Wall clock time and date at job start Tue Mar 31 2020 22:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39987 * 120.46132 * 321.01103 * 3 2 1 5 5 C 1.38218 * 118.36507 * 179.72573 * 4 3 2 6 6 C 1.39487 * 119.21117 * 0.49259 * 5 4 3 7 7 C 1.47988 * 119.57525 * 179.76994 * 6 5 4 8 8 O 1.21540 * 119.99587 * 359.72826 * 7 6 5 9 9 N 1.34774 * 120.00308 * 179.72770 * 7 6 5 10 10 C 1.46499 * 120.00027 * 179.72634 * 9 7 6 11 11 C 1.53002 * 109.47116 * 180.27041 * 10 9 7 12 12 H 1.08998 * 109.43474 * 299.70243 * 11 10 9 13 13 C 1.53151 * 109.43463 * 59.61516 * 11 10 9 14 14 C 1.53699 * 108.87741 * 66.16668 * 13 11 10 15 15 H 1.08993 * 112.10226 * 187.61860 * 14 13 11 16 16 C 1.54606 * 107.83550 * 312.23649 * 14 13 11 17 17 C 1.54310 * 104.75141 * 88.66892 * 16 14 13 18 18 C 1.54611 * 104.75509 * 359.97438 * 17 16 14 19 19 H 1.08992 * 112.19598 * 146.79792 * 18 17 16 20 20 C 1.53150 * 109.43511 * 179.83224 * 11 10 9 21 21 N 1.48300 * 104.25592 * 25.14303 * 18 17 16 22 22 C 1.36930 * 128.21175 * 138.37920 * 21 18 17 23 23 H 1.07998 * 120.00607 * 212.93906 * 22 21 18 24 24 C 1.38813 * 119.99886 * 32.93574 * 22 21 18 25 25 N 1.31622 * 119.99860 * 5.15432 * 24 22 21 26 26 Si 1.86798 * 120.00154 * 185.14490 * 24 22 21 27 27 H 1.48503 * 109.46894 * 60.00418 * 26 24 22 28 28 H 1.48506 * 109.47127 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47424 * 300.00494 * 26 24 22 30 30 N 1.32830 * 120.85824 * 359.49128 * 6 5 4 31 31 C 1.31293 * 121.78779 * 0.25877 * 30 6 5 32 32 H 4.52935 * 13.94770 * 359.97438 * 4 2 1 33 33 H 1.07995 * 120.81822 * 359.97438 * 4 3 2 34 34 H 1.08002 * 120.39679 * 180.26289 * 5 4 3 35 35 H 0.97002 * 119.99967 * 359.97438 * 9 7 6 36 36 H 1.08995 * 109.46897 * 300.27249 * 10 9 7 37 37 H 1.09002 * 109.47048 * 60.27062 * 10 9 7 38 38 H 1.08993 * 109.57176 * 185.99285 * 13 11 10 39 39 H 1.09004 * 109.56498 * 306.35418 * 13 11 10 40 40 H 1.08997 * 110.38344 * 207.47986 * 16 14 13 41 41 H 1.08994 * 110.38664 * 329.85003 * 16 14 13 42 42 H 1.08999 * 110.38484 * 241.17557 * 17 16 14 43 43 H 1.09006 * 110.38546 * 118.81311 * 17 16 14 44 44 H 1.08998 * 109.56847 * 53.64516 * 20 11 10 45 45 H 1.08997 * 109.56657 * 174.00823 * 20 11 10 46 46 H 0.96999 * 119.99646 * 179.97438 * 25 24 22 47 47 H 1.08002 * 119.65436 * 179.97438 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3161 -0.9369 0.7592 5 6 4.6973 -0.9007 0.7229 6 6 5.3327 0.0677 -0.0545 7 6 6.8112 0.1170 -0.0953 8 8 7.4638 -0.6798 0.5500 9 7 7.4340 1.0456 -0.8478 10 6 8.8976 1.0982 -0.8834 11 6 9.3448 2.2385 -1.8003 12 1 8.9670 2.0632 -2.8076 13 6 8.7906 3.5647 -1.2717 14 6 9.4485 3.8741 0.0825 15 1 8.9966 4.7378 0.5702 16 6 9.3757 2.5948 0.9476 17 6 10.6601 1.8128 0.6014 18 6 11.3880 2.6927 -0.4409 19 1 12.4722 2.6183 -0.3574 20 6 10.8749 2.2954 -1.8336 21 7 10.8977 4.0651 -0.1664 22 6 11.6136 5.2322 -0.1469 23 1 11.3362 6.0247 0.5324 24 6 12.6960 5.3969 -1.0002 25 7 12.9727 4.4747 -1.8977 26 14 13.7597 6.9273 -0.8752 27 1 14.3578 7.0049 0.4819 28 1 14.8415 6.8626 -1.8905 29 1 12.9251 8.1314 -1.1178 30 7 4.6279 0.9426 -0.7631 31 6 3.3150 0.9381 -0.7593 32 1 -1.0500 -0.0003 0.0009 33 1 2.7975 -1.6730 1.3554 34 1 5.2778 -1.6113 1.2925 35 1 6.9132 1.6813 -1.3631 36 1 9.2795 1.2701 0.1229 37 1 9.2861 0.1531 -1.2629 38 1 9.0172 4.3628 -1.9786 39 1 7.7112 3.4839 -1.1432 40 1 9.3623 2.8528 2.0065 41 1 8.4935 2.0101 0.6872 42 1 10.4099 0.8432 0.1707 43 1 11.2787 1.6861 1.4900 44 1 11.2709 1.3162 -2.1029 45 1 11.1968 3.0354 -2.5663 46 1 13.7288 4.5899 -2.4942 47 1 2.7765 1.6659 -1.3482 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048582450.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:21 Heat of formation + Delta-G solvation = 157.675477 kcal Electronic energy + Delta-G solvation = -29527.637362 eV Core-core repulsion = 25680.706912 eV Total energy + Delta-G solvation = -3846.930450 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.76966 -41.49216 -39.75146 -36.23475 -35.38412 -34.50247 -33.30372 -32.95308 -32.32467 -31.79330 -31.23983 -28.41188 -26.27108 -25.07867 -24.76677 -24.61492 -22.36177 -21.98323 -20.94839 -20.51044 -20.08484 -19.23626 -18.63106 -17.90295 -17.40860 -16.72787 -16.49105 -16.43228 -16.13844 -16.00642 -15.47245 -15.01507 -14.70300 -14.52324 -14.44958 -14.24150 -14.16786 -13.68715 -13.53260 -13.32203 -13.11791 -13.06666 -12.81126 -12.70009 -12.58098 -12.48654 -12.27241 -11.98660 -11.89493 -11.58563 -11.35150 -11.20378 -10.98222 -10.90462 -10.86980 -10.74024 -10.58883 -10.47151 -9.89429 -9.46512 -8.48474 -7.85542 -5.31017 -0.73774 0.14787 1.43401 1.47584 1.48662 1.54999 1.72050 2.12023 2.24090 2.50780 2.93372 3.02233 3.28934 3.31950 3.63081 3.73313 3.79459 3.96118 3.97246 3.97516 4.07129 4.17878 4.26097 4.30389 4.39969 4.58205 4.61891 4.67925 4.74557 4.75692 4.80301 4.92304 4.93323 5.01297 5.05120 5.11477 5.11804 5.20604 5.31528 5.41727 5.46447 5.50147 5.54914 5.57314 5.64378 5.75190 5.99309 6.36615 6.40082 6.53094 6.72927 7.12723 7.16071 7.74733 8.66687 9.25753 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025200 B = 0.002452 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.837963 B =11416.334629 C =11878.938524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.208 4.208 3 C -0.015 4.015 4 C -0.057 4.057 5 C -0.110 4.110 6 C 0.065 3.935 7 C 0.561 3.439 8 O -0.566 6.566 9 N -0.692 5.692 10 C 0.011 3.989 11 C -0.074 4.074 12 H 0.064 0.936 13 C -0.113 4.113 14 C 0.141 3.859 15 H 0.062 0.938 16 C -0.149 4.149 17 C -0.162 4.162 18 C 0.183 3.817 19 H 0.042 0.958 20 C -0.106 4.106 21 N -0.601 5.601 22 C -0.248 4.248 23 H 0.061 0.939 24 C -0.040 4.040 25 N -0.920 5.920 26 Si 0.967 3.033 27 H -0.281 1.281 28 H -0.294 1.294 29 H -0.278 1.278 30 N -0.467 5.467 31 C 0.116 3.884 32 H 0.263 0.737 33 H 0.173 0.827 34 H 0.158 0.842 35 H 0.411 0.589 36 H 0.188 0.812 37 H 0.052 0.948 38 H 0.037 0.963 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.055 0.945 44 H 0.047 0.953 45 H 0.058 0.942 46 H 0.248 0.752 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.609 -11.178 3.033 27.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.209 4.209 3 C -0.018 4.018 4 C -0.082 4.082 5 C -0.130 4.130 6 C -0.072 4.072 7 C 0.346 3.654 8 O -0.445 6.445 9 N -0.343 5.343 10 C -0.108 4.108 11 C -0.093 4.093 12 H 0.082 0.918 13 C -0.153 4.153 14 C 0.035 3.965 15 H 0.080 0.920 16 C -0.187 4.187 17 C -0.200 4.200 18 C 0.076 3.924 19 H 0.061 0.939 20 C -0.146 4.146 21 N -0.323 5.323 22 C -0.378 4.378 23 H 0.078 0.922 24 C -0.237 4.237 25 N -0.564 5.564 26 Si 0.795 3.205 27 H -0.207 1.207 28 H -0.220 1.220 29 H -0.204 1.204 30 N -0.177 5.177 31 C -0.044 4.044 32 H 0.279 0.721 33 H 0.190 0.810 34 H 0.176 0.824 35 H 0.249 0.751 36 H 0.203 0.797 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.057 0.943 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -23.376 -10.980 2.850 25.983 hybrid contribution 0.407 0.676 -0.283 0.839 sum -22.968 -10.304 2.567 25.304 Atomic orbital electron populations 1.25886 0.96450 0.95478 0.95297 1.19819 0.91851 1.04604 1.04601 1.17324 0.88986 0.97142 0.98323 1.21962 0.92735 0.97272 0.96227 1.22172 0.95311 0.97995 0.97562 1.21179 0.93563 0.95056 0.97415 1.18111 0.86554 0.80986 0.79734 1.90765 1.66727 1.41670 1.45348 1.46124 1.08220 1.33377 1.46557 1.25000 0.78770 0.97649 1.09357 1.21109 0.96148 0.94069 0.97947 0.91769 1.22032 0.98716 0.96295 0.98209 1.21745 0.85839 0.95244 0.93686 0.91992 1.23309 0.98331 0.97494 0.99584 1.23445 0.96888 0.99741 0.99976 1.21132 0.95489 0.84063 0.91713 0.93948 1.21908 0.93422 0.99499 0.99757 1.45163 1.02614 1.02111 1.82432 1.19028 1.10520 0.93669 1.14572 0.92154 1.25908 1.01968 1.00194 0.95625 1.70047 1.29385 1.35365 1.21609 0.85369 0.78158 0.80057 0.76885 1.20732 1.22025 1.20404 1.67531 1.09274 1.22433 1.18504 1.23340 0.88453 0.96750 0.95906 0.72059 0.80989 0.82391 0.75134 0.79663 0.92991 0.94408 0.90953 0.92548 0.87245 0.87504 0.92638 0.93425 0.92366 0.94291 0.79553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 19.25 74.32 1.43 0.57 16 2 C -0.21 -2.70 13.28 30.01 0.40 -2.30 16 3 C -0.02 -0.24 5.75 -21.20 -0.12 -0.36 16 4 C -0.06 -0.83 9.89 22.69 0.22 -0.61 16 5 C -0.11 -2.11 9.61 22.57 0.22 -1.90 16 6 C 0.06 1.55 6.75 41.88 0.28 1.83 16 7 C 0.56 16.27 7.54 86.83 0.65 16.93 16 8 O -0.57 -19.24 16.31 -3.84 -0.06 -19.31 16 9 N -0.69 -19.45 4.35 -465.83 -2.03 -21.48 16 10 C 0.01 0.36 2.70 86.38 0.23 0.60 16 11 C -0.07 -2.60 2.77 -10.69 -0.03 -2.63 16 12 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 13 C -0.11 -4.14 5.27 30.88 0.16 -3.98 16 14 C 0.14 5.78 4.32 45.43 0.20 5.97 16 15 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 16 C -0.15 -5.31 5.72 31.59 0.18 -5.13 16 17 C -0.16 -6.14 5.72 31.59 0.18 -5.95 16 18 C 0.18 8.46 3.10 45.41 0.14 8.60 16 19 H 0.04 2.27 7.52 -2.39 -0.02 2.25 16 20 C -0.11 -4.55 5.17 30.86 0.16 -4.39 16 21 N -0.60 -29.95 2.73 -637.35 -1.74 -31.70 16 22 C -0.25 -13.76 10.29 84.03 0.87 -12.90 16 23 H 0.06 3.31 7.83 -2.91 -0.02 3.28 16 24 C -0.04 -2.23 5.43 84.86 0.46 -1.77 16 25 N -0.92 -53.04 10.34 21.65 0.22 -52.81 16 26 Si 0.97 45.18 29.56 68.60 2.03 47.21 16 27 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 28 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 29 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 30 N -0.47 -10.28 9.51 -183.93 -1.75 -12.03 16 31 C 0.12 2.00 10.92 85.18 0.93 2.93 16 32 H 0.26 -0.38 7.80 -4.42 -0.03 -0.42 16 33 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 34 H 0.16 2.86 7.63 -2.91 -0.02 2.84 16 35 H 0.41 10.63 6.60 -92.71 -0.61 10.02 16 36 H 0.19 6.21 1.12 -109.44 -0.12 6.09 16 37 H 0.05 1.68 8.01 -2.39 -0.02 1.66 16 38 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.07 2.19 6.69 -2.39 -0.02 2.18 16 40 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.11 3.56 3.91 -2.39 -0.01 3.55 16 42 H 0.11 3.68 4.85 -2.39 -0.01 3.67 16 43 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 44 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.06 2.97 6.80 -2.39 -0.02 2.95 16 46 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 47 H 0.19 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -68.30 369.65 3.52 -64.79 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: 0.28 Total: 29.82 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: 6.57 Total: -4.49 kcal Atomic # 7 Polarization: -112.73 SS G_CDS: -5.30 Total: -118.02 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.06 Total: -19.31 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -68.30 3.52 -64.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048582450.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.461 kcal (2) G-P(sol) polarization free energy of solvation -68.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds