.71073 5.82850 5.86792 5.96230 6.14587 6.15882 6.18387 6.24745 6.36096 6.46756 6.48338 6.64156 6.72006 6.72874 6.79723 6.95252 6.98271 7.04234 7.15834 7.21854 7.33075 7.50947 7.69026 7.76286 7.84258 8.30172 8.32930 9.14102 9.74086 10.64750 11.32507 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025200 B = 0.002452 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.837963 B =11416.334629 C =11878.938524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.154 4.154 3 C -0.026 4.026 4 C -0.060 4.060 5 C -0.111 4.111 6 C 0.093 3.907 7 C 0.559 3.441 8 O -0.537 6.537 9 N -0.695 5.695 10 C -0.001 4.001 11 C -0.084 4.084 12 H 0.051 0.949 13 C -0.122 4.122 14 C 0.149 3.851 15 H 0.064 0.936 16 C -0.162 4.162 17 C -0.172 4.172 18 C 0.187 3.813 19 H 0.082 0.918 20 C -0.112 4.112 21 N -0.579 5.579 22 C -0.234 4.234 23 H 0.065 0.935 24 C 0.010 3.990 25 N -0.899 5.899 26 Si 0.906 3.094 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.283 1.283 30 N -0.454 5.454 31 C 0.125 3.875 32 H 0.227 0.773 33 H 0.145 0.855 34 H 0.155 0.845 35 H 0.405 0.595 36 H 0.196 0.804 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.040 0.960 40 H 0.050 0.950 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.054 0.946 44 H 0.036 0.964 45 H 0.097 0.903 46 H 0.254 0.746 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.981 -10.337 2.419 23.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.155 4.155 3 C -0.028 4.028 4 C -0.085 4.085 5 C -0.132 4.132 6 C -0.045 4.045 7 C 0.343 3.657 8 O -0.415 6.415 9 N -0.345 5.345 10 C -0.119 4.119 11 C -0.103 4.103 12 H 0.069 0.931 13 C -0.162 4.162 14 C 0.042 3.958 15 H 0.082 0.918 16 C -0.200 4.200 17 C -0.210 4.210 18 C 0.080 3.920 19 H 0.100 0.900 20 C -0.152 4.152 21 N -0.301 5.301 22 C -0.363 4.363 23 H 0.083 0.917 24 C -0.190 4.190 25 N -0.542 5.542 26 Si 0.736 3.264 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.210 1.210 30 N -0.164 5.164 31 C -0.035 4.035 32 H 0.244 0.756 33 H 0.163 0.837 34 H 0.173 0.827 35 H 0.241 0.759 36 H 0.211 0.789 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.073 0.927 44 H 0.055 0.945 45 H 0.115 0.885 46 H 0.064 0.936 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -19.718 -10.139 2.230 22.284 hybrid contribution -0.507 0.435 -0.110 0.677 sum -20.225 -9.704 2.120 22.533 Atomic orbital electron populations 1.24962 0.95750 0.98340 0.98288 1.19677 0.91574 1.02127 1.02116 1.17156 0.88024 0.98025 0.99585 1.21673 0.93539 0.96944 0.96351 1.22086 0.94399 0.98593 0.98101 1.21508 0.94973 0.93046 0.94996 1.17769 0.85387 0.81867 0.80708 1.90789 1.65713 1.40710 1.44247 1.46279 1.09129 1.32932 1.46170 1.25384 0.77454 0.98537 1.10555 1.21262 0.98538 0.93769 0.96755 0.93069 1.22166 0.96995 0.96920 1.00124 1.21547 0.87775 0.94191 0.92316 0.91801 1.23390 0.98148 0.98709 0.99751 1.23503 0.96945 0.99563 1.01037 1.21181 0.97267 0.83816 0.89718 0.89993 1.22102 0.91023 1.00304 1.01784 1.44973 1.00794 1.02183 1.82132 1.18776 1.09966 0.92769 1.14759 0.91746 1.25232 1.00614 0.97588 0.95543 1.69872 1.29262 1.34072 1.21033 0.86331 0.79899 0.83007 0.77196 1.21036 1.21651 1.20955 1.67617 1.08212 1.22296 1.18268 1.22964 0.89080 0.96002 0.95468 0.75595 0.83686 0.82685 0.75850 0.78871 0.92989 0.91709 0.94100 0.93081 0.88993 0.89330 0.92711 0.94509 0.88489 0.93601 0.81577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 19.25 29.55 0.57 -0.35 16 2 C -0.15 -1.24 13.28 -38.84 -0.52 -1.75 16 3 C -0.03 -0.23 5.75 -106.68 -0.61 -0.84 16 4 C -0.06 -0.50 9.89 -38.93 -0.39 -0.89 16 5 C -0.11 -1.15 9.61 -39.12 -0.38 -1.53 16 6 C 0.09 1.17 6.75 -82.97 -0.56 0.61 16 7 C 0.56 8.43 7.54 -12.27 -0.09 8.33 16 8 O -0.54 -9.38 16.31 5.33 0.09 -9.29 16 9 N -0.70 -10.30 4.35 -61.20 -0.27 -10.56 16 10 C 0.00 -0.02 2.70 -4.04 -0.01 -0.03 16 11 C -0.08 -1.51 2.77 -90.46 -0.25 -1.76 16 12 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 13 C -0.12 -2.27 5.27 -26.29 -0.14 -2.41 16 14 C 0.15 3.06 4.32 -65.74 -0.28 2.77 16 15 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 16 C -0.16 -2.96 5.72 -25.20 -0.14 -3.10 16 17 C -0.17 -3.28 5.72 -25.20 -0.14 -3.42 16 18 C 0.19 4.21 3.10 -65.75 -0.20 4.00 16 19 H 0.08 2.08 7.52 -51.93 -0.39 1.69 16 20 C -0.11 -2.35 5.17 -26.31 -0.14 -2.49 16 21 N -0.58 -14.07 2.73 -152.80 -0.42 -14.49 16 22 C -0.23 -6.30 10.29 -15.06 -0.16 -6.45 16 23 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 24 C 0.01 0.26 5.43 -17.43 -0.09 0.17 16 25 N -0.90 -24.90 10.34 55.49 0.57 -24.33 16 26 Si 0.91 21.42 29.56 -169.99 -5.02 16.39 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 30 N -0.45 -5.33 9.51 -9.49 -0.09 -5.42 16 31 C 0.13 1.19 10.92 -17.15 -0.19 1.01 16 32 H 0.23 0.44 7.80 -54.09 -0.42 0.02 16 33 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.16 1.49 7.63 -52.49 -0.40 1.09 16 35 H 0.41 5.61 6.60 -40.82 -0.27 5.34 16 36 H 0.20 3.37 1.12 -165.89 -0.19 3.19 16 37 H 0.05 0.88 8.01 -51.93 -0.42 0.46 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.04 0.65 6.69 -51.93 -0.35 0.31 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.09 1.58 3.91 -51.93 -0.20 1.38 16 42 H 0.09 1.57 4.85 -51.93 -0.25 1.32 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.10 2.38 6.80 -51.93 -0.35 2.02 16 46 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 47 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 369.65 15.07 5.57 5.57 Total: -1.00 -30.36 369.65 -9.46 -39.82 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -6.17 Total: 10.43 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -3.72 Total: -8.13 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.20 Total: -54.79 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.36 -9.46 -39.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048582450.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.558 kcal (2) G-P(sol) polarization free energy of solvation -30.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds